File: colMeans2-xgCMatrix-method.Rd

package info (click to toggle)
r-bioc-sparsematrixstats 1.18.0%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 1,048 kB
  • sloc: cpp: 1,749; makefile: 2
file content (58 lines) | stat: -rw-r--r-- 2,006 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/methods.R, R/methods_row.R
\name{colMeans2,xgCMatrix-method}
\alias{colMeans2,xgCMatrix-method}
\alias{rowMeans2,xgCMatrix-method}
\title{Calculates the mean for each row (column) of a matrix-like object}
\usage{
\S4method{colMeans2}{xgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, useNames = TRUE)

\S4method{rowMeans2}{xgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, useNames = TRUE)
}
\arguments{
\item{x}{An NxK matrix-like object.}

\item{rows, cols}{A \code{\link{vector}} indicating the subset of rows
(and/or columns) to operate over. If \code{\link{NULL}}, no subsetting is
done.}

\item{na.rm}{If \code{\link[base]{TRUE}}, missing values
(\code{\link[base]{NA}} or \code{\link[base]{NaN}}) are
omitted from the calculations.}

\item{useNames}{If \code{\link{TRUE}} (default), names attributes of result are set. Else if \code{\link{FALSE}}, no naming support is done.}
}
\value{
Returns a \code{\link{numeric}} \code{\link{vector}} of length N (K).
}
\description{
Calculates the mean for each row (column) of a matrix-like object.
}
\details{
The S4 methods for \code{x} of type \code{\link{matrix}},
\code{\link{array}}, \code{\link{table}}, or \code{\link{numeric}} call
\code{matrixStats::\link[matrixStats]{rowMeans2}} /
\code{matrixStats::\link[matrixStats]{colMeans2}}.
}
\examples{
mat <- matrix(rnorm(15), nrow = 5, ncol = 3)
mat[2, 1] <- NA
mat[3, 3] <- Inf
mat[4, 1] <- 0

print(mat)

rowMeans2(mat)
colMeans2(mat)
}
\seealso{
\itemize{
\item \code{matrixStats::\link[matrixStats]{rowMeans2}()} and
\code{matrixStats::\link[matrixStats:rowMeans2]{colMeans2}()} which are
used when the input is a \code{matrix} or \code{numeric} vector.
\item See also \code{\link[base:colSums]{rowMeans}()} for the
corresponding function in base R.
\item For variance estimates, see \code{\link[MatrixGenerics]{rowVars}()}.
\item See also the base R version \code{base::\link[MatrixGenerics]{rowMeans}()}.
}
}