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Package: StructuralVariantAnnotation
Type: Package
Title: Variant annotations for structural variants
Version: 1.13.0
Date: 2021-08-04
Authors@R: c(
person("Daniel", "Cameron", email="daniel.l.cameron@gmail.com", role=c("aut", "cre"), comment=c(ORCID = "0000-0002-0951-7116")),
person("Ruining", "Dong", role=c("aut"), comment=c(ORCID = "0000-0003-1433-0484")))
Description: StructuralVariantAnnotation provides a framework for
analysis of structural variants within the Bioconductor ecosystem.
This package contains
contains useful helper
functions for dealing with structural variants in VCF format.
The packages contains functions for parsing VCFs from a number
of popular callers as well as functions for dealing with
breakpoints involving two separate genomic loci encoded as
GRanges objects.
License: GPL-3 + file LICENSE
Depends: GenomicRanges, rtracklayer, VariantAnnotation, BiocGenerics, R
(>= 4.1.0)
Imports: assertthat, Biostrings, stringr, dplyr, methods, rlang,
GenomicFeatures, IRanges, S4Vectors, SummarizedExperiment,
GenomeInfoDb,
Suggests: ggplot2, devtools, testthat (>= 2.1.0), roxygen2, rmarkdown,
tidyverse, knitr, ggbio, biovizBase,
TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
RoxygenNote: 7.1.1
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: DataImport, Sequencing, Annotation, Genetics,
VariantAnnotation
git_url:
https://git.bioconductor.org/packages/StructuralVariantAnnotation
git_branch: master
git_last_commit: adde13e
git_last_commit_date: 2022-04-26
Date/Publication: 2022-05-01
NeedsCompilation: no
Packaged: 2022-05-01 22:03:04 UTC; biocbuild
Author: Daniel Cameron [aut, cre] (<https://orcid.org/0000-0002-0951-7116>),
Ruining Dong [aut] (<https://orcid.org/0000-0003-1433-0484>)
Maintainer: Daniel Cameron <daniel.l.cameron@gmail.com>
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