File: colSums2-xgCMatrix-method.Rd

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r-bioc-sparsematrixstats 1.10.0%2Bdfsg-1
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/methods.R, R/methods_row.R
\name{colSums2,xgCMatrix-method}
\alias{colSums2,xgCMatrix-method}
\alias{rowSums2,xgCMatrix-method}
\title{Calculates the sum for each row (column) of a matrix-like object}
\usage{
\S4method{colSums2}{xgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, useNames = NA)

\S4method{rowSums2}{xgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, useNames = NA)
}
\arguments{
\item{x}{An NxK matrix-like object.}

\item{rows}{A \code{\link{vector}} indicating the subset of rows
(and/or columns) to operate over. If \code{\link{NULL}}, no subsetting is
done.}

\item{cols}{A \code{\link{vector}} indicating the subset of rows
(and/or columns) to operate over. If \code{\link{NULL}}, no subsetting is
done.}

\item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link{NA}}s
are excluded first, otherwise not.}

\item{useNames}{If \code{\link{NA}}, the default behavior of the function about naming support is remained. If \code{\link{FALSE}}, no naming support is done. Else if \code{\link{TRUE}}, names attributes of result are set.}
}
\value{
Returns a \code{\link{numeric}} \code{\link{vector}} of length N (K).
}
\description{
Calculates the sum for each row (column) of a matrix-like object.
}
\details{
The S4 methods for \code{x} of type \code{\link{matrix}},
\code{\link{array}}, or \code{\link{numeric}} call
\code{matrixStats::rowSums2}
/ \code{matrixStats::colSums2}.
}
\examples{
mat <- matrix(rnorm(15), nrow = 5, ncol = 3)
  mat[2, 1] <- NA
  mat[3, 3] <- Inf
  mat[4, 1] <- 0
  
  print(mat)
  
  rowSums2(mat)
  colSums2(mat)
}
\seealso{
\itemize{
\item \code{matrixStats::\link[matrixStats]{rowSums2}()} and
\code{matrixStats::\link[matrixStats:rowSums2]{colSums2}()} which are used
when the input is a \code{matrix} or \code{numeric} vector.
\item For mean estimates, see \code{\link[MatrixGenerics]{rowMeans2}()} and
\code{\link[base:colSums]{rowMeans}()}.
\item \code{base::\link{sum}()}.
}
}