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Source: r-bioc-structuralvariantannotation
Section: gnu-r
Priority: optional
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-structuralvariantannotation
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-structuralvariantannotation.git
Homepage: https://bioconductor.org/packages/StructuralVariantAnnotation/
Standards-Version: 4.6.1
Rules-Requires-Root: no
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-bioc-genomicranges,
r-bioc-rtracklayer,
r-bioc-variantannotation,
r-bioc-biocgenerics,
r-cran-assertthat,
r-bioc-biostrings,
r-cran-stringr,
r-cran-dplyr,
r-cran-rlang,
r-bioc-genomicfeatures,
r-bioc-iranges,
r-bioc-s4vectors,
r-bioc-summarizedexperiment,
r-bioc-genomeinfodb
Testsuite: autopkgtest-pkg-r
Package: r-bioc-structuralvariantannotation
Architecture: all
Depends: ${R:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: Variant annotations for structural variants
StructuralVariantAnnotation contains useful helper
functions for dealing with structural variants in VCF format.
The packages contains functions for parsing VCFs from a number
of popular callers as well as functions for dealing with
breakpoints involving two separate genomic loci encoded as
GRanges objects.
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