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|
##fileformat=VCFv4.1
##phasing=none
##INDIVIDUAL=TRUTH
##SAMPLE=<ID=TRUTH,Individual="TRUTH",Description="bamsurgeon spike-in">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
##INFO=<ID=CT,Number=1,Type=String,Description="Paired-end signature induced connection type">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic mutation in primary">
##INFO=<ID=GERMLINE,Number=0,Type=Flag,Description="Germline structural variant">
##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for END coordinate in case of a translocation">
##INFO=<ID=UNKNOWN_LEN,Number=0,Type=Flag,Description="Unknown the length of SV">
##INFO=<ID=CONSENSUS,Number=1,Type=String,Description="Breakpoint consensus sequence">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INS,Description="Insertion">
##ALT=<ID=TRA,Description="Translocation">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SPIKEIN
1 713519 N . <TRA> 5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGAGCCCAAGCCATCCATCCTCCCGCCTCGGCGGCGCCAGACATAGTTTTCTATTTTTGACCAACATAAACACTGTGCTGGGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTGTTCTGCTTGAAA;SVTYPE=TRA;CHR2=4;END=120375574;SVLEN=0 GT ./. E4394080 contig1 size218 2 cov1.39 100 1 40 1 40 59 0 0 0 0 107 3 17.6666666666667 1 43 33 3 47 2 57 3 0 4 0
1 2585990 N . <DUP> 31.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGCCCGGACCCGCCCGCACACTCCCAGGCGAGCAGCTGACAGCCTGGAACAGCACCCATACGCCCAGATGAGAATCTGACGGCCTGGAAAAGCACCCTGCACCCCCAGGTGCGCACCTGACAGCCTGGAACAGCACCCACACCCCCAGGCGAGCATCTGACCGGACGGAGCAGCACCCACAACCCCAGGCGGGCGTCTAACAGCCTGTATCAGCACCCACACCCCCAGAGGAGAGGCGGCCAGCCGGGAACCGAACCCAAAAAACCAGGGGAAAGACCAGA;SVTYPE=DUP;CHR2=1;END=2632394;SVLEN=46404 GT ./. E2809384 contig1 size282 2 cov1.07 1184 10 21.2 4 46.25 452 2 12 0 0 77 6 7.83333333333333 0 0 42 4 17.25 2 34.5 7 0 7 0
1 2591164 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGCAGGGCCCCCACCCCCACGGGAGCCTCCGCCCGTCCCGAGCAGGACCCACACCCCCAGGGGAGCATCCGAACGCCCGGAGCAGGCCCCACCACCCCAGGTGAGCATCCGACAGCCTGGAACAGCACGCTGCCCCCCCAGGTGAGCATCTGACAGCCCGCAGCATCACCCACATGCACAGGTGAGAATCTGACAGCCCGGAGCAGCACCCACACCCCCAGGGGAGCATCTGATGGTTTAGAGCAGTACCCACACCCACAGGTGAGCATCTGACAGCCTGGAACA;SVTYPE=DEL;CHR2=1;END=2612744;SVLEN=-21580 GT ./. E3058066 contig1 size286 2 cov1.06 1103 27 1.77777777777778 0 0 491 9 0 0 0 676 6 0 0 0 290 1 0 0 0 8 0 4 0
1 2776029 N . <INV> 7 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGTAGGGGGAGGGAGGGGGGGGAAGGGGGAGGTAGGGAGGAGGGGTGTGGGAAGGAGAGGGGGACCGGGGAGGTGTACACGCGGAGGGAGGACGGGGGGGGGAGGGGGGGGGAAGGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGAGGGGGGGAGGGGGGGGGAAGGAGGGAGGAAGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAGGGAGGGGGGAAGGGGGGAGGAGGGG;SVTYPE=INV;CHR2=1;END=241838526;SVLEN=239062498 GT ./. E1239950 contig1 size275 2 cov1.10 67 5 12.8 1 59 37 5 7.8 0 0 116 8 17.375 2 60 32 2 0 0 0 3 0 9 0
1 2776125 N . <INV> 7 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGTAGGGGGAGGGAGGGGGGGGAAGGGGGAGGTAGGGAGGAGGGGTGTGGGAAGGAGAGGGGGACCGGGGAGGTGTACACGCGGAGGGAGGACGGGGGGGGGAGGGGGGGGGAAGGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGAGGGGGGGAGGGGGGGGGAAGGAGGGAGGAAGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAGGGAGGGGGGAAGGGGGGAGGAGGGG;SVTYPE=INV;CHR2=1;END=241838526;SVLEN=239062402 GT ./. E1239950 contig1 size275 2 cov1.10 290 8 6.75 0 0 137 4 11.25 1 30 116 8 17.375 2 60 32 2 0 0 0 3 0 9 0
1 5220377 N . <TRA> 9 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACATACACATACTAACACATGCACACACTAACACATACACATACACACATACTAACACATACACACACACTAACACATACACATACATATATACTAACATACACATACACACATACTAACACATACACACACACATACACATACACATACAGATATACTAACACATACACATACACACACTCACACACACACCCACACCCACACACA;SVTYPE=TRA;CHR2=6;END=96918772;SVLEN=0 GT ./. E3525624 contig1 size209 2 cov1.44 641 0 0 0 0 199 0 0 0 0 106 5 2.2 0 0 39 0 0 0 0 22 2 21 2
1 5220391 N . <TRA> 4.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAACACATACACATACACACATACTAACACATACACACACACTAACACATACACATACATATATACAAACATACACATACACACATACAAACACATACACACACACATACACATACACATACAGATATACTAACACATACACACACACACATACTAACACATACACATACACACATACTAACACATACACATACATATATACTAACACACACTAACACATACACACATACTAACACACACACACACTAACACACACACACACTAACACATACACATACACACAA;SVTYPE=TRA;CHR2=6;END=96918772;SVLEN=0 GT ./. E216809 contig14 size285 2 cov1.06 533 2 0 0 0 154 0 0 0 0 106 5 2.2 0 0 39 0 0 0 0 22 2 21 2
1 12431934 N . <TRA> 4 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCATTTATCAGTACATTTTTCCTTTTCGTGGCGAAATAATATTCCATTGTATGTCTATACCACCCTTTGCATATACGTTCATCCACTGATGGACATTTGGGCTGCTTCCACCATTTGGCTGTTGTAAACAGTGTTGCTATGAACATGCATGTACAAGTATTTGTTCGAGTCCTTGTTTGCACTTCTTTTGGGTGTATACCTAGGAATGGAATTGCAGCAATCATATGGCAATTCTATGCTTACGTT;SVTYPE=TRA;CHR2=X;END=114672165;SVLEN=0 GT ./. E223170 contig1 size247 2 cov1.22 347 24 5.79166666666667 0 0 106 4 0 0 0 204 0 0 0 0 54 1 0 0 0 8 0 3 0
1 23389704 N . <TRA> 8 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACACACACGCAACCACAACACCTGCACACACCCACTCACACACAGACACACACACACCCCGCACACACACACACACACACACACACACATACACACACACCCACCCCACACACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACACACACACACACACACACACACACACACCCACCCCACACAAACACACCGAGACCGGCAAAAGTGCAGAGCTC;SVTYPE=TRA;CHR2=6;END=44149853;SVLEN=0 GT ./. E413660 contig5 size283 2 cov1.07 86 0 0 0 0 34 0 0 0 0 217 3 5.33333333333333 0 0 87 1 3 0 0 10 0 11 1
1 23389748 N . <TRA> 8 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACACACACGCAACCACAACACCTGCACACACCCACTCACACACAGACACACACACACCCCGCACACACACACACACACACACACACACATACACACACACCCACCCCACACACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACACACACACACACACACACACACACACACCCACCCCACACAAACACACCGAGACCGGCAAAAGTGCAGAGCTC;SVTYPE=TRA;CHR2=6;END=44149853;SVLEN=0 GT ./. E413660 contig5 size283 2 cov1.07 124 1 0 0 0 48 0 0 0 0 217 3 5.33333333333333 0 0 87 1 3 0 0 10 0 11 1
1 25075555 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGTCACCCGCCAACACATCCTACTAATTTTTTGTGTTTTTAGTAGAAATGCGGTGTCGCCATGCGGCCCAGGCTGGTCTTGAACACCTGACCTCATGATCCACCTGCCTCCACGGCTGAAAGTGCTGGGATTACAGACTTGATCAACCGCGCCCAGCCAAATATCTTCTTTTGAAAAGAGTCTGTTTATATTCTGTGCCCACTTTTTGATGGTTTTTTTTTGTGTGTGTGTGAATTTGTTTAAGTTCTTTGTAGATTCTGGATATTAGACCTCTGACACATGGATAGAGTGCAAAAATTTTCTTTCACTCTGTAGGTTGCCTGGTCACTCTGGTGATAGCTTCTTTTGCTGTGCAGAAGCTCGTTAGTTTAGTTAGATCTCATTTGTCAATTTTAGCTTTTGTTGTGAT;SVTYPE=TRA;CHR2=X;END=141107396;SVLEN=0 GT ./. E2356643 contig1 size410 7 cov2.58 186 12 0 0 0 55 3 0 0 0 53 151 0 0 0 18 37 0 0 0 19 1 20 1
1 28193228 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTGGTACTGTATTAGGGAAGTCATAGCAAAGCGTTACAGCCTATTAGGACACAGATAAGATGTTCCCTGTAGCGGCTGGGCGCGGTGGCTTACACCTGTAATCCTAGCACTTTCGGAGGCCGAGGCGAGTGGATCACGAGGTCAGGAGATCGAGACCATCCTAGCTAACACGGTGAAACTCTGTCTCTACTAAAAAAAAAAACCACACACACACAGAGAAAAAAAATTAGCCGGGCGTGGTGACAGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAAGATGGCGTGAACCCAGGAGGCAGAGTGCAGTGAGCCGAGACTGCACCACTGCACTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAA;SVTYPE=TRA;CHR2=4;END=74055839;SVLEN=0 GT ./. E701572 contig1 size377 3 cov1.20 77 0 0 0 0 32 0 0 0 0 150 0 0 0 0 41 0 0 0 0 5 0 5 0
1 28884596 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCGCCCAGGCTGGAGTGCAGTGGAATGATCTCGGCTCACTGCAACCTCCACCTCCCAAATTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGTCATGTGCCACCATGCCTGGCTAATTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCTCGCTCTGTCACCCAGGCTTGGGTGCAGTGGCACCATCTTGGCTAACTGCAACCTCCGCCTCCCGGGGTCAAGCGACTCTCCTGCCTCACCTTCCCAAGTTGCTGGGACCACAGACCCC;SVTYPE=TRA;CHR2=14;END=21805912;SVLEN=0 GT ./. E3227222 contig1 size280 2 cov1.08 97 13 51.9230769230769 12 54.75 41 0 0 0 0 114 2 60 2 60 28 0 0 0 0 0 0 0 0
1 33154837 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGAGCCGTTGTCCTTGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTGAGTCACTGTCACCCAGGCTGGATTGCAGTGGCACAATCTCAGCTCACTGCAACCTCTGCTGCCCAGGTTCAAGCTATTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTACCACCATGCCTGGCTAATTTTTTTGTAGTTCTAGCAGAG;SVTYPE=TRA;CHR2=16;END=27988881;SVLEN=0 GT ./. E590726 contig2 size221 2 cov1.37 98 22 48.9090909090909 19 53.2631578947368 30 6 58.1666666666667 6 58.1666666666667 73 46 55.7173913043478 46 55.7173913043478 23 8 52 7 57.1428571428571 4 0 3 0
1 37259413 N . <TRA> 9 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGTGGATGGTTGGGTGGATGGTGGGGTGGGGGGGGGGATGGATGGGTGGATGGATACATGGATGCGTGGGTGGGTGAAATGATGAATGGGTGGGTGGATGGATGGATGGGTGGATGGATGGGTGAATGGATGGATGGAGGATGAGTGGGTGGAGAGGTGGATGGATGGATGAATTGGTGGGTAAGTGGGTGGATGCTAGAAGGATATATGGATGATGAATGGATGAATGGATGCCTGAATGA;SVTYPE=TRA;CHR2=17;END=80105511;SVLEN=0 GT ./. E1609925 contig1 size286 2 cov1.06 151 8 35.25 5 42.8 73 1 60 1 60 94 5 33.6 2 59.5 29 0 0 0 0 4 0 4 0
1 42010331 N . <TRA> 36.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCTGGCTCTCATGGTTGAAGATGTTGCTAGTGAGAGAACTATTCTCTAGGGCATGGAATAACTGGACAGGGAGGGGGATGTCTCTCCACAGCAAACCCTCACCATAGGCCCCAGTGAAGCACCACGACCACCTCTACCACCATCACTACCATCACCACCACCATCACCACCACCACCATCAGCACCACGACCAGCACCACCACCACGACCACCACGGCGGCCGCCGCCACCACCACAACCACTACCACCACCACCACCAC;SVTYPE=TRA;CHR2=13;END=22299997;SVLEN=0 GT ./. E4445911 contig2 size261 2 cov1.16 95 1 37 1 37 44 0 0 0 0 133 2 12.5 0 0 57 1 0 0 0 4 0 11 1
1 42010492 N . <TRA> 30 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACCACCACCACCACTATAACCACCATCATCATCACCACCACTACCACTACTATAACCATCACCACCATCACTGCTATAACCACCACCACCACCACTATAACCATCACCACCATCACCACTATAACCACCACTACCACCACCACCACTATAACCACCACCACCACCACTATAACCACCATCATCACCACCACCACTACCACCACCCCCACCAACACCACCACCACTGCTATCACCACCACCACCACCACCACCACCACCACCACCACCACC;SVTYPE=TRA;CHR2=13;END=36532269;SVLEN=0 GT ./. E2938658 contig1 size272 2 cov1.11 189 5 29.6 3 37 77 6 7.16666666666667 1 40 300 86 46.7674418604651 68 56.1470588235294 114 41 49.7560975609756 34 56.7352941176471 4 0 3 0
1 49056788 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGGGGGAGTGTGTGTGTGTGGGTGTGTGTGGGTGCGGGAGCGTGTGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGGGGGGTGGGTGTGGGTGGGTGTGG;SVTYPE=TRA;CHR2=19;END=47333454;SVLEN=0 GT ./. E1194639 contig2 size286 2 cov1.06 124 0 0 0 0 36 0 0 0 0 104 0 0 0 0 41 0 0 0 0 4 0 3 0
1 50536138 N . <TRA> 3 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGAGAGGAGATTGTGCCACGGCACCCCAGACAGAGAAAAAAAAGGAAAACCCCGTCAAAAAAAAAAAAAAAAAAAAAAAAAGCTAAAGCCAGGCGCAGTGGCTAAAGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGTTCGAGACCAGGCTGACCAAAATGGTGAAACCCCGTCTCTGCTAAA;SVTYPE=TRA;CHR2=3;END=185078599;SVLEN=0 GT ./. E1086271 contig1 size209 2 cov1.44 79 35 1.8 0 0 40 5 0.4 0 0 159 0 0 0 0 52 0 0 0 0 4 0 7 0
1 72034546 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGGAGGATTGCTTGAGCCCAGTAGGAGAGAGAGGTTTCAGTTAGCCGAGATTGTGCTACTAGCCTGGGGGACAGAGTGAGATCCTGTCTCAAGAAAAAAAAAAATAGATATACGTAAACACACACACACACACACACACACACACACACATATGTATACATATATACACATACACACATACATATAAAACATAATTCTTATAATTTTATTTTATATGTGCATAAACACATATATACTCACATATATATAATTTACACATA;SVTYPE=TRA;CHR2=12;END=77123609;SVLEN=0 GT ./. E2856884 contig1 size261 2 cov1.16 114 0 0 0 0 47 0 0 0 0 136 11 60 11 60 54 0 0 0 0 0 0 0 0
1 87337011 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACTTTGTAAAATATTTAAAGAGATTTATTCTGAGCTAAATGTAAGGACCATGATCTGTGACACAACCTCAAGAGGTCCTGAGAACATGTGCCCAAGGTGGTTGGGTGACAGCCTGGTTTTATATGTTTTAGGGAGACATAAGATATCAATCAGTACATGTGAGGTACATATTGGTTTGGTCTGGAAAGGCAAGACAATGTGGAGCTGTGGGGGAGGTGGTGAGGAAAAGGGCTTCCAGGTCATAGGTAGATTTAAAGATTTTCTGATTAGCAATTGGTTTAAAGAGTTAAGTTATTATCTAAAGACTGGGAATCAATAGAAAAGAGTGTCTGGGTTAAGATAACGGGCTGTAGAAACCAAGGTTTTTATTATGTAGATGAAGTCTCGTAGGTTGCAGCCCTTAGATACAATAGATGGCAAATGCTTGCTATTCAGATCTTTAAAAGGGGGAGAATATAATGAGCCATGTCCAACAGCCCCCACTTCCGATCATGGTCTAAATTAGTTTTTCAGGTTTCTTTGGAATCATTTTTGCCAAAAGGGAGATCCATTTGGTTGGTTGGGGGGCTTAGAATTTTTTTGGTTTACATTCTTATATGTTTTAAAGGTTTTTTTCATCTTCTCTCTCATCTGGAGACCCCAGGGCTCCTCTCCAGGGTTCTTCCTCTGCATGGCCTTCTAGATCTCCTTGCTCTGAACTTAGAGTACTTATTGTCAATTGTTAAATTAACGACATTGTTTTTATTATCACCTTATCTTTTTATTTGTTGCAGATCTGTTTAAGCAGACTGTAGATGTATTGACATTAAAGAACTCAGTTTCCTCATATTCTCATGTAGCTTATCGAATGCCATGTGTATATAATGAGTACTCAAATATTTGTTAAAAGATTTATTTACTGCCTGTAAA;SVTYPE=TRA;CHR2=10;END=36119127;SVLEN=0 GT ./. E1557344 contig1 size911 43 cov7.13 108 29 58.5172413793103 29 58.5172413793103 54 1 60 1 60 93 9 58.4444444444444 9 58.4444444444444 36 0 0 0 0 51 0 16 0
1 88473124 N . <TRA> 12.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAATAAAACAATCTTTTTTATTTTTATTTTTTAGTGACAGGGTCTCACTCCGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTTACGGTAGCCTTGAACTCCTGGGCTCCAGTGATCCTCCCACCTCAGTCTCCTGAGTGGCTAAAACTACAGGTGC;SVTYPE=TRA;CHR2=4;END=6257278;SVLEN=0 GT ./. E897774 contig2 size164 2 cov1.84 81 12 0 0 0 41 1 0 0 0 75 15 13.7333333333333 0 0 50 6 16.1666666666667 0 0 4 0 6 0
1 88473177 N . <TRA> 12.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAATAAAACAATCTTTTTTATTTTTATTTTTTAGTGACAGGGTCTCACTCCGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTTACGGTAGCCTTGAACTCCTGGGCTCCAGTGATCCTCCCACCTCAGTCTCCTGAGTGGCTAAAACTACAGGTGC;SVTYPE=TRA;CHR2=4;END=6257278;SVLEN=0 GT ./. E897774 contig2 size164 2 cov1.84 126 4 1 0 0 68 3 3.33333333333333 0 0 75 15 13.7333333333333 0 0 50 6 16.1666666666667 0 0 4 0 6 0
1 97692910 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCCCAGCTCTACTCGGGAGGCTGAGGCAGGAAAATGGCTTGAATCTGGGAGGTGGAGATTGCAGTGAGCCGAGATCGTGCCACGGCCACTGCGCTCCAGCCTGGCAACAGAGTGAGACTCTTATCTCAAAAAAAAAAAAAAAAAAAAAATCGGGACCAGGTTAATTTTGAAAACAGGAGACTTTGAGTAAAGCAGATGACCTTCCATAATGTGGGTGGGCCCCATCCCGGCAGTTGAAGGCCTTAATAGAAAAAAAGACCGACCTCCCTGGAGGG;SVTYPE=TRA;CHR2=14;END=90182747;SVLEN=0 GT ./. E1692865 contig2 size277 2 cov1.09 87 0 0 0 0 46 0 0 0 0 84 34 55.5294117647059 34 55.5294117647059 17 0 0 0 0 0 0 1 0
1 109764613 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTCTGTCACCTAGCCTGGAGTGCAGTGGAATGATCTTGGCTCACTGCAGTCTCTGCCTCCCAAGTAGCTGGGAGTACAGGCACACACCACCATGCTCAGCTAATTTTTTTTTTTGTGTGCATATATATATATATATATATGTTTTTTTTTGAGACAGGGTCTCACTGTATCACCCAGGAGGAGTGCAGTGGCTCCATGTCAGCTCACTACAACTCTCCACCCTCACCCCCTAGGCTCAAGCTTCCCACCCCAGCCTCCCCAGTAGCTGG;SVTYPE=TRA;CHR2=16;END=9452713;SVLEN=0 GT ./. E4049754 contig1 size270 2 cov1.12 78 9 51.1111111111111 8 57.5 31 1 60 1 60 113 4 53.5 4 53.5 28 0 0 0 0 0 1 0 0
1 119964075 N . <TRA> 37 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATGTGTATATATATGTATATATATATATGTATATATATGTATATATATATATGTATATATATATATTTACACACACACACACACACAGAGGTCATAATTGGATTCCATATAATAATGATATCAATATGTCTATCAGTATTGGAGTTGGATTCTGGTACTTTCTCATGTGGGG;SVTYPE=TRA;CHR2=11;END=59973949;SVLEN=0 GT ./. E82149 contig1 size176 2 cov1.72 69 10 14.1 0 0 16 0 0 0 0 56 2 20 1 40 18 0 0 0 0 22 2 14 0
1 121351907 N . <DEL> 16 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCGTTCTTTTTCTCCACTTGCAGATCCTCCGGAACGAGTGTTTCTCCCTGAACTCACCAGTGAAGTTTCAACTCTGGGAGTTGAATGCCAACGTCACGAAGAAGTTTCTGAGAATGCTTCTGTTTAGTTATGTGAGGTTTATCCCGTTTCCAAGGAAATCCTCAGAGAAGGCCAAACACCCAATGGCAAATTCTACAAAAAGTGTGTTTCGAAACTGCTCCATCCAAAACAACGTTCAGCTCTATTGGTTGAACTCAATCGTCACAAAGTTGTTCCTGAGAATG;SVTYPE=DEL;CHR2=1;END=121474653;SVLEN=-122746 GT ./. E1441251 contig2 size285 2 cov1.06 4487 20 24.35 7 43.8571428571429 1754 13 20.5384615384615 3 43.6666666666667 108 2 0 0 0 46 0 0 0 0 6 0 6 0
1 121356053 N . <DEL> 1.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTGAAAGGAATCATCAAAATGTAGTTTCGGAGAATGCTTTCATCTAGATTTTTGAGTAGATAGTTGATTTTCCACCACAGGCCTCGAAACCCTCCAAATGTCCACTTGCAGACTCTAGAAAGAGAGGGTTTCAAAGCTGCTCTATCAAAAGGAAAGTACAACTCTGGGAGTTGAATGCAAGCCTCACAAAGAAGTTTCTGAGAAGGCTTCTGTTTAGTTTTTATGTGAAGATAATCCCGTTTGCATAGAAATCTTCACAGAGTTTCCCCTATCCCCGGGTAGG;SVTYPE=DEL;CHR2=1;END=121475386;SVLEN=-119333 GT ./. E1521782 contig8 size284 2 cov1.06 1080 40 16.375 14 39.3571428571429 442 25 12.16 6 38.8333333333333 136 1 0 0 0 62 0 0 0 0 11 0 11 0
1 121356189 N . <DEL> 1.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTGAAAGGAATCATCAAAATGTAGTTTCGGAGAATGCTTTCATCTAGATTTTTGAGTAGATAGTTGATTTTCCACCACAGGCCTCGAAACCCTCCAAATGTCCACTTGCAGACTCTAGAAAGAGAGGGTTTCAAAGCTGCTCTATCAAAAGGAAAGTACAACTCTGGGAGTTGAATGCAAGCCTCACAAAGAAGTTTCTGAGAAGGCTTCTGTTTAGTTTTTATGTGAAGATAATCCCGTTTGCATAGAAATCTTCACAGAGTTTCCCCTATCCCCGGGTAGG;SVTYPE=DEL;CHR2=1;END=121475386;SVLEN=-119197 GT ./. E1521782 contig8 size284 2 cov1.06 2384 33 14.030303030303 2 56 953 6 17 1 52 136 1 0 0 0 62 0 0 0 0 11 0 11 0
1 144038447 N . <INV> 7 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGTTCTATTGTACTTAAGCATTTATACAAACATTAGCTCCCTTAATCATCATAGTTGTAAATGGGACAAATCTTTTTTTTTTTTTTTTTTTGGGGTTTTTTTTTTTTTTTAATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACTCGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCTCCCACCCCACC;SVTYPE=INV;CHR2=1;END=207579511;SVLEN=63541065 GT ./. E1826813 contig1 size262 2 cov1.15 213 16 11.125 2 40.5 72 5 1.4 0 0 187 80 54.925 75 58.3333333333333 28 14 55.7142857142857 13 60 3 0 4 0
1 144038448 N . <INV> 6 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATTTTACAATAAATTATGGTTCTATTGTACTAAAGCATTTATACAAACATTAGCTCCCTTAATCATCATAGTTGTAAATGGGACAAATCTTTTTTTTTTTTTTTTTTTTTGTGGTTTTTTTTTTTTTTAATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACTCGTCATCTAGCATTAGGTATATCTC;SVTYPE=INV;CHR2=1;END=207579511;SVLEN=63541064 GT ./. E2492959 contig2 size246 2 cov1.23 228 18 12.7222222222222 2 40.5 77 6 1.16666666666667 0 0 187 80 54.925 75 58.3333333333333 28 14 55.7142857142857 13 60 3 0 4 0
1 148850702 N . <TRA> 30 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATTTCATCACATTTCATCATTTCATCATTTCACTTCATCTCATCATATCTTCTTTCATTGCATTATTTCATTTCATCTCATCATTTCATTTCATCATTTCACTTCATCTCATCATTTCATCACATCATTTCATTTCATCTCATCATTTCATTTCATTCTTTCATCATTTCATCTCAACATTTCATTTCATCATTTCACTTCATCTCATCATATCATCATTTCATCTCATGTTTTCCTCTCTTCTCATTACATCTTCTCATCTCATTTATTTATTTATTGTC;SVTYPE=TRA;CHR2=7;END=65118276;SVLEN=0 GT ./. E2296937 contig1 size285 2 cov1.06 858 1 8 0 0 283 1 60 1 60 152 1 0 0 0 60 0 0 0 0 12 0 12 0
1 152797833 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATCTATGCACACATATATATGCACACACATATATGCACCCATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACA;SVTYPE=TRA;CHR2=11;END=24623806;SVLEN=0 GT ./. E3075439 contig1 size407 3 cov1.11 145 0 0 0 0 43 0 0 0 0 230 90 28.0666666666667 47 48.7446808510638 52 12 32.6666666666667 7 48.7142857142857 19 1 4 0
1 152797885 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATCTATGCACACATATATATGCACACACATATATGCACCCATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACA;SVTYPE=TRA;CHR2=11;END=24623806;SVLEN=0 GT ./. E3075439 contig1 size407 3 cov1.11 151 1 40 1 40 43 0 0 0 0 230 90 28.0666666666667 47 48.7446808510638 52 12 32.6666666666667 7 48.7142857142857 19 1 4 0
1 153492747 N . <TRA> 1 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTCATCTCTCCCCCCCTCTTTTCTTTCTCTCTCTCTCTCTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCCTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCTTCTTCCTTCCTCTTTCTTTCCTTTCTCTTTTTTTTTCTTTTTTCTCTTTTTTCTTTTTTTTTTCTTTTTT;SVTYPE=TRA;CHR2=X;END=488245;SVLEN=0 GT ./. E3440176 contig1 size274 2 cov1.10 194 0 0 0 0 68 0 0 0 0 241 11 4.72727272727273 0 0 113 3 3.66666666666667 0 0 4 0 3 0
1 153492776 N . <TRA> 1 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTCATCTCTCCCCCCCTCTTTTCTTTCTCTCTCTCTCTCTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCCTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCTTCTTCCTTCCTCTTTCTTTCCTTTCTCTTTTTTTTTCTTTTTTCTCTTTTTTCTTTTTTTTTTCTTTTTT;SVTYPE=TRA;CHR2=X;END=488245;SVLEN=0 GT ./. E3440176 contig1 size274 2 cov1.10 210 1 60 1 60 74 0 0 0 0 241 11 4.72727272727273 0 0 113 3 3.66666666666667 0 0 4 0 3 0
1 159020405 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGATTTGATACTGATTAACTTCATTGGGAATGGGTTTCCTAATGTTATGGAAAATTGGCCACATTGATGAGTTCATTAGAGTTAAGTCCATCAGAGTTAAAGCCATCACTCACAGGTGGCCAATATCATCTTCCAGGTCAGATCACATTGCTGGTCTGTGGAGGCAGCCGTCCTGCCTCCACGGACCAGCAGTGCTCAATATGACCTGACCTGGGTAGAAAGGAGTAAAACTGAGATTCTTCTAAAATCTCATCTCTTTTGGGAGTCACTTCATGGCAGCTTTGCCTTTACCCTCTGCTTCCCCATACCTCTTGATAGGGGATATGCCTTTTCTTTATGGGTTAATTCTCATTAAAAAAGAAATATTCTTCCTTCCACTCTCATAAAACAATGAAGATAATAAAATTACTCCTTACATCTTTTT;SVTYPE=DEL;CHR2=1;END=159021041;SVLEN=-636 GT ./. E635004 contig1 size425 8 cov2.84 150 11 57.9090909090909 11 57.9090909090909 32 0 0 0 0 104 11 55.1818181818182 11 55.1818181818182 38 0 0 0 0 770 186 719 211
1 169058929 N . <TRA> 16 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATAATTATAAAATAAAATAAATAAAAATTATTTGTATGTTTATAT;SVTYPE=TRA;CHR2=17;END=68814448;SVLEN=0 GT ./. E2365637 contig2 size281 2 cov1.07 86 66 43.030303030303 57 48.4912280701754 28 30 39.2666666666667 22 46.3636363636364 4 0 0 0 0 28 0 0 0 0 5 0 5 0
1 169058983 N . <TRA> 16 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATAATTATAAAATAAAATAAATAAAAATTATTTGTATGTTTATAT;SVTYPE=TRA;CHR2=17;END=68814448;SVLEN=0 GT ./. E2365637 contig2 size281 2 cov1.07 289 61 35.1147540983607 38 51.1842105263158 86 17 46.1764705882353 13 55.5384615384615 4 0 0 0 0 28 0 0 0 0 5 0 5 0
1 178390249 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGTATCTCATAAATACTATTATTATCACCATTTTATAGATGAGGAATCTGAAGTACAGAGAGGTTAAATAATCTTGCCCAGGGTCACACAGCTAATAAGTAGTAGAGCTAAGATTTGAACTCAGGTCTGCCTCTCATATTTGATACTCTTATTTATGTTTTACTTTTTTTTTCCAGTAAGTGACTTTTTTTCACTTATCTACCTA;SVTYPE=DEL;CHR2=1;END=178390697;SVLEN=-448 GT ./. E863136 contig2 size205 5 cov3.68 164 13 57.8461538461538 13 57.8461538461538 51 1 60 1 60 156 17 60 17 60 38 1 59 1 59 804 240 875 240
1 182899674 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTACTCCAGCCTGGGTGACAGAATGAGACTCCATCTCAAAAAAGAAAAAAAAAATTTTATATATATATATATATATATATATATATATATATATATACACACACACTAAAAATACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC;SVTYPE=TRA;CHR2=4;END=83762541;SVLEN=0 GT ./. E39669 contig2 size189 2 cov1.60 57 0 0 0 0 23 0 0 0 0 74 0 0 0 0 12 0 0 0 0 11 1 3 0
1 182899726 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTACTCCAGCCTGGGTGACAGAATGAGACTCCATCTCAAAAAAGAAAAAAAAAATTTTATATATATATATATATATATATATATATATATATATATACACACACACTAAAAATACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC;SVTYPE=TRA;CHR2=4;END=83762541;SVLEN=0 GT ./. E39669 contig2 size189 2 cov1.60 63 0 0 0 0 28 1 60 1 60 74 0 0 0 0 12 0 0 0 0 11 1 3 0
1 193267778 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAGAGACAGAGACAGGGAGAAAGAGAGAGACGGACAGAGAAAGACAGAGATGGACAGAGAGACAGAGAGAAACAGACAGAAAGAGAGAGAGACAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAGGGAAACAGACAGAAAGGGAGGGGGGCAGGGAGAGAGAGAGACACACACACAGACGGACAGGCAGAGGAGGAGAGTAAAACAAAAGATACACACAGAGAGGGAGAGACAGAGAGAGAGAGAGACAGAGACA;SVTYPE=TRA;CHR2=5;END=1206478;SVLEN=0 GT ./. E1848082 contig1 size284 2 cov1.06 612 4 1.75 0 0 215 1 0 0 0 60 0 0 0 0 38 0 0 0 0 15 1 4 0
1 202311701 N . <TRA> 42 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACAAAGTAGGTAGGGTAGTGAATTCCTTCATCACTGGAAATGTTCAAGTGGAAGTTAGGTCATCACTTGTTAGGGATAGTGCAGAAAGGATCCTTGCACTGGGTGGCAGTTTGGAATAGATGACTTTTTTTTTTTTTTTTTTTGGGAAGGAGTCGTCGTCTGTCACCCAGGAGGGAAAGCAGCGGGGCGATCTCAGCTCACTGCAACATCTCCCTCCTGGGTTCAAGCGATTCTCCTGCCGCCGCCTTCTGTAGACCGGCGTCCCCAGCC;SVTYPE=TRA;CHR2=14;END=29595029;SVLEN=0 GT ./. E1039341 contig1 size271 2 cov1.11 111 23 58 23 58 24 1 60 1 60 121 0 0 0 0 35 0 0 0 0 0 0 0 0
1 207937205 N . <TRA> 38.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACATTAGAGCCTACACAGTTTAGTTGGTACATTTCATTCTTTTAAGGTTCAAATAAGGGATTTTATTTTCCAGTGAGTTTCCTTGCATTGTTAACAAGTCAACAGCGTTAACGTATGATTTTTTGGTTTTTTTTTTTTTTTTTTACTTTTTATTTTTGGTCTACCCTTCTCATTTATTCCCTTTGTTACA;SVTYPE=TRA;CHR2=12;END=4166895;SVLEN=0 GT ./. E313823 contig1 size191 2 cov1.58 133 12 54 11 58.9090909090909 37 1 60 1 60 133 0 0 0 0 39 0 0 0 0 0 1 1 0
1 207981233 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGAGGAGAGAGGAGGAAGGAGGGTAAGAGGGAGGGAGGGACTCGGGAGAAGAGGTGGAGGAGGAAGTTTCACAGTCTAGTGCATTCCCATCAGATCAGAGAGAGGAATTCATAGAGAAGTCTGACTGCCCTAAGGTTGTTTCCCCTTTTTCCATTTTTTGGAAAATATACACTTCTGCTTTTAACTGTTCCACATTCTGTACCTATCCTTAATACCTTGCTTGAAGAAAGTGTTCCACTGCA;SVTYPE=DEL;CHR2=1;END=208014818;SVLEN=-33585 GT ./. E3008621 contig4 size245 6 cov3.70 117 10 58.7 10 58.7 35 0 0 0 0 53 12 59.1666666666667 12 59.1666666666667 35 0 0 0 0 7 0 7 0
1 209496915 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCGAGATCTACACTCTTTCCCTACGCGACGCTCTTCCGATCTAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATTTCATATATATGTATGTGTATATATATGTGTGTGTGGTGTGTGTATATACAGAGAGGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATC;SVTYPE=TRA;CHR2=4;END=7900536;SVLEN=0 GT ./. E1986945 contig1 size194 2 cov1.56 130 0 0 0 0 30 0 0 0 0 77 14 58.5714285714286 14 58.5714285714286 35 0 0 0 0 0 0 0 1
1 212301323 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCACCCCTGCCCTGCGCTTCCCGGCTCGGGTCCCCGCCCCCTGCCCCCAAATCCTTTTTTTTTTTTTTTTTTTTTTGTTCAGGTGGTCTCGCTCTGTCATCCAGGCTGGAGTGCAGTGGCGCGACCTCAACTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCTTTCCTCAGCCTCCCAAGTAGCATGAGCCACCACGCCCACCTAATTTTTGGCTTGTTTTTTTTTTTTTTTTTTTTGTTTTTGGTAGGGGCGGTCCTCGTGCCCTCGCGGCGTC;SVTYPE=TRA;CHR2=3;END=25855313;SVLEN=0 GT ./. E3662122 contig1 size283 2 cov1.07 147 13 53.2307692307692 12 57.6666666666667 40 1 60 1 60 278 1 60 1 60 38 0 0 0 0 1 0 2 0
1 220075406 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTTTTTTCGTACCCTCTGTTCTTTAGAGAAGATGCAAGTACAGTAAATGGAAAGGGGGAAAAAAACTATTTTAAGGAATGGCTCCATCACTATAGAAAGAAATATGATGTTTCCTTTTTTTTTTTTTTTTTTTTGTCTTTTCCCTTCTTTTGGTCACAAGATGGTTATCATAGCTCTGTGCATGTAATCTGCATTCAAGTGAAAAAGAAGAGAGAAAGGGAAATAAGAGTTATATCTCTTCTTTTTGTGAAGAAAAAAAATGAAG;SVTYPE=TRA;CHR2=17;END=37631054;SVLEN=0 GT ./. E553840 contig1 size268 2 cov1.13 163 9 57.1111111111111 9 57.1111111111111 37 1 60 1 60 115 6 40.3333333333333 4 57.75 49 1 60 1 60 0 0 0 1
1 224782795 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGCAGCCACATGGGGCAGGCTCTGGAAAAGGAAGTTTATTACACTCACAGGTCCTGGAAGCAGGAGGTGTGGCACACAGGACCACAAGGGAAAGCACCAGTGTAGGTCAGGAGGCAGAAAGGGCCAGAGTGAGGGAAAATCTAGGCCACGGCCTTTACTGGGGTTTGCACAGGAAAGGTCAGGCGGAGCAGCATAAACAGTTTTGGATTGGGCAATTTGCATTATAAATGGCAGGCTTTGGGCTCTCTAGGGATGGTCTCTAGTTGCCTGGTACCTGGCTCTGGGAAGACTAAGGCAGAGGAATATTGCTTCTTGTAGTGTGCAGGTCCCATAGAAGAGATGTGACTAGATAGGCCAGCCCCTGCAAGGGCAGTCTCTCTCTATCCAGAAAGAGTTATAAGATAAACATCAAAATATACTGAAAATAAAAATATAAGCACACATTGTTTTACTGCACTTTGCTTTATTGTGCCTTGCAGATATTGTATTTTTTACAAATTGAAGGTTCATGAGAACCTTGTGTTGAGCAAGTCTGTCAGCACCATTTCTCCAACATCATGTGCTTGCCTCATGTCTCTGTGTCATATTTTGGTAATTCTCACAATATTTCAAATTTGCCCTGTTGTCAGGCCTATAGTAGAACTTCTTTTGGAGTTGCTTCTTATGGATGAGCAAAGAAAGTGGTTTCTTGAGATGAAATCTACTCCTGGTGAAGATGCTATGAATATCGTTGAACTGACAACAAAAGATTTACAATATTACATAAACTTGGTTAATAAAGTAGTGGCAGGGTATGAAAGAATTGACCCCAATTTTAAAAGAAGTTCTACTATAGGCAAAATGCTATCAAACAGCATTGCATGCTACAGAGAGATCTTTCACGAAAGGAAGAGTCAACTGAGGTGGCAAACTTCATTGTTGTCTTATTTTAGGAAATTGACACAGCCACCCCAACCTTCAGCAACCACCACGTTGATCAGTCAGCAGCCATCAACATGCAGGCAAGACCCTCCACCAGCAAAAAGATTAAGACTTGCTGAAGGCTCAGATGACTGTTAGCATTTTTTAGCAATAAAGTATTTTCAAATTAAGGTTTGTACATTATTATTTTAGACTGAATACTATTGCACATTGAATGGACCACAGTATAGTATAAACATAACTTATATGCCCTGGGAAACCAAAA;SVTYPE=DEL;CHR2=1;END=224786034;SVLEN=-3239 GT ./. E1494957 contig2 size1188 96 cov12.20 220 66 44.2878787878788 55 50.5090909090909 53 0 0 0 0 160 65 39.5230769230769 46 52.7826086956522 52 0 0 0 0 57 0 48 0
1 243066888 N . <TRA> 47 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAAAGCAAAATTACGACTAAAAAAAAAAAAAAAAAAAAAAACGGAACTCAATACAAAAAAATCAACTGAAAACAAAAGAAGGCAGTAATTTTAAAAACAGCAGGCAAGCCAGGTGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGATCAGGAGTTCAAGACCAGCTTGGCCAACATGGTGAGACCTCTGCCTCTATAAGAAAATACCAAAAAATTAGCCAAGCCTGGTGGCGCATGCCTGTAGTCCCAG;SVTYPE=TRA;CHR2=21;END=33264612;SVLEN=0 GT ./. E475201 contig1 size281 2 cov1.07 139 14 54 13 56.3076923076923 36 0 0 0 0 95 0 0 0 0 34 0 0 0 0 1 0 0 0
10 7059511 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATTGAGCACCAACTGTGAACCTGCACACGCATGTATTTTGCTCCATTGGTTTATCCCCACTCAAGGGCAATACACATTCAAAGCATAAAAATTACATGACCTATGATATTTATTTTGCTAAGATTTTTCACAAAACCCCATCATCATCAGAGATAAGGTAACTCCTGGAGAGACATCACACTCTTTGCAGGTTTGGAATGCCCAGTTCCCATCCTTGCTC;SVTYPE=TRA;CHR2=19;END=17396811;SVLEN=0 GT ./. E978440 contig2 size221 14 cov9.57 76 42 59.4047619047619 42 59.4047619047619 50 0 0 0 0 113 41 58.5121951219512 41 58.5121951219512 32 0 0 0 0 54 0 56 0
10 7634373 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACTGCATTGCCTCCCAATAAAAGAAAAAGGAACAGAACAAAAAAGAATACAGCAACTAAAAACCACAATGAGATAACATCTCACGCCAGTCAGAATGGTGGTTATTCAAAAGTCAGGAAACAATAGATGCTGGAAATAAGACAGCGACAGAGAAGAACAGAGATAGAGGAGACAGAGACAGACAGACAGAATACTCAGAGAGGGACAGAGAGAAAGAGAGAAACAGAAAGAGTAGGGGAAAGAGGAAAATAGAGGGGAGGAGAAAGAGACAGAGAGG;SVTYPE=TRA;CHR2=18;END=9868617;SVLEN=0 GT ./. E4382573 contig1 size280 11 cov5.93 80 19 60 19 60 25 0 0 0 0 86 14 50.8571428571429 12 58 51 0 0 0 0 43 0 40 0
10 10526100 N . <TRA> 24 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGCGAGCGGGAGAGGGAGAACGAGAGAGGGGGGCGGCGGGAGACACGGAGAGAGCAAGTGAGAGAGAGGAGGGGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAGAAAGAAAACGAGCGAGGGAGAGAGCGAGAGAGCGAGAGCGAGAGAGAGAGAGAGAGCGAAAGAGCGAAAGGGAGAGAGAGAGAGAGGAAGAGGGAAAAAAAAGGAGCAAAAAAAAAGCAAGGCAAAAGCCACAAGAAAAAACGAAGACGG;SVTYPE=TRA;CHR2=7;END=141431623;SVLEN=0 GT ./. E2881762 contig1 size279 2 cov1.08 58 0 0 0 0 16 0 0 0 0 236 0 0 0 0 51 0 0 0 0 5 0 4 0
10 12157946 N . <TRA> 38 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTTGCCTAGGCTGGCATGCAGCGGCATAATCTTAGCTCACTGCAACCTTTGCCTACTGAGTTCAAGCAAGGCCTCAGCCTCCGACGTAGCTGGGACTATTAGGTGTGTGCCACCACACCCAGCAATTTTTTTTTTTTTTTTTTTGGGACAGGGTTTCACTCAGTCCTTCATGCTGGGGTTTGTTTGGTTGGATTCAACTCACTGCCATGTCCGGCTTCCGGGGTCAGGCCCTTCCCCTTCCGTAGGCTCCCAAGTTGCTGGGCCT;SVTYPE=TRA;CHR2=17;END=36503550;SVLEN=0 GT ./. E3371806 contig1 size268 2 cov1.13 92 9 60 9 60 44 1 60 1 60 94 2 60 2 60 44 1 60 1 60 0 0 0 0
10 27111822 N . <TRA> 0.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGCCTCTCACTCACTCACTCTCTAAAAATACCCTAACATTTTTGGACTGCGGTTCGGTTCACTCGGTAACTGAAATCACAGAAAGTGAAACTGCAGATAAGGGGAGATTGTTACAGAGTATCAGTTGGGGAAGATGAAAAAATTCTTGAGATCTATAGTAGTGATGGTTGCTCATGTACATTGAGCAGCAAATGTACTTAATGCTACTGAACTGTACGCTTAAAAATGGTTAAAATGGTCATTTTTATGTTATATTTTACAACAATAAAAGACATACTTTT;SVTYPE=TRA;CHR2=13;END=78420555;SVLEN=0 GT ./. E3640208 contig1 size283 3 cov1.60 94 12 4 0 0 55 2 7 0 0 272 1 0 0 0 97 2 0 0 0 5 0 4 0
10 30061913 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCTCTCTCTCCTTCTGTCTGTTTCTCTGTCTCTCTGTCTGTCTCTCTCTCTCTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTTTCTCTCTCTCTGTCTCTGTCTCTCTCTCTTAGTTCGGAAGTGCACACGTCTGAACTCCAGCCACGTTCCGATCTCGTATGCCGTCTTCTGCTTGCTGTATGTCTTTCTCCCTCCATGTCTCTCTCTCTCTCTCACTCCCTCTCTCTCGG;SVTYPE=TRA;CHR2=8;END=9340968;SVLEN=0 GT ./. E1006595 contig1 size270 2 cov1.12 295 18 7.44444444444444 2 60 85 5 0.2 0 0 173 0 0 0 0 62 1 0 0 0 3 0 4 0
10 33386463 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACTTTGTAAAATATTTAAAGAGATTTATTCTGAGCTAAATGTAAGGACCATGATCTGTGACACAACCTCAAGAGGTCCTGAGAACATGTGCCCAAGGTGGTTGGGTGACAGCCTGGTTTTATATGTTTTAGGGAGACATAAGATATCAATCAGTACATGTGAGGTACATATTGGTTTGGTCTGGAAAGGCAAGACAATGTGGAGCTGTGGGGGAGGTGGTGAGGAAAAGGGCTTCCAGGTCATAGGTAGATTTAAAGATTTTCTGATTAGCAATTGGTTTAAAGAGTTAAGTTATTATCTAAAGACTGGGAATCAATAGAAAAGAGTGTCTGGGTTAAGATAACGGGCTGTAGAAACCAAGGTTTTTATTATGTAGATGAAGTCTCGTAGGTTGCAGCCCTTAGATACAATAGATGGCAAATGCTTGCTATTCAGATCTTTAAAAGGGGGAGAATATAATGAGCCATGTCCAACAGCCCCCACTTCCGATCATGGTCTAAATTAGTTTTTCAGGTTTCTTTGGAATCATTTTTGCCAAAAGGGAGATCCATTTGGTTGGTTGGGGGGCTTAGAATTTTTTTGGTTTACATTCTTATATGTTTTAAAGGTTTTTTTCATCTTCTCTCTCATCTGGAGACCCCAGGGCTCCTCTCCAGGGTTCTTCCTCTGCATGGCCTTCTAGATCTCCTTGCTCTGAACTTAGAGTACTTATTGTCAATTGTTAAATTAACGACATTGTTTTTATTATCACCTTATCTTTTTATTTGTTGCAGATCTGTTTAAGCAGACTGTAGATGTATTGACATTAAAGAACTCAGTTTCCTCATATTCTCATGTAGCTTATCGAATGCCATGTGTATATAATGAGTACTCAAATATTTGTTAAAAGATTTATTTACTGCCTGTAAA;SVTYPE=DEL;CHR2=10;END=36119061;SVLEN=-2732598 GT ./. E1557344 contig1 size911 43 cov7.13 98 20 51.85 19 53.1052631578947 43 0 0 0 0 60 7 55.2857142857143 7 55.2857142857143 31 0 0 0 0 7 0 14 0
10 33386464 N . <DEL> 55.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTAACAAATATTTGAGTACTCATTATATACACATGGCATTCGATAAGCTACATGAGAATATGAGGAAACTGAGTTCTTTAATGTCAATACATCTACAGTCTACTTAAACAGATCTGCAACAAATAAAAAGATAAGGTGATAATAAAAACAATGTCGTTAATTTAACAATTGAAAATAAGTACTCTAAGTTCAGAGCAAGGAGATCTAGAAGGCCATGCAGAGGAAGAACCCTGGAGAGGAGCCCTGGGGTCTCCAGATGAGAGAGAAGATGAAAAAAACCTTTAAAACATATAAGAATGTAAACCAAAAAAATGCTAAGCACCCCAACCAA;SVTYPE=DEL;CHR2=10;END=36119061;SVLEN=-2732597 GT ./. E1557344 contig2 size333 3 cov1.36 98 20 51.85 19 53.1052631578947 44 0 0 0 0 60 7 55.2857142857143 7 55.2857142857143 31 0 0 0 0 7 0 14 0
10 38773332 N . <INV> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAGGAATGGAATGGACTTAAATGGAATAGAATGGAATGGAAAGGAATGGACTCAAATGAAATGGAATAGAATGGACTTGAATGGAATGGAATGGACACGAGTGGAATGGAATGGAATGGACTCGAAAGAATGGAATGGAATTCAATTGAATAGAATGGAAAAGAACAGGAAGGAATGGAATGGAATGGACTCGAATGGAATGGAATGGACTCAAGTGGAATGGAATGGAATGGACTCAAATTGAATGGAATGGACTCGAATGGAACAGAATGGAATGGAATGGAATGGACACGAATGGAATGAAATGGAATGGACAAGAATGGAATGGAATGGAATGGAAAGGAATGGCA;SVTYPE=INV;CHR2=10;END=42812941;SVLEN=4039610 GT ./. E3322294 contig2 size351 9 cov3.87 396 45 7.22222222222222 4 41.5 128 12 6.5 1 60 971 8 7.625 1 60 298 7 8.57142857142857 1 60 3 0 4 0
10 38774477 N . <DEL> 21 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGAATGGAATAGAATGGAATCGAATGGAATGGACATGAATGGAATGGAATGTCCTTGAACAGCATGAAATGAAATGGAATGGAATCGAATGGAATTTACTGGATTGGAGTCCAATGAAATGGACTCTAATGGAATGGGATGGACTCGAATGCTATAAAACGGAATCGGATGGACTCGAATGGAATGGAGTGGAATTGACATGAATGGAATAGAATGGAATACAATGTAATGGACTGGACTGGAATGGAA;SVTYPE=DEL;CHR2=10;END=38802095;SVLEN=-27618 GT ./. E4430345 contig1 size250 2 cov1.21 714 43 4.76744186046512 2 50 240 16 4 0 0 179 9 1.22222222222222 0 0 74 2 4.5 0 0 24 2 27 2
10 38779847 N . <DUP> 43.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAATGCAATGGAATGGAAAGGGCTCGAATGGAATGGACTCCAAAGGACTGGCATCGAATGCAATGGAATCGAATGGAATGGAATCCAATGTAATAGGACGGATTGGAATGAACTCAGATGCAATTGACTGCAAAGGAAAGGTCTCGAATGGAATGTAACGGAATGCAACGTACTCGAATGGAATGGACTCGAATGGAAAGGAATGGATTGGAATGGAATCAAATGGAATCGGTTGGAATAGCATGGATTTGAACCAAATGGAAAGAAATGGAATAGAATGAAAT;SVTYPE=DUP;CHR2=10;END=39145025;SVLEN=365178 GT ./. E2910704 contig1 size284 2 cov1.06 1676 81 2.1358024691358 0 0 556 15 4.06666666666667 1 30 550 85 1.69411764705882 0 0 214 28 1.10714285714286 0 0 13 1 21 0
10 38782059 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGAATGGAATCAAACGGAATGGAATGGAAAGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCAACTCGATTGCAATCGAATGGAATGGAATGGAATTAACCCGAATAGAATGGAATGGAATGGAATGGAATGCAATGGAATGGAATCATCCGGAATGGAATGGAATGGAATGGAATGGAATCCATTGCAAGGGACTGGAAGGGAATGGAATGGAATCGAATGGAATGGCATAGAATCGAAAAGAATGGAATGCAATAGAATGGAA;SVTYPE=INV;CHR2=10;END=39085101;SVLEN=303043 GT ./. E3587814 contig5 size286 2 cov1.06 4712 9 3.11111111111111 0 0 1532 4 0 0 0 5245 1412 0.618980169971671 2 40.5 1764 455 0.795604395604396 3 43.3333333333333 7 0 7 0
10 38783765 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCCTTCAAGTCCGTTCCATTCCATTCCATTCAAATCCATTCCAATCCATTCCATTGTATTCCATTCGAATCCATTCCATTCCATTCCATAGCATTCCATTTCATTACTTTCTAGTCCATTCAATTGGATTTTATTCCACTCGAGTCCATTCCATTCCATTCTACACGAATCCATTCCATTCCATTCTATTCTGTTTTTTCGATTCCATTTCATTCCATTCCATTCCGTTATAGTCCATTCCATTCCATTCGAGTCCATTCCTTTCCAAATCATTCAAGT;SVTYPE=INV;CHR2=10;END=42802358;SVLEN=4018594 GT ./. E4045774 contig1 size281 2 cov1.07 681 151 6.28476821192053 9 40.3333333333333 244 50 7.9 4 40.5 499 10 10.6 1 60 163 8 27.25 4 52 5 0 5 0
10 38796315 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAATGGAATGGAATGGAATGGAATGGACTCGAATGCAATTAAATGTACTCGAATGAAATGGAATGGAATGCAGTGGAATGGACTCAAATGGAATAGAGTGAAATTTTCCGGTTTGTAAACTAATGGTATGGACTCTATTGGAATGGAATGGAATGGACTCGAATGGAAGAGAATAGAATAGAATGGATTCAAATGGAATAGAATGGAATGGACACGAAAGATACAGAATGGAATGGGATGGAATGGAATGGACTGGAAGGGAAGGGAATTGAGTGGAGTGGAAT;SVTYPE=DUP;CHR2=10;END=38873223;SVLEN=76908 GT ./. E263684 contig3 size285 2 cov1.06 176 1 0 0 0 73 1 4 0 0 4005 17 13.5294117647059 4 48.75 1427 2 17 1 34 14 1 9 0
10 38799611 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATGTAATAGAATGAAGGGGAGTAGAATGGCATGGAATGGAATGGACAAGAATGTAAAGGAATGGAATGGAATGGAATATAATGGAATAAAATGGAATGGACTCGAATGGAATGGAATTGAATGGAATGCACTCAAATGGAATGGAATTGATTTGAATGGAATGTACTCTAAAGGAATGGAATGGAATGGAATGGATTGCACATAAATGGACTGGAACGCAATTGAAACGGGCTCGAATGGAATGGAATTTATTACACACAGATGGATTGGAATGCAATTGAAATGGACTCGAATGGAATGGACTCAAATGGAATGGAATGGAGTTGAACGGACTAGAAACGAATGGAATGGAATGGAATGGAATTGA;SVTYPE=DEL;CHR2=10;END=39126809;SVLEN=-327198 GT ./. E298729 contig1 size369 4 cov1.64 111 31 4.67741935483871 1 49 53 14 4.64285714285714 0 0 1998 24 0.458333333333333 0 0 614 11 0.727272727272727 0 0 4 0 4 0
10 38799669 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATGTAATAGAATGAAGGGGAGTAGAATGGCATGGAATGGAATGGACAAGAATGTAAAGGAATGGAATGGAATGGAATATAATGGAATAAAATGGAATGGACTCGAATGGAATGGAATTGAATGGAATGCACTCAAATGGAATGGAATTGATTTGAATGGAATGTACTCTAAAGGAATGGAATGGAATGGAATGGATTGCACATAAATGGACTGGAACGCAATTGAAACGGGCTCGAATGGAATGGAATTTATTACACACAGATGGATTGGAATGCAATTGAAATGGACTCGAATGGAATGGACTCAAATGGAATGGAATGGAGTTGAACGGACTAGAAACGAATGGAATGGAATGGAATGGAATTGA;SVTYPE=DEL;CHR2=10;END=39126848;SVLEN=-327179 GT ./. E298729 contig1 size369 4 cov1.64 390 1 0 0 0 168 0 0 0 0 1664 106 3.47169811320755 3 39 501 29 2.72413793103448 1 39 4 0 4 0
10 38800337 N . <INV> 18.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCCATTCCATTCCATTCCATTCCGTTCCATTCCTTTCCCTTCCCTTCCGTCCGATTCCATTCCCTTCCATTCCATTCCATTCCATTCCATTGCAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCGATTCCATTCCATTCCGTTCCATTGGAGTCCATTCCATTCCATTCCATTCCATTCCATTCGTGTCCATTCTGTACCATTATATTCCGATCTATTCAAATCCATTCAATTCCATTGCATTCCATTCGAATCCATTCCTC;SVTYPE=INV;CHR2=10;END=42356143;SVLEN=3555805 GT ./. E3872720 contig1 size284 2 cov1.06 744 39 1.61538461538462 0 0 256 10 0 0 0 31585 964 5.19813278008299 61 38.5737704918033 10106 361 4.3601108033241 15 39.2666666666667 14 1 3 0
10 38808674 N . <DEL> 7 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGAATGGAATTGAATGGAAAGTACTAGAATGGAATGGAATGGAATCGAAAAGAATAGAATGGAGTGGAATGGAACGGAATGGAGTGGAATGCAATAAACACCCGGGGAATGAAGTGGATTGGAATGAAATGGAATGGAAAGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGGATGGAATGGAATGGAATGGAGTGGAATGGAGTGGAATGGAATGGAGTGGAAAGGAATGGAAGAGAATGGAAAGGGAA;SVTYPE=DEL;CHR2=10;END=39146568;SVLEN=-337894 GT ./. E121245 contig3 size286 2 cov1.06 639 17 1.35294117647059 0 0 222 8 2.375 0 0 1139 29 3.62068965517241 2 40 432 2 3.5 0 0 4 0 4 0
10 38808862 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGAGTGGAGTGGAGTGGAATTGAATCAAATGGACTGAAAAGGAAAGGAATGGATTGGAATGCGGTGGAGTGGAATGAACTTGAATGGAATGTACTGGAACGGAATAGACTCGAAGGGAATGGACTCGAATCAAATGGAATCAAATGGAAAGCAATGGAATGGAATGGACTTGAATGGATTGGACAGGAATGGAATGGACTGGAATGGAATGGAATCGAATGGAATAGAATGAGATCGGAAGGGCACACGTCTGAACGACAGTAACGGACAGAA;SVTYPE=INV;CHR2=10;END=39109498;SVLEN=300637 GT ./. E4074295 contig1 size275 2 cov1.10 3783 38 3.57894736842105 1 40 1251 16 1 0 0 1270 71 3.73239436619718 2 35 476 22 12.4545454545455 3 60 3 0 3 0
10 38810831 N . <INV> 3 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTCACTCCATTCCATTGCATTCCATTCCCTTCCTTCCGCGACCGTTCCATTCTATTCCATTCCATTAAATTCCATTCAATTCCACTCCATTACAGTCCATTTCATTCCACTCCATTCCATTAGAGTCCGTTACATTCTATTCCACTCGAGTCCATTCTATTCCAAAACAATGAAGTCCATTCCATTCCATGCATTTCCATTCCATTCCATTCGAGTACATTCAATTCCATCCCTTTC;SVTYPE=INV;CHR2=10;END=42376360;SVLEN=3565528 GT ./. E4266597 contig1 size241 2 cov1.25 817 21 5.23809523809524 1 50 328 7 5.57142857142857 0 0 7352 58 3.51724137931034 2 34 2526 18 5.27777777777778 1 40 4 0 4 0
10 38813662 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCCATTCCATTCCATTCCACTCGCGTTGATTCGATTCCATTTAATTCCTTTTCACTCCATCCCATTTCATTCCATTCCATTCCATTCCACTGGGGTTGATTAGATTCCATGGAATTCCATTTCACTCCATTCCATTCCATTCCATTCGATTGCAATCGAGTTGAATCCATTCCATTCCATTCCACTCCCTGCCGACCCCATCCATGACGGGTGAGTCCATGCCGTTGCGTCCCATGCCATTCCGATCTACTCGGGTTGATTCCATTCCATTCCATTCCAA;SVTYPE=INV;CHR2=10;END=42358122;SVLEN=3544459 GT ./. E895937 contig3 size284 2 cov1.06 998 17 6.05882352941176 1 60 384 3 0 0 0 3865 5 15 1 60 1148 1 0 0 0 8 0 5 0
10 38813872 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGGAATGGAATGGACTCGAATGGAATGGACTGAAATGGAACAGATTCAAAGGGAATGGAATTGAATGGAAGGGACTCGAATGGAATAAAATGGAATGGAATGGAATGGACACGAATAGAATGGACTGAAATGGAATGGAATCAATTGGAAGGACTCGGATGGGATGTAATCGAACGGAAAGGAAACAA;SVTYPE=DUP;CHR2=10;END=39118092;SVLEN=304220 GT ./. E2601798 contig1 size189 2 cov1.60 991 32 2.75 0 0 357 5 1.6 0 0 44709 32 7.125 1 60 19865 10 2.5 0 0 14 0 13 0
10 38814121 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGGAAAGATATCCAATGGAATGGAATGGACTCAAAGGGAATGGACTGGAATGAAACGGACTCGAATGGAATGGACTGGAGTGGAATGGATTTGAATGGAATGGAAACTAATGGAATGGAATGGAATGGAATGGAAAGAATAGAATTGAATGGAATCGGATGGAACGGAATGGTATGGAATGGAGTTGACTGGAATAGATTCGAATGGAATGTTATTGAATGGAATGGAATGCACTCAAATGGAATGGAAACAAAT;SVTYPE=DUP;CHR2=10;END=39130456;SVLEN=316335 GT ./. E3963445 contig1 size257 2 cov1.18 521 19 1.68421052631579 0 0 208 9 2.55555555555556 0 0 2792 24 2.375 0 0 1030 10 4.8 1 39 5 0 4 0
10 38814124 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCAATGGACTCGAAAGTAATAGACTTGAAAGGAATGGAATCAAATGGAATGGAATCGAATGGAATGCAATAGTATGGAAGAGAATCGAATGTAATAGAATCAAATGGAATGGACTGGAATGGAATGGCCTCGAATAGAATGGAATGCAATTGAATGGACTCTAATGGAATGGAATCAAATGGGATGGAAGTGAAGGGAATTGAATCGCAGGGAACGGAAAGGAATT;SVTYPE=DUP;CHR2=10;END=39141033;SVLEN=326909 GT ./. E3761088 contig2 size226 2 cov1.34 865 63 0.587301587301587 0 0 330 24 0.75 0 0 3317 139 9.9568345323741 10 43.7 1132 40 10.85 3 37.6666666666667 9 0 3 0
10 38816984 N . <INV> 12 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATCTCGTGCCATTCCATTATATTCGATTCCATTCCATTCCATTCCATTGCAGTCTATTTCATTCCATTCCATTCGAGTACATTCCATTCCATTCCATGCCATGACATTCCATTCGATTTCATTCTATTCCATTGCATTCATTTCAATTCCGTTTCATTCCGTTACATTGAATTCGAATCCATTGCATTCCATTCCATTCCATTCCATTCGTTTCCGTCCCATTCCATTCCAATCCGTTCGATTCCAATCCATTTGAGACCTTTCCATTCCATTTCATTCCCTTCGTGTCCATTTGATTCGATTTCATTCCATTATATTCTATT;SVTYPE=INV;CHR2=10;END=39079424;SVLEN=262439 GT ./. E579660 contig2 size327 7 cov3.23 1073 27 5.96296296296296 2 44.5 567 6 5.66666666666667 0 0 11988 13 1.76923076923077 0 0 4495 5 8 1 35 15 1 11 0
10 38817048 N . <INV> 12 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTCGATTTCATTCTATTCCATTGCATTCATTTCAATTCCGTTTCATTCCGTTACATTGAATTCGAATCCATTGCATTCCATTCCATTCCATTCCATTCGTTTCCGTCCCATTCCATTCCAATCCGTTCGATTCCAATCCATTTGAGCCCTTTCCATTCCATTTCATTCCCTTCGTGTCCATTTGATTCGATTTCATTCCATTATATTCTATTCCATTCGATTCCATTCCATTCCAGTCTATTACATTCAAG;SVTYPE=INV;CHR2=10;END=39079424;SVLEN=262375 GT ./. E2884760 contig2 size255 2 cov1.18 1524 29 5.79310344827586 2 60 677 12 1.58333333333333 0 0 11988 13 1.76923076923077 0 0 4495 5 8 1 35 14 1 11 0
10 38818187 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGATTCGAATTTAATGCAATGGAATGTAATGGAATGGAACGGACACAAACGGTATGGAATGGAATGGAACGGACTCGAAAGCAATGTAATGGAATGTAATGGACTAGAAAGGAATTGAAAGGAATGGAATGGAATTGACTGGAATGGATTGGAATCGAATGGAAGGGAATGGAATGGACTCCAATGGAATGGAATGTTCTTGGAGGGAATGGAATGGAATGAAAACGACTCGAGTGGAA;SVTYPE=INV;CHR2=10;END=42804581;SVLEN=3986395 GT ./. E3447687 contig2 size240 2 cov1.26 1285 31 5.03225806451613 2 57.5 667 10 4.6 0 0 3418 4 0 0 0 1083 2 1.5 0 0 8 0 16 0
10 38869150 N . <DEL> 23 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAAAGGAATGGAATGGACTCTAATGACGTGGAATAGAATGGAATCAAATGGAATGGAATGGAATCTAGTTGAATTTAATGGAGTAGAATGGACTTGATTGGAATGGAGTGGAATGGAGGGGAAAGGGGTTCAATGGAATGGAAGGGAATTGAATGGATTCGAGTGGAACAGAATGTAGTGGTTTGGAATGGACTAAATGGAGTCGAAACAAATGGAATGGAATGGAATGAAACGGACTCAAAAGGAATGGAA;SVTYPE=DEL;CHR2=10;END=38874808;SVLEN=-5658 GT ./. E2461359 contig2 size254 3 cov1.78 1425 89 7.39325842696629 3 34 479 39 4.69230769230769 1 36 1750 109 11.1743119266055 2 38 521 34 13 3 41.6666666666667 18 0 13 0
10 38870439 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCAACTCGATTGGAATGGAATGGAATTAACCCGAATAGAATGGAATGTAATGGAATGGAACGGAACGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGACCCGACTGGAGGGGAAGGGAATGGAATGGAATGGAATTGTGTGGAATGGAATGGAATGCAATGGAGCGTAAAGGAATTGAATAGAATCCACCCGAATGGAAAAGAATGGTATAGAACGTAAAGGAATGGAATGGAATGGAATGGAATGGAATCAACTCGAGTGGAATGGA;SVTYPE=INV;CHR2=10;END=42365979;SVLEN=3495539 GT ./. E413247 contig2 size286 2 cov1.06 570 14 5.21428571428571 1 60 204 10 1.1 0 0 14382 310 4.84516129032258 11 41.3636363636364 4637 124 4.5 5 35.8 14 1 3 0
10 38870960 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTATTTAATTAGAGTCCAATCCATTCATTTCCATTCCATTCGAGTCCAATCCATTCCATTTGAGTCCATTCCATTCCACTCCATTCTATTCGAGTCCATTCCACTCCATTCCTTTCCATTTCCGTCCATTCCATTCCAATCTATTCCTTTCGGTTCCATTCCATTCAATTCCATTTTATTCCATTCCATTCCATTCGTGTCCATTC;SVTYPE=INV;CHR2=10;END=42801971;SVLEN=3931010 GT ./. E3483017 contig1 size207 2 cov1.46 1959 2 0 0 0 600 0 0 0 0 1175 44 5.59090909090909 0 0 347 15 6.8 0 0 13 0 10 0
10 38871208 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCGTTCCATTCCATTCCATTACATTCGGATTGATTCTATTCAATTCCCTTACACTCCATTACATTCCATTCCATTCGGGTAGTTTCCATTCCATTCCATTCCATTCCTCTCCATTCCATTGCACTCGAGTTGATTCCATTCCATTGCATTCCATTCCATTCCATCCAATCCCTTCCGGTCCCTTCCCATCCAATACATTCCAATTCACACGATTCCATTCCAATTCACTCCAATACATTCCAATCCATTTGATTCGTTTCGATTCCATTCCATTCGCTCC;SVTYPE=INV;CHR2=10;END=42366392;SVLEN=3495183 GT ./. E554869 contig8 size282 2 cov1.07 783 5 0.4 0 0 259 0 0 0 0 42157 1724 1.63399071925754 20 40.3 13483 545 1.48256880733945 7 41.2857142857143 13 1 3 0
10 38879347 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGGAGTCCACATTGAATGAAAATGAAAGGAGTCATAATCTAATGGAATCGAAGGGAATCATCATCAAATGGAATCGGATGGAATCATTGAACAGAATTGAATGGAATCGTCATCGAATGAATTGAATGCAATCATCGAATGGTCTCGAATGGAATCATCTTCAAATGGAAAGGAATGGAATCATCCCAGAGAATGGAATAGAGTCATCATTGAATGGAGTCAAACGGAATCATCGAATGGACTCAAATGGAAGCATCATGGAATGGAAGCAGAA;SVTYPE=DUP;CHR2=10;END=42387252;SVLEN=3507905 GT ./. E1690525 contig1 size276 2 cov1.09 912 0 0 0 0 337 2 3 0 0 182914 577 12.5944540727903 116 36.698275862069 57332 153 13.1176470588235 32 35.46875 20 1 5 0
10 39078345 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTATTCAATTCCATTCCCTTACATTGCATTATATTTGATCCCATTCCATTCGACTCTAGTACTTTCAACTCCATTCCATTCCATTCCGTTCCATCCAATTCCATTTCATTCTATTCGTTTCCCTCCGATTCCATTCCATTCCATTCCTTTCCATTCTACTCGGTTTGATTCCATTTCGTTCCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCCACTTGGGTTGTTTCCTTTCCATTCCATTCCTTTAGTTTCCATTCCATTCATT;SVTYPE=DEL;CHR2=10;END=42369794;SVLEN=-3291449 GT ./. E4256702 contig9 size284 2 cov1.06 1277 0 0 0 0 582 1 60 1 60 5823 17 4.17647058823529 1 37 1929 11 18.2727272727273 4 43.25 5 0 5 0
10 39080689 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATCAATGGGATGGAAGGGAATGGAATTGAAAGGTATGGAATTGCAAAGAAAGGAATCCCCCCGAGTGCAGGGGAATGGAATGGAATAGAATGCAATGGAATGGAATCATACGGAATGGAATGGAATGGAATTGAATGGAATGGAATGGAATGGAATGCAATTAACCCGAATAGAATGGAATTGAATGGAATGGAAAGGAATGGAATGGAATAGAATGGAAAGGAATCACCCCAAGTGCAGGGGAATGTAATGGAATGGAATGCAGTGGAATGGACTCATC;SVTYPE=DUP;CHR2=10;END=39100511;SVLEN=19822 GT ./. E1574545 contig1 size281 2 cov1.07 1764 1 2 0 0 579 2 1.5 0 0 1204 19 1.63157894736842 0 0 448 5 1 0 0 5 0 9 0
10 39081297 N . <DUP> 15 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCCATTTCATTACATTCCATTTGAATATATTCCATTCAAATAAATTACATTGCAATCCATTACATTCCATTCAGTCCTATTCCAGTCTATTCCATTCCAGTCCACTCCATTCGATTCCATTCCATTCGATTCCATTCCAGTCTATTCCACTTCGATCCATTCCAATCCATT;SVTYPE=DUP;CHR2=10;END=39089671;SVLEN=8374 GT ./. E2204847 contig1 size174 3 cov2.60 802 76 5.18421052631579 3 47.3333333333333 401 18 1.72222222222222 0 0 344 47 13.2127659574468 1 60 146 11 12.5454545454545 0 0 22 1 14 1
10 39081392 N . <DUP> 15 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCCATTTCATTACATTCCATTTGAATATATTCCATTCAAATAAATTACATTGCAATCCATTACATTCCATTCAGTCCTATTCCAGTCTATTCCATTCCAGTCCACTCCATTCGATTCCATTCCATTCGATTCCATTCCAGTCTATTCCACTTCGATCCATTCCAATCCATT;SVTYPE=DUP;CHR2=10;END=39089671;SVLEN=8279 GT ./. E2204847 contig1 size174 3 cov2.60 1551 61 5.54098360655738 2 52.5 605 23 5.43478260869565 0 0 344 47 13.2127659574468 1 60 146 11 12.5454545454545 0 0 23 1 16 1
10 39084428 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGAGTCTACTACCTTCCATTCCCTCCCACTCCCCTCCATTCCATTCCATTCACTTCAGGAAGATTCCATTCCATTGCATTCCACTCCCTTCCATTTCCCTGCCCTCGCGTTGATTCCATTCCATGACATTCCATTCCATTCCATTCCATTACATTCGGATTGATTCTAATCAATTCCCTTGCACTCCATTACATTCCATTCAATTCGGGTAGTTTCCATTCCATTCCATTCCATTCCTCTCCATTCCATTGCACTCGGTTTGTTTACATTCCATTGCATTCCGTT;SVTYPE=DUP;CHR2=10;END=42816211;SVLEN=3731783 GT ./. E2783822 contig1 size286 2 cov1.06 288 13 5.15384615384615 1 60 104 4 14 1 40 996 55 2.12727272727273 0 0 355 17 6.70588235294118 1 60 3 0 6 0
10 39085562 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCGCCTGTCCTTTCCCTTCCACTCCATTCCATTCCTTTCCGGTGCAGTCCTTTCCATTCCCTTCCATTCCATTTCATTCCATTCCATTCCATTCCTTTCCATTCCATTTCGTTCCACCAGGATGGAATCCATTCCATTCCATTTCATTCCATTCCATTTCATTCCATTCCATTCGATTGGATTCCGTTCCATTCCATTCCATTCCGTTCCATTCCGTTCCGTTTAATTCCATTCCATTCCATTCTATTCGGGTTAATTCCATTCCATTCCATTCGATTGCAAT;SVTYPE=DUP;CHR2=10;END=42374442;SVLEN=3288880 GT ./. E863208 contig2 size284 2 cov1.06 1440 9 4 1 31 573 2 32 1 60 8344 52 3.57692307692308 0 0 3011 16 1.3125 0 0 13 1 9 0
10 39090276 N . <INV> 1 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTCAAGTCCATCACATTCGTGTCCATTCCATTCCATTCCAATCCATTCGATGCCATTCCATTGGATTCTATTCCTTTCGACTCCATTCCATTCCATTCCTTTCCAACCATTTCCATTCACTTCCATCCGTTTCAATTCCATTCTGTTCCTTTCCATTCCATTCCAGTCAATACCATTCCTTTGGGTTCCATTCCATTCGATGAAATTCCCTTCTATTCCATTCCATTCCATTCGATGCCATTCCATTCAAATCCATTCC;SVTYPE=INV;CHR2=10;END=39139697;SVLEN=49422 GT ./. E1374406 contig1 size260 3 cov1.74 739 39 7.69230769230769 5 43.8 255 14 17.4285714285714 5 42.8 2080 8 7.75 1 60 849 4 0 0 0 20 1 27 0
10 39090454 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCAGTTCATTCCATTCCATTACATTGCATTCCATTCCATTCCAATCGGGTTGATTTCATTCCATTCCATTCCATTCTAATCCATTCCATTCCGTCCCAATCCCTTCCATTCCATTCCATTCCATTCCCTTCCCTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCGATACCTTTCCATTACGCTCCATTCCATTCTCTTCTTTTCGATTCCATTCAATTCCGTTCCATTCGATTCCATTCATTTCAACTCCATTCCATTCGAGTGCATTCCATTCCATA;SVTYPE=DUP;CHR2=10;END=42379478;SVLEN=3289024 GT ./. E1270920 contig1 size286 2 cov1.06 269 1 0 0 0 140 2 0 0 0 7531 47 7.1063829787234 6 35 2508 23 11.5217391304348 4 47.5 6 0 3 0
10 39092911 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATTCCACTTTTGTTGATTCCATTCCATTCCATTCCATTCCATTCCTTTGCTTTCCCTTTCACACGGGTTGATTCCATTCCATTCCATTCCATTCCATTGCATTGCATTCCATTCCTTTCCATTCTAGTTGATTCCATTCCATTCCATTCCAATGAAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTCGGGTTAATTCCATTCCATTCCATTCCATTCCATTCCCTAGTTTTCCTTTCCATTCGTTTCCATTCCT;SVTYPE=DEL;CHR2=10;END=42366242;SVLEN=-3273331 GT ./. E555980 contig15 size285 2 cov1.06 8585 25 0.2 0 0 3449 4 0 0 0 845 34 0.176470588235294 0 0 291 5 8.4 1 40 14 1 6 0
10 39095501 N . <DEL> 1 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTCCATTCCATTTCTTTATGTTCTATTCCATTCCGTTCGATTCCATTTTATTCCAGTCCATTCCATTCGAGTCCATTGCATTCCAGTGCAATTCATTTGATTCCACTCCATTCGATTCTATTCCACTCAATTCCCCTCCGTTCCATTCCTTTGCGTTCCTTTCTATTCCATTCCATTGCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTCAT;SVTYPE=DEL;CHR2=10;END=42375499;SVLEN=-3279998 GT ./. E2250969 contig1 size230 3 cov1.97 190 6 8 1 37 93 4 19.5 1 60 10142 517 5.89555125725339 40 44.15 3358 195 6.1025641025641 16 44.0625 3 0 5 0
10 39113541 N . <DUP> 4 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCCATTCTCTTCCATTTCATTCGAGTTGCTTCCTTTCGAGTTGCTTCCCTTCCCTTCCTTTCCCTTCCATCCCCTTGCACTCCGCTTCCTTCCTTTCCATTCCATTCCATTTCATTCCATTCCATTCCATTCCATTTCATTCCATTCCATTCCATTCGTGTCCATTCCACTGCAGTCCATTCCATTCGTGTCCATTCCATTCCAGTCCATTCGATTTGTGTCCACTGCATTCAATTCCACTCCATTCCATATTATTCCATTACACTCCATTCCATTC;SVTYPE=DUP;CHR2=10;END=42357296;SVLEN=3243755 GT ./. E1062554 contig11 size279 2 cov1.08 351 24 0.0416666666666667 0 0 166 15 5.33333333333333 1 60 10183 301 5.00332225913621 18 37.0555555555556 3376 117 4.26495726495726 6 44.5 4 0 3 0
10 39117944 N . <INV> 14 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGAATGGAATGGAATGGAATGAAATGAACTCGAATGGAATGGAATGCAATGGACCTTAAAGGAATGGAATGGAATGGAATGGAAAGGAGTCAAATGGAATTGAATATAATGGACTGGAGTGGAATGGAATGGAATGGAATGGACTCGAATGCAATTAAATGTACTCGAATGAAATGGAATGGAATGCAGTGGAATGGACTCAAATGGAATAGAGTGAAATTTTCCGGTTTGTAATCTAATGGTATGGACTCTATTGGAATGGAATGGAATG;SVTYPE=INV;CHR2=10;END=42814384;SVLEN=3696439 GT ./. E2393428 contig1 size271 2 cov1.11 686 51 0.843137254901961 0 0 228 7 1.42857142857143 0 0 440 34 1.73529411764706 0 0 158 8 2.375 0 0 3 0 7 0
10 39145031 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGTTCCATTCCAGTCCATTCCATTCCATTCCATGACCTTCCATTGGATATCTTTCCATTACACTCCATTCCATTCTATTCCTTTCAATTCCAATCAATTCCATTCCATTTGATTCTATTCCAATCGATTCCCTTCCATTCGTTTCCATTCAATGATTCCATTTGATTCCTTTTGATGATTATTCCAT;SVTYPE=DEL;CHR2=10;END=42597520;SVLEN=-3452489 GT ./. E1599744 contig2 size187 3 cov2.42 1328 43 0 0 0 460 11 0.181818181818182 0 0 220385 384 28.4166666666667 247 39.4574898785425 68186 100 30.98 72 39.5833333333333 3 0 3 0
10 39148962 N . <INV> 1 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAGAATGCAATGGAATGCAATGCAATCTTATTGAATGGAATGGAATCCAATGTAATGGAATGGAATGTACTGGAATTGAATGGACTCCAGTGGAATAGAATCAAATGGAATGGAATGGAATGGAATGGAATGGAATCGAATTGAATGAAACGGATTCAAAAGGAATGGATTGGATCGGAACGAAATGGAATGGAATGGAACGGACTCGAATGTAATCGAATGGATTGCAATGGACTCAAATGCAATGGAGTCGAAAAATATGGAATTGAAAGGAATGCAATCAAACCAAATGTAACCCTTTGGAATGGAATGGAATGGACTAGAATGGACTGGAAAGC;SVTYPE=INV;CHR2=10;END=42801721;SVLEN=3652758 GT ./. E1473105 contig1 size339 3 cov1.34 1606 7 33.2857142857143 4 55.75 482 3 0 0 0 1518 38 3.73684210526316 2 50 526 9 5.88888888888889 1 40 6 0 4 0
10 42363431 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATTCCACTCGGTTTGATTACATTCCGTTGAATTCCATTCCATTCCTTTCGAGTTGATTCCATTACATTACATTACATTACATTACATTACATTACATTACATTACATTACATTCCACTCGGTTTAATTTCATTCTGTTGAATTCCATTCCATTCCTTTCCAGTTGATTCCATTCC;SVTYPE=DUP;CHR2=10;END=42797578;SVLEN=434147 GT ./. E133323 contig1 size179 2 cov1.69 48263 380 4.97105263157895 19 37.6842105263158 15500 105 3.00952380952381 2 32 320 8 0.5 0 0 146 1 0 0 0 13 0 17 0
10 42368071 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATTCATGTCCATTCCATTCCATTCCATTCATTTCCATTCGAGTCCATTCTTTTCCATTCCATTAGGGTACATTCCAATTTATTCCAATTGAGTCAATTCCATTCTATTCAATTTGAGTCCAATCCATTCCACTGCGTTTGAATCCATTCCATTCCATTCCATTCTATTCCAATCCATTCCATTACATTCAATTCAATTCCTTGTCAATTCTAT;SVTYPE=DEL;CHR2=10;END=42808129;SVLEN=-440058 GT ./. E1968957 contig2 size214 2 cov1.41 4380 76 1.30263157894737 2 35 1669 28 3.10714285714286 0 0 595 11 5.63636363636364 1 60 249 7 10.7142857142857 1 60 6 0 8 0
10 42375150 N . <TRA> 1 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTGCATTCCATTCCATTCCTTTCTGTTCCATTCAATTCCATTCCATTCCATTCTATTCGTGTTAATTCCATTCCATTCTATTCCATTCCATTCCATTGAAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCTTTCCATCCCATTCCATTCCTTTCCCTCCCCTCCCATCCCCTCCCCTCCCATTCCATCCCATCCCATCCCCCTCCCTCCCCTCC;SVTYPE=TRA;CHR2=5;END=68317837;SVLEN=0 GT ./. E1986233 contig8 size262 2 cov1.15 6421 29 0.275862068965517 0 0 2275 6 0 0 0 40 1 60 1 60 16 1 60 1 60 15 0 3 0
10 42859703 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAAATTATCCAGGTGTGGTGTTGTATGCCTGTAATCCCAGCTATTCGGGAGGCCGAGGCAGGAGAATCGCTTGATCCCAGGAGGTGGAGGTTACAGTGAGCAGATGTCTTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTACATCTAAAAAATAACATAATAAAATAAAATAAAAACATTATAAGGGGCTTATATCTTATAATTCATCAAGAAAAGCCAAAGTATCTATCCCTTTCAGAAAATAAACATGTAATTTAATTATGTTCATAACAAATCATTTAGTAAACAATTAATCATATGTGAACACTTCCAGGAGGCGCAAAGTCCCAGCTCCTAAAACTTAACATTACCCTCAAACACCCAGATGGCAGCATATGGAATAGAGTTATTCACTTTCACAAGTTCTCTCTTTTGAAAAAAAGAATA;SVTYPE=DUP;CHR2=10;END=82577187;SVLEN=39717484 GT ./. E3442435 contig4 size434 5 cov1.74 1900 29 37.0689655172414 15 48 546 10 42.9 9 46.6666666666667 79 63 2.68253968253968 0 0 34 19 3.63157894736842 0 0 11 1 11 1
10 60477224 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAACTTCCAATACTATGTTGAATAGGAGTGGTGAGAGAGGACATTCTTGTCTTGTGCTGGTTTGCAAAGGGAATCCTTCCAGGTTTGCCCATTCAGTATGATATTGGCTGTGCGTTCTCATTAATAGCTCTTATTATTTTGAGATATGTTCCATCAATACCTAGTTTATTGAATGTTATTAGCATGAAGGGTTGTTGAATTTTATTGAAGGCTTTTCCTGCATCTAATGAGATAATTATGTGGTTTTCATCATTGGTTCTGTTTATGTGATGGATTACATTCATTGATTTGCATATGTTGAACCAGCCTTGCATCCCGGGGATGAAGCCGACTTGATCATGGTGAATAAGATTTTTAATGTGCTGCTGGATTCAGTTTGCCAGTATTTTATTGAGGATTTTCGCATTGATGTTCATCAGGGATATTGGCCTGAAATTTTCTTTTTTTTTTTTAATCTCTGCCAGGTTTTGGTATCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGACCACGTCGGCCCAGCCGCCGTCGGAGGAGGAGCGGGAGCCGTGGGAGCCGTGGACGCAGCTGCGCCTGTCGGGCCACCTGAAGCCGCTGCACTACAATCTGATGCTCACCGCCTTCATGGAGAACTTCACCTTCTCCGGGGAGGTCAACGTGGAGATCGCGGCATCAAATCTGTTGAAATGTATATTATAGCCATATCCTACATATACATGCAATGGTATTTCATGCAGCTACAAAAATAATGGTATTACTGTTTACGTGCTTATATAGAAGAAGTTCTCTGCTTATTTTTTTAACTCTTATTTAAACTTAACTTGTCATACTTTGTTATTAATATACAAAGACAATAAACTTTTAAAACACTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACACATTCAAAAGCTAGCAGAAGACAAGAAATAACTAAAGTCAGAGCAGAACTGAAAGAGACAGAGAATTGAAAAACCCTTCGAAAAATCAATGAATCCAGGAGGTGGTTTTTTTTTTAAAAATTAACAAAATAGATAGACCACTAACCAGACTAATAAAAAGAGAAGAATGAAATAGACACAATAAAAAATGATAAAGGGGAGATCACCACTGAACCCACAGAAATACAAACTACCATCAGTGAATACTATAAACACCTCTATGCAAATAAGCTAGAAAATCTACAAGAAATGGATAAATTCTTAGACACATACACCCTCCAAAGACTAAACCAGGAAGACGTCGAATCCCTGAATAGACCAAAAACAAGTTCTGAAATTGAGGCAGTAACTGATATCCTACCAACCAAAAAAAGCCCAGAACCAGATGGATTCACAGCTAAATTCTACCAGAGGTACAAAGAGGAAGTGGTACCATTCCTTATGAAACTATTCCCAACAATAGAAAAAGAGTGACTCCTCTCTAACTCATTTTATGAGACCAGCATCATCCTGATACCAAAACCTGGCAGAGATTAAAAAAAAAAA;SVTYPE=TRA;CHR2=3;END=25400602;SVLEN=0 GT ./. E3103918 contig1 size1634 168 cov15.53 88 59 40.9322033898305 42 55 30 0 0 0 0 383 48 38.4791666666667 35 48.3714285714286 34 0 0 0 0 153 0 115 0
10 60477422 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGTTTAAATAAGAGTTAAAAAAATAAGCAGAGAACTTCTTCTATATAAGCACGTAAACAGTAATACCATTATTTTTGTAGCTGCATGAAATACCATTGCATGTATATGTAGGATATGGCTATAATATACATTTCAACAGATTTGATGCCGCGATCTCCACGTTGACCTCCCCGGAGAAGGTGAAGTTCTCCATGAAGGCGGTGAGCATCAGATTGTAGTGCAGCGGCTTCAGGTGGCCCGA;SVTYPE=TRA;CHR2=12;END=72667074;SVLEN=0 GT ./. E20059 contig2 size242 12 cov7.49 166 60 59.4833333333333 60 59.4833333333333 47 0 0 0 0 140 55 59.1454545454545 55 59.1454545454545 33 0 0 0 0 9 1 15 0
10 62229266 N . <TRA> 11 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTAGTGTATATATATATATATATACACACCACTTTTAATGTATATATATATACACATACACACACACACAGTGCTTTTTAGTATATACTATATATATATAGTGGTATGTGTGTGTATGTATATATATATATATGGGGGTATATATATATATATGGGGGTATATATATATATAGGGTGGTCTATATATATCTTTGGGTATATATATATATATATCGTGGTATATATATATATATATATATATATATATATATATATATATATGGTGGTATATATATATAGTGG;SVTYPE=TRA;CHR2=1;END=222093673;SVLEN=0 GT ./. E3162124 contig2 size284 2 cov1.06 35 0 0 0 0 22 0 0 0 0 100 0 0 0 0 16 0 0 0 0 5 0 11 0
10 73519588 N . <TRA> 3 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACTGGCGTGGGGCGCTAGGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATGTGTGTGTGTATGTATATATGTGTGTGTGTATGTATATATGTGTGTGTGTGTATATATACACACACACACATATATACACACACACACACACATATACACACACACACACATATATACACACACACACACACACACACACACACACACACACACACACACACACACAAGATAGCTAGCGTCTCACGCCAGTCACAATAGCT;SVTYPE=TRA;CHR2=13;END=70260237;SVLEN=0 GT ./. E200129 contig1 size283 2 cov1.07 69 1 36 1 36 25 0 0 0 0 99 4 38 3 46.6666666666667 28 0 0 0 0 3 0 6 0
10 80228382 N . <TRA> 3 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAACAAAATGAAAAGTCTCCCATGTCTACCTCTTTCTACACAGACACGGCAACCATCCGATTCTCAATCTTTTCCCCACCTTTCCCCCCTTTCTATTCTACAAAACCGCCATTGTCCTCATGGCCCGTTCTCAATGAGCTGTTGGGTACACCTCCCAGACCGGGTGGTGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCGGGCGGAGGGGCTCCTCCCTTCCCAGTGGGGGCGGCCGGGCGGAGGCGGCCCTGC;SVTYPE=TRA;CHR2=17;END=56151214;SVLEN=0 GT ./. E3018158 contig4 size268 2 cov1.13 134 4 2.75 0 0 52 2 43.5 2 43.5 171 20 39.85 13 55.3846153846154 85 6 25 2 58.5 9 0 7 0
10 82093159 N . <TRA> 3 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTGGGATTACAGGCGTGAGCCACCACACCCAGCCAATAATAATTTAATTATACATTTTATAATAATGAAATGAGTATAACTGGATTGTTTGTAACACAAAGGATAAAATCTTGAGGAGATGAATACCCCATTTGCCATGATGTGATTATTATACATTGCAT;SVTYPE=TRA;CHR2=7;END=153127688;SVLEN=0 GT ./. E66742 contig1 size162 2 cov1.86 93 51 6.31372549019608 0 0 41 10 2.1 0 0 96 15 0 0 0 41 3 0 0 0 5 0 5 0
10 83641806 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACCCTTGCCCTGGGAATCTCTTGCAGTTTTCTTGTCTATATGATTCAGTTTCTTTTTTTATGCTTTAAAAAACAACTTACCTTTTGGAGTTTCTTCAAAGCATTCAACTACATTTTAATAGAAACTACAATTATCTTTCATATTATAAAATCAAGTTTATAATTTTTATTTTTGTAACAATTTATGTCAGTATTCATCACAGAAAAGCATATTCCTCTTTTTCCTTCTGAC;SVTYPE=DEL;CHR2=10;END=83827666;SVLEN=-185860 GT ./. E3381763 contig2 size231 4 cov2.61 107 5 60 5 60 52 0 0 0 0 84 3 60 3 60 47 0 0 0 0 5 0 5 0
10 89700299 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGATCACACCACAGCACTCTAGCCTAGAGCCTCCCTGTGTGGCAGGCTCTACACTTCAGATAGGCAACAGATCGAGACCTTGTTTCACAAAACGAACAGATCTGCAAAGATCAACCTGTCCTAAGTCATATAATCTCTTTGTGTAAGAGATTATACTTTGTGTAAGAGGTCCACCAGAGGAGTTCAGCAATTTGCTGCTCTTAGGGCAGGGATCAATTCCTTAATATCTTAGGAAGACTAGGTATTGACAGTAATGGTGACAAAGCAATGAAAAGGAAAGGAAGAAGTGATAAGACATGGCAGCAAGCTGAAGTATGATGAGTAAAGAATAGGAATCAAAGTATGTGGAGTGTTAGAGAAAACCTGGATTTAGATCCAGATTCTAGTCCTATCTCTGTCATTAATCTATTGCGTAACCCTGAGCATATCATCTACCTCTCTTTGAGTTTGCTTGTCAATAAAATGAAGAGACTTTGAAATCTGAGACTTCCTGGATAAGTACTAAATACAGATTATGTCACTGATGTCTGCCTCTATTTATTTCTCCCTTTTACCCTAATCTCTATAAGTCTACCTCAGTCATCCTGATCCTATTCTACTTCTCTGATGTTGTTGTCAGATAGGTGTGATCATCCTCATCAGATCTTTTCTGTATTCTTAGAGACAGATAACTTTATCAAAGACCACAGATTTATTAGTATAGCATGTTAAAGTCTTCTAAAGAGTCTCATTGATGCTCTTTTCATCTCAGTACAATTTTTAAAACTGCTGAATGCAAGGTACTGAGCTGTTGGAAGTGACTGACAGATGAATGTAACAGATTCATAGAGAAGGAAAAAGGAAGAAAAACTCATGCTCTTCCTATAGTATTGATATCAGTGTAAGAGCCAAGAGAAAGGTATAAAGTATCATGCAGATATTAAGGGAAAGAAAACATTCACTTTAGTAATCTTTCCTCA;SVTYPE=DEL;CHR2=10;END=89712341;SVLEN=-12042 GT ./. E3006199 contig1 size960 86 cov13.53 48 46 58.5652173913044 46 58.5652173913044 50 0 0 0 0 0 61 58.7049180327869 61 58.7049180327869 59 0 0 0 0 43 0 40 0
10 104889480 N . <TRA> 0.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACGGCAGCCTCCGCCCGGCCGCCGCCCCGTCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGCCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCACAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGTGGTGGGGGCGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCGCGGCCGGATGGGTGGGCGCCAGCCCCCCGCCCGGCCCGCCGCCCCGTCCC;SVTYPE=TRA;CHR2=7;END=150203478;SVLEN=0 GT ./. E1916178 contig1 size275 2 cov1.10 108 0 0 0 0 36 0 0 0 0 296 4 0 0 0 89 0 0 0 0 4 0 3 0
10 109628605 N . <TRA> 30 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTATGTGTATATATATGAGTATATATATGTGTGTGTGTATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCGGGCAGAAAAGGCAACAGGCAATATAGGGATAGATAATATCATGGAACCTACCAACACTAACTAT;SVTYPE=TRA;CHR2=17;END=52653662;SVLEN=0 GT ./. E3334393 contig1 size201 2 cov1.50 81 3 0 0 0 31 0 0 0 0 46 62 44.1451612903226 50 52.4 15 15 49.4 13 55 10 0 5 0
10 125013984 N . <TRA> 1 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACCACCACCACCACCACCACCGTCGCCATCACCATCATCATCATCCCCCCACCCCCACCACCACAACCATCATCACTATCATCATCATCATCACCACACCACCACCATCACCACCACCACCATCACACCACCACCACCACTGTCGTCATCACTATCATCATCATCACACCACCACCACCACCATCACCACACCACCACCACCGCCACCACCATCATCACTATCATCATCACACCACCACCACCACCATCATCACCATCATCA;SVTYPE=TRA;CHR2=3;END=68176845;SVLEN=0 GT ./. E394917 contig2 size264 2 cov1.14 324 3 39 2 57 149 0 0 0 0 328 1 60 1 60 74 0 0 0 0 3 0 13 1
10 126727725 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTTAGCGCTTATCCACAAGGGCCATTCTTTAGGGAACTTTGCAACTCTGAGATCAAAAGGCAAAGCAGTCCTCTAAGAACTTAGGGGAACTCGCAGGAGTCTGCGTGCATGACGCCACTATGAACCCAATATAAATTTGTTCACAAACTCTATAGTTCACACGATGGGTT;SVTYPE=DEL;CHR2=10;END=126799558;SVLEN=-71833 GT ./. E217284 contig1 size171 2 cov1.77 620 177 1.44632768361582 0 0 219 62 1.38709677419355 0 0 78 103 3.39805825242718 1 53 53 43 2.6046511627907 1 46 17 1 16 1
11 1162660 N . <INV> 38 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAGTGAGTGAGTGAATAGGTGAGTGGGTGAGTGGGTGAGTGGGCGAGTGAGTGAATGGGGGAATGGGTGAGTGAATGGTTGAGTCAGTGAGTGGGTGAGTGAGGGGGGGAGTGGGTGAATGGGTGAGTGGGTGAGTGGGTGAGTGAGTGGGAGAGTGAGTGGGTGGATGAGTGAGTGGGCGAGTGAGTGGGTGGGTGAGTGAGGGGGTGGGTGGGTGAGTGGGCGAGTGAGTGAGTGGGCGAGTGGGTGAGTGGGTGGGTGAGTGGGGGGGTGAGGAGTGGGG;SVTYPE=INV;CHR2=11;END=64983485;SVLEN=63820824 GT ./. E3155152 contig1 size284 2 cov1.06 178 1 2 0 0 54 0 0 0 0 86 0 0 0 0 30 0 0 0 0 4 0 3 0
11 3152705 N . <TRA> 8.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGGGGGGTGGGGGGGTGGATGGATGGATGAATGGGTGGATGGATGGATGGGTGAATGGCTGGGTGGGTGGGTGGATGGATAGATAGTTGAGTGGGCAAATGGATGGATGGATGGGTGGATGGGTGGGTAGATGGATGGATGGATGGATGGATAGATGGATGGATGGATGGATGGACGGACGGATGGGGGGGTGGATGGATGGATGGGTGGATGGGGAGGTGGGGGGAAGGGTGGATGGGGGGAAGGATGGAAGGGAGTGGGGAAGGCGGGGTGGGGGGGAGAGA;SVTYPE=TRA;CHR2=20;END=62123334;SVLEN=0 GT ./. E3048631 contig4 size285 2 cov1.06 91 0 0 0 0 40 1 52 1 52 168 0 0 0 0 41 1 46 1 46 4 0 17 1
11 6153093 N . <TRA> 17.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=17;END=43442995;SVLEN=0 GT ./. E332019 contig1 size286 2 cov1.06 809 1 60 1 60 268 0 0 0 0 129 5 48.8 4 55 48 5 51.6 4 59.25 33 2 3 0
11 6153148 N . <TRA> 17.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=17;END=43442995;SVLEN=0 GT ./. E332019 contig1 size286 2 cov1.06 331 0 0 0 0 102 1 0 0 0 129 5 48.8 4 55 48 5 51.6 4 59.25 33 2 3 0
11 22732056 N . <TRA> 53.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAGACTCTGAATTCACAATTTGCTGCCAACAATGATAAATTATGATGTCATGGAACATGCAGAATATTTGTTGGAAATGAAAAATTCAAGATATATATATATGTGTGTAGATATATGTGTGTGTGTGTGTCTGTGTGTATATATAGATATATATACACACACTGAAGGAAAGGTGTGGGTAAATGAAGAAATATAATTTGGAGAAATTATGCCCAAAATACACAAACTTAAATGGAAAGTATAGCTGTAGATATTAAGGAATG;SVTYPE=TRA;CHR2=7;END=83088266;SVLEN=0 GT ./. E1114601 contig1 size265 2 cov1.14 128 16 60 16 60 36 0 0 0 0 138 0 0 0 0 51 0 0 0 0 3 0 0 1
11 24623866 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATCTATGCACACATATATATGCACACACATATATGCACCCATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACA;SVTYPE=TRA;CHR2=1;END=152797833;SVLEN=0 GT ./. E3075439 contig1 size407 3 cov1.11 509 84 15.6071428571429 25 42.12 86 11 26.3636363636364 6 44.6666666666667 145 0 0 0 0 43 0 0 0 0 4 0 19 1
11 37460103 N . <INV> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATAATGCTTATTTAGAGTTAGCATTGATTACAATTTATGTTTAGGATAAATCACGCTGGAGCCCCTTCTTCCATAGGTACAATAATAATTGCATTTATTATTATGGAAGAATAATAGCAAAAGCTGAAAAAATATTTTAATCTATTTGATAGCCAAATAAACCGGCATATTGTGAAGATTATTAAAACTACTGAAATCCTAGCATTCAAGAGGGGAGGGGCTGGGCACAGTGGCTCAGACCTGTAATCCTAGCACTTTGAGAGGCCTAGGCAGAAGGATCACTAGAGACCAGGTGTTTGAGACCAGCCTGGGAAACATATGGAGACCCTGTCTCTTCAAAAAAAAAAAAATTAATTAGCCGGGGTGTGACGTTTCCCTCCCTGTGTCCATGTGTTCTCACGTTCAACTCCCGCT;SVTYPE=INV;CHR2=11;END=40859239;SVLEN=3399135 GT ./. E304111 contig3 size414 5 cov1.82 124 3 53.6666666666667 3 53.6666666666667 43 0 0 0 0 101 3 44.3333333333333 2 60 43 0 0 0 0 8 0 5 0
11 39523761 N . <TRA> 20 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCCACCCCCACACACACCCACACACAAACACACATATACATCCACACACACCCCCACGCTCACACACACACATATTCATAGACACACTCACACACATCCATATACACCCTCACACACACACACACACAAACATATACATCTTCACACACACCCACGCTCACATACACACATATTCATAGACACATTCACACACATCCATATACACCTTCACACACACACACACACACACATACACATACACACACACACACACACTCACACACACACACACACACACATACA;SVTYPE=TRA;CHR2=6;END=44012489;SVLEN=0 GT ./. E1451986 contig1 size283 2 cov1.07 137 0 0 0 0 42 0 0 0 0 755 3 13 1 39 191 3 20 1 60 3 0 4 0
11 46350245 N . <TRA> 28 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTTCTGTCTTTCTTTCTTTTTCTTTCTTTCTTTCGTTCTTTCTTTCTCTCTCTCTTTCTCTCTTTCTTTCTTGTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTGTCTTTCTTTCTTTTTCTTTCTTTCTTTCGTTCTTTCTTTTTTTTTCTCTTTCTCTCTTTTTTTCTTTTGTTTTTTTCTTTCTTTCTTTTT;SVTYPE=TRA;CHR2=7;END=101133194;SVLEN=0 GT ./. E273050 contig1 size284 2 cov1.06 139 7 1.71428571428571 0 0 43 0 0 0 0 97 0 0 0 0 23 0 0 0 0 8 0 5 0
11 46919573 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGCGGGGCCCGCCGCTGGCCGGTCGGGGCGGCCGGGGGGGGGCGCGCGCCGCCGCCCGGACGGGGCGGCTGGCGGGGCGGCGGGCCGGCGCCCCCACCCCCCTCCCGGACGGGGTGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGAGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGCCCGGCCGGGCAGGGGGGTGACGCCCCGACCTCCCACGCCGGCGGGGGCGCGGGCGGGGCAGCGGGGCGCCTCGCCTCCCCCGCG;SVTYPE=TRA;CHR2=3;END=118437232;SVLEN=0 GT ./. E968616 contig1 size285 2 cov1.06 111 0 0 0 0 45 0 0 0 0 99 2 30 1 60 33 1 0 0 0 3 0 5 0
11 46919684 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGCGGGGCCCGCCGCTGGCCGGTCGGGGCGGCCGGGGGGGGGCGCGCGCCGCCGCCCGGACGGGGCGGCTGGCGGGGCGGCGGGCCGGCGCCCCCACCCCCCTCCCGGACGGGGTGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGAGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGCCCGGCCGGGCAGGGGGGTGACGCCCCGACCTCCCACGCCGGCGGGGGCGCGGGCGGGGCAGCGGGGCGCCTCGCCTCCCCCGCG;SVTYPE=TRA;CHR2=3;END=118437232;SVLEN=0 GT ./. E968616 contig1 size285 2 cov1.06 95 5 32 2 50 38 2 29 1 40 99 2 30 1 60 33 1 0 0 0 3 0 5 0
11 48878105 N . <INV> 10.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAACACACTTTTTGTAGAATCTGCAAATGGATATTTGGACGGCGTTGAGGGCTTCGTTGGAAAGGGGAAAATCTTCACATAAAAACGAAAAAGAAGCATTCTCAGAACGTTCTTTGTGACGTTTGCATTCAACCAACACAGAGATGAACATAACATTTCATAGAGCAGTTTTGAAACACCCTTTTCGTTTAATCTGCAATTGGATATTTGGACTACTTTAAGGACTACGTTGGAAACGGGAATATCTTCATATAAAAACT;SVTYPE=INV;CHR2=11;END=48955612;SVLEN=77508 GT ./. E171298 contig7 size261 2 cov1.16 413 0 0 0 0 158 0 0 0 0 170 21 9.33333333333333 3 48.3333333333333 72 7 8.57142857142857 1 60 15 1 14 1
11 48961135 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCAAAACTGCTCTGTCAAAAGGAAGGTTCTTCTATGTTAGGTGAGTGCATACGTCATAAAGGAGTTTCTGAGAATGTTTCTGTCTAGTGGTTATGGGGAGAGATTTGCTTTTTCACCGAGGGCCTCAGAGCGCGCCAAATATCCACTTGCAGATTCTACAAAAAGAGTGTATCAAAACTGCTCTGTCAAAAGGAAGGTTCTTTTCTGTTAGGTGAGTGCATACGTCATAAAGGAGTATCGGAGAATGCTTCTGTCTAGTGGTTATGGGAAGATGTTTGCTTTTTCA;SVTYPE=DUP;CHR2=11;END=55021850;SVLEN=6060715 GT ./. E2025068 contig5 size286 2 cov1.06 775 42 6.57142857142857 2 38 245 9 9.77777777777778 1 42 110476 100072 2.43045007594532 173 43.7341040462428 36856 33326 2.54542999459881 52 42.9615384615385 9 0 5 0
11 50072654 N . <TRA> 5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGAGGAAGGAGAATGGCGTGAACCCAGGTGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAGGTTTAACTCTATAGGTTGAATCCACACATCACCAAGCAGTTTCACAGATAGCTTCTATCTAGTTTATATCTGGGGATATTTTCTTTATCACCATAGG;SVTYPE=TRA;CHR2=4;END=37231762;SVLEN=0 GT ./. E140073 contig1 size213 2 cov1.42 267 17 5.17647058823529 0 0 59 4 0 0 0 112 1 0 0 0 46 0 0 0 0 8 0 7 0
11 50780247 N . <INV> 5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTCCAACATACGTAAAAAAGTACTGGAAATGAACACTTGCAGATTCTACAAAAAGTATGTTTCAACACTGCTCTATCAAAAGAAAGGTTCAGCGATGTGAATTGAACACACACATCACAAAGGAGTTTCAGAGAATGCTTCTGTCTAGTGTTTAAGTGACGATATTACCTTTTCCCACATAGGCAACA;SVTYPE=INV;CHR2=11;END=55023431;SVLEN=4243183 GT ./. E4051788 contig3 size191 2 cov1.58 479 57 4.50877192982456 1 58 149 20 2.25 0 0 974 495 4.08282828282828 8 38 380 213 3.1924882629108 2 42 3 0 4 0
11 56869836 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAACAAAAAGAAGAAGAAGAAGAAAAAAAAGAAGAAGAAAAAAGAAGAAGGAAGAGGAAGAGGAACAAGAACAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGTATTGCAGGGAAATAGGGAAATGTAAGACCTTCCATTTAGATCCCAAAGACTGATCTCCCAAA;SVTYPE=TRA;CHR2=4;END=47660;SVLEN=0 GT ./. E3684082 contig1 size270 2 cov1.12 85 3 13 0 0 21 0 0 0 0 713 0 0 0 0 208 0 0 0 0 8 0 6 0
11 58171838 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGGGAGAAATACCTAATGCGAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAAATGTATACATATGTAACTAACCGGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAATGCTAGATGTTAAGCACAGCCTAATGAGTGCTAGTTATAATATTAAATATTATTATTGGATAGGTGATAATCTTTTTGTTGGTTTGATAAAGGTGGATGGTGACAAGCAGGGCTGCAGGC;SVTYPE=TRA;CHR2=2;END=116246477;SVLEN=0 GT ./. E2689772 contig3 size263 2 cov1.15 109 80 44.6125 59 59.6779661016949 34 26 44.0384615384615 19 60 128 23 6.78260869565217 4 39 44 7 0 0 0 56 2 7 0
11 69782213 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAAAAAGGAAATAAAATAAGACAAAAAGAGAAAAAAAAGAAAAGGAAGGAAGGAAAGAAGGAAGCAAGAAGAAGGAAGGAAGGAAGGGGAAGAAAAGAAGAAGGAAGGGAGGGAGGAAAGAAAAGAAAGAGAAAAAAGAAAGAAAGAGAGAAAGAAAAGAAAGAAGGGAGGAAGGAAGAAAAAGAAAGAAAAGAAAGAAAAAAGAGAAAGAAAGGGAAAATCTAAGAGTAAATCTTGATCTAGGAAAGCCTTCTTAGATACAACAGCAAAAGCACAAGTAGGT;SVTYPE=TRA;CHR2=6;END=95008249;SVLEN=0 GT ./. E1541643 contig4 size285 2 cov1.06 127 1 18 0 0 46 0 0 0 0 121 12 60 12 60 39 1 60 1 60 9 1 0 0
11 80325525 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAGATTTTTTTTCTATTTCTGTAAAGAATGTTACTGGTATTTTGAAATGAATTTAATTGAATCTGTAGATTGCTATGGATAGTATGGATATTTTAACAATATTGATTTTTCTAATTCATAAAGATTGAATTTTTTTTTTTTTTTTTTTTTTGCTTCTTATGTCTCTTTTATTTATTTTTTCTCATCAGCTTTTATGTTCAAGGGGTGCTTTTGCCATGAGTAAATTGCACATGGTGGGGGTTTGATATACAGATAATTTTGTTATCCAGTTAATG;SVTYPE=TRA;CHR2=X;END=83928631;SVLEN=0 GT ./. E2536892 contig3 size275 2 cov1.10 116 1 60 1 60 46 0 0 0 0 56 12 60 12 60 26 0 0 0 0 0 0 0 0
11 80785602 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTTCTTTCTTCTAATACTTTGGGTTTGTTGTGCAGATGTCATTTACTCTTTTGCTTTCTAATAATTTTATTCATCTATATTTTATTCTATTATTAATCAAATAATATGCAGTGAGCTGATTGCTTTCTATTCCTAAATAGTTACCGCAATTTGAACTGGCACATGGTAGACATTCAATTATCTCTTAAATAAGTAAATGAAGATAAGTGATGTTCACCATCATCATAAATCTCAAAACACTAACATGCTCACAACTCATAGATATACTTAGAATAGTTTAAAATGTTATTCCTTGTAAGTTTAGGCAATGCCCTTGATCCCAAATTATTAGCAATTAAACATTTATTTTAGTCTACTTTT;SVTYPE=DEL;CHR2=11;END=81093780;SVLEN=-308178 GT ./. E507423 contig1 size363 32 cov13.31 137 44 58.6136363636364 44 58.6136363636364 42 0 0 0 0 85 35 58.1714285714286 35 58.1714285714286 43 0 0 0 0 32 0 27 0
11 85041694 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGCTGGAGGCGTACGATCACTGCGAGGAGAGGTGGGGAGGGGGGCGGGTCGGGAGGGGCATAGCATTGGGAGGTATACCTAATGCTATATGACAAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGCGCACATGTACCATAAAACTTAGATTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAATGGTTACCCACTGCCTGCAAATCCTTGGCAAG;SVTYPE=TRA;CHR2=4;END=158907289;SVLEN=0 GT ./. E474657 contig2 size267 2 cov1.13 56 9 32.3333333333333 5 47.8 30 3 13.3333333333333 1 40 232 92 51.0434782608696 78 59.7179487179487 61 24 43.1666666666667 17 60 11 1 13 1
11 85246640 N . <TRA> 22.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCGGTAGCTCCTGGCTATAGTTAGGGTTTTTTGTTTTGTTTCGCTTTTATGGCTGAATACTATTCCAGTGTATGGCTATATTACATTTTGTTTATTCATTCATTGGTTGGTGGCCATTTGGGTTATTTCCTCCTTTGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGT;SVTYPE=TRA;CHR2=2;END=88859625;SVLEN=0 GT ./. E4429275 contig2 size411 7 cov2.57 114 0 0 0 0 48 0 0 0 0 211 1 40 1 40 86 0 0 0 0 4 0 4 0
11 85246752 N . <TRA> 22.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCGGTAGCTCCTGGCTATAGTTAGGGTTTTTTGTTTTGTTTCGCTTTTATGGCTGAATACTATTCCAGTGTATGGCTATATTACATTTTGTTTATTCATTCATTGGTTGGTGGCCATTTGGGTTATTTCCTCCTTTGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGT;SVTYPE=TRA;CHR2=2;END=88859625;SVLEN=0 GT ./. E4429275 contig2 size411 7 cov2.57 160 0 0 0 0 65 0 0 0 0 211 1 40 1 40 86 0 0 0 0 4 0 4 0
11 89637792 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACCTTCTGTGACATTTGGAGTAACATCCCCTAGGATAGTACAAATAATATCACAGGGTGTACATCCCCTGTGACCTGAGGAGTAATATCTTTCTAGAATACTATGAATAGTATCACAATGTATACACCCCGTGTGTCATTAGGAGTAACATCCCACAAAACTATAACGAATAATTTCACAAGGTGTACACCCTCTGCAACATTAAAAGTAACATTTCCCTAGAATATTACGATAATATC;SVTYPE=INV;CHR2=11;END=89672741;SVLEN=34950 GT ./. E3614755 contig1 size241 2 cov1.25 112 2 0 0 0 54 0 0 0 0 132 0 0 0 0 41 0 0 0 0 9 0 9 0
11 89639891 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTAATATCCAGGGGGTAGAGTATGACATTACTCCCAATGTAACAGTGGGTGTACATCCCCCCTGTGATATTTCTCTTAACATTCAAAGGCGGAGAGGATGATATTACTCTCAATCTCGAAGAAAGTGTACACTCCCGAGTGATATTGTTCCTAAT;SVTYPE=INV;CHR2=11;END=89671286;SVLEN=31394 GT ./. E1163772 contig1 size157 2 cov1.92 123 1 0 0 0 44 0 0 0 0 110 1 0 0 0 36 0 0 0 0 3 0 5 0
11 97542045 N . <TRA> 32 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=16;END=7733013;SVLEN=0 GT ./. E1515434 contig2 size292 3 cov1.55 43 1 0 0 0 28 1 60 1 60 52 11 42.2727272727273 8 56.75 19 4 46.5 3 60 5 0 4 0
11 97542047 N . <TRA> 36 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=16;END=7733013;SVLEN=0 GT ./. E1515434 contig2 size292 3 cov1.55 41 2 4 0 0 31 0 0 0 0 52 11 42.2727272727273 8 56.75 19 4 46.5 3 60 5 0 4 0
11 97542101 N . <TRA> 32 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=16;END=7733013;SVLEN=0 GT ./. E1515434 contig2 size292 3 cov1.55 67 0 0 0 0 36 0 0 0 0 52 11 42.2727272727273 8 56.75 19 4 46.5 3 60 5 0 4 0
11 99052297 N . <TRA> 5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTAGTAATCAGTACCTGGGTCATCATGTCTGAGGTGGAGAGTGAATTCATCAACTGGGCAGCAACCACGGCAACAGAAGCCAACCGCAGTCAATGCTGGCTATGCATCAAATTGCCAGAGACCACAGGAAATGGACTGCCTTGCAGAGTTGTCCTTGCCAATATTTCTGAATGGCTCTGTCACTACAAATGGGGCCAAAACAACAACACTTGCAATCCAACCTGGACTTCCTTTGCTACTTTAATAACATCTTAATACACTATAATTGTA;SVTYPE=TRA;CHR2=5;END=94594797;SVLEN=0 GT ./. E1963720 contig2 size272 2 cov1.11 156 12 9.75 1 40 43 3 9 0 0 187 0 0 0 0 84 0 0 0 0 15 0 16 0
11 100400476 N . <TRA> 18 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCAAATGGCCACACTACCTCTCCAGTAAGTTTATAAATCAGTCCAAGATAGCTAAAATTACAGAAATCAAATTCAGAATATGAATAGAAATAAAGATCATTAAAATGCAGAAGTAACTTGAAACTCAATTCAAAAACGTTAAGAATCATAATGAAATGATACAGGAGCTGAGAGACAAAAGAGCAAGTATTAAGAGCATAACTAACCTGAGAGAGCTA;SVTYPE=TRA;CHR2=9;END=83033241;SVLEN=0 GT ./. E4055928 contig1 size222 2 cov1.36 806 66 10.030303030303 1 40 193 14 10 0 0 560 5 6 0 0 112 0 0 0 0 12 0 12 0
12 12476074 N . <TRA> 9 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGAGGGGGGGGGGGGGGGGAAGAAAGGGGGGGGAAGGGGGGGAGAGGAGGGGGGGGAGAGGAGGAGGGGAGGGGGAGGGGAGGGGGAGAGGAGGGGGGGGAGGGGAGGGGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGGGGAGGAGCGGAGGAGGGGGAGGAGAGGAGGAGGAGGAGACGAGGAGGAGGGGGAGGGGAGGAGGAGAGGAGAAGGAG;SVTYPE=TRA;CHR2=6;END=170802335;SVLEN=0 GT ./. E3807073 contig5 size279 2 cov1.08 95 1 0 0 0 29 0 0 0 0 68 0 0 0 0 20 0 0 0 0 22 1 3 0
12 15513754 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACCTATATGTTTATAAGTTAAAACACACACACTATGTGTGTGTATATGTGTGTATATATACGTGTGTATATATGTGTGTATATGTGTGTATATATACGTGTGTATATACACACACATATATACACACGTATATATACACACACATAGTGTGTGTGTGTTTTAACTTATAAACATATAGGTATATGTTTAAACATATACAAATATAAGAGAAAATTTGTATATATTGAAACATATACCAGTATAAGAGAAATTATGATAAATATTTAATAAATAGCTCAAGAATCACTTGCTGCAGAAATTCAGAACATGGGTCGGGCGTGGT;SVTYPE=DEL;CHR2=12;END=15513880;SVLEN=-126 GT ./. E3879447 contig1 size325 7 cov3.25 98 5 36.8 4 44 35 1 60 1 60 68 23 53.695652173913 19 60.9473684210526 20 1 48 1 48 423 160 408 153
12 22210826 N . <TRA> 29.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGAACAAAGCTGAAACATCATTTAAAAAATTACATTAATTCTCCAACTTTAGGCATCTTTTTTTTCTTTTTTTCTTTTTTTTAGACAGTCTCGCTCTGTTGCCCGGGCTATAGTGGCACGATCTCGGCTCACTGCAATCTCCCCCCTCCGGGTTCATGGTA;SVTYPE=TRA;CHR2=1;END=155855386;SVLEN=0 GT ./. E4307002 contig1 size162 2 cov1.86 88 3 31.6666666666667 2 47.5 23 0 0 0 0 162 10 26.9 5 53.8 43 3 20 1 60 9 0 3 0
12 33135502 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGCGAAAGAGAGAGAGAAAAACAGGCAGGACAGGAGGGAGAGAGAGAGAAAGAGAGAGAAAGAAAGGACAGAAGGAGCGAGAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAATCCCACCACGAGGACCCGGAAATAGTGTGTGATCTGTGTCCCGGCCTAGTCCCCTGTCTGGTGTGTCGCTGACTGAGGATTCCACAAATGAAGGGCAGCGGGGTCGCTT;SVTYPE=TRA;CHR2=5;END=63979148;SVLEN=0 GT ./. E3942439 contig13 size285 2 cov1.06 117 8 0.625 0 0 33 2 0 0 0 71 1 53 1 53 37 0 0 0 0 4 0 3 0
12 38387284 N . <DEL> 14 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGATGTGTGAATTCATCTCACAGGGTTAAATCTTTCCTTTGATTCAGCAGGTTGGAAACACTCTTTTCGTAGAACCTGTGAAAGGACGTTGGGTAGCCCATTGAAGCCTATTAGGCAAAATCGAATACCCCCAGATAAAAACAAGAAGGAATCTATCTTTGAAACTGCTTTGTGATGTGTGGATACATATCACAGAGTTAAACCTTTCTTTTGATTCAGCAGGTTAGAAACATTGTTTTTGTACTATCCGCTAAAGGATGTTTCGGAGCC;SVTYPE=DEL;CHR2=12;END=38398935;SVLEN=-11651 GT ./. E3319722 contig1 size270 2 cov1.12 310 14 16.1428571428571 3 49 120 6 13 1 60 789 35 10.5714285714286 4 45 313 10 9 2 33 4 0 4 0
12 49236229 N . <TRA> 2.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGATGTGGGGAGCGCCTCTGCCCTGCCGCCCCGTCTGGGAAGGAGGTGGGGGAGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGATCGCGTATGCCGTCTT;SVTYPE=TRA;CHR2=7;END=112337475;SVLEN=0 GT ./. E1595249 contig1 size208 2 cov1.45 67 0 0 0 0 28 0 0 0 0 112 1 0 0 0 31 0 0 0 0 5 0 3 0
12 63358705 N . <TRA> 30 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGGCATCCTGGGACTCTATGAATTTAGAAATCCGTCATGCAAGAGGAGTTCAGGTGTAAATTTTGTTACTATAAATCACTTGCTCATCTAACAGGAATTGTTTACATGTAGCTGATGATCTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGACCGGGTTCCCCCCTTTTCCCCCGGGTTGGATGGCATGGGGGGGTCTCCGCCCCCTCGCACCCCCCCCCCCCCGGGTGCCCCCCTTTCCCCCCCCCACCCCCCCC;SVTYPE=TRA;CHR2=X;END=133999127;SVLEN=0 GT ./. E3031114 contig4 size262 2 cov1.15 186 48 52.2708333333333 42 59.0952380952381 60 14 42.8571428571429 10 60 99 1 0 0 0 19 0 0 0 0 5 0 7 0
12 69610356 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTTTTCTTTTTCTTATTATTTTTTTGAGTCAGAGTCTTCCTTTGTCTCCCAGGCTGGAATGCAGTGGCACTATCTTGGCTCACTGCAACCTCTGCCTCCCAAGCTCAAGAAGTCCTCCCACCTCAGCCTCCTGAGAAGCTGGGACTACAGGTGCACCACTGCACCTG;SVTYPE=TRA;CHR2=20;END=50603476;SVLEN=0 GT ./. E1505509 contig4 size169 2 cov1.79 96 1 49 1 49 37 0 0 0 0 139 20 55.95 19 57.7894736842105 30 1 60 1 60 1 0 0 0
12 72666892 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAACTTCCAATACTATGTTGAATAGGAGTGGTGAGAGAGGACATTCTTGTCTTGTGCTGGTTTGCAAAGGGAATCCTTCCAGGTTTGCCCATTCAGTATGATATTGGCTGTGCGTTCTCATTAATAGCTCTTATTATTTTGAGATATGTTCCATCAATACCTAGTTTATTGAATGTTATTAGCATGAAGGGTTGTTGAATTTTATTGAAGGCTTTTCCTGCATCTAATGAGATAATTATGTGGTTTTCATCATTGGTTCTGTTTATGTGATGGATTACATTCATTGATTTGCATATGTTGAACCAGCCTTGCATCCCGGGGATGAAGCCGACTTGATCATGGTGAATAAGATTTTTAATGTGCTGCTGGATTCAGTTTGCCAGTATTTTATTGAGGATTTTCGCATTGATGTTCATCAGGGATATTGGCCTGAAATTTTCTTTTTTTTTTTTAATCTCTGCCAGGTTTTGGTATCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGACCACGTCGGCCCAGCCGCCGTCGGAGGAGGAGCGGGAGCCGTGGGAGCCGTGGACGCAGCTGCGCCTGTCGGGCCACCTGAAGCCGCTGCACTACAATCTGATGCTCACCGCCTTCATGGAGAACTTCACCTTCTCCGGGGAGGTCAACGTGGAGATCGCGGCATCAAATCTGTTGAAATGTATATTATAGCCATATCCTACATATACATGCAATGGTATTTCATGCAGCTACAAAAATAATGGTATTACTGTTTACGTGCTTATATAGAAGAAGTTCTCTGCTTATTTTTTTAACTCTTATTTAAACTTAACTTGTCATACTTTGTTATTAATATACAAAGACAATAAACTTTTAAAACACTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACACATTCAAAAGCTAGCAGAAGACAAGAAATAACTAAAGTCAGAGCAGAACTGAAAGAGACAGAGAATTGAAAAACCCTTCGAAAAATCAATGAATCCAGGAGGTGGTTTTTTTTTTAAAAATTAACAAAATAGATAGACCACTAACCAGACTAATAAAAAGAGAAGAATGAAATAGACACAATAAAAAATGATAAAGGGGAGATCACCACTGAACCCACAGAAATACAAACTACCATCAGTGAATACTATAAACACCTCTATGCAAATAAGCTAGAAAATCTACAAGAAATGGATAAATTCTTAGACACATACACCCTCCAAAGACTAAACCAGGAAGACGTCGAATCCCTGAATAGACCAAAAACAAGTTCTGAAATTGAGGCAGTAACTGATATCCTACCAACCAAAAAAAGCCCAGAACCAGATGGATTCACAGCTAAATTCTACCAGAGGTACAAAGAGGAAGTGGTACCATTCCTTATGAAACTATTCCCAACAATAGAAAAAGAGTGACTCCTCTCTAACTCATTTTATGAGACCAGCATCATCCTGATACCAAAACCTGGCAGAGATTAAAAAAAAAAA;SVTYPE=TRA;CHR2=3;END=25400602;SVLEN=0 GT ./. E3103918 contig1 size1634 168 cov15.53 98 42 50.3809523809524 41 51.0243902439024 24 1 40 1 40 383 48 38.4791666666667 35 48.3714285714286 34 0 0 0 0 94 0 66 0
12 86855012 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGTCTCTTTTAAACAAGTTTTCATATTTTACTTCATTTTGTTCCTGAACTCAACTTGATAATAAAATTATTGGTATAAAAGGTTCTATTTGTAGGGACCCATATGAACTCATACCTTTCTCTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTC;SVTYPE=TRA;CHR2=3;END=174410750;SVLEN=0 GT ./. E2638358 contig2 size239 3 cov1.90 119 10 0.6 0 0 53 0 0 0 0 281 84 50.5952380952381 71 59.5352112676056 51 10 60 10 60 3 0 4 0
12 87964654 N . <TRA> 23.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATATATGCATATGTATATATTTATGTATATATATATACATATATATGTATATATTTATGTATACATGTATATATGTATATATACGTGTATATATGTATATATGCATGTATAAATGTATATATGCATGTATATATGTATACATGCATGTATACATGTATATATGTATATATTTATGTACACATGTATATATGTATA;SVTYPE=TRA;CHR2=13;END=27046978;SVLEN=0 GT ./. E4236208 contig4 size283 2 cov1.07 117 0 0 0 0 46 0 0 0 0 230 0 0 0 0 69 0 0 0 0 24 1 29 1
12 87964682 N . <TRA> 13.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACATGTATATATATATATATGCATTTATAAATGTATATATGCATGTATATATGTATACATGCATGTATAAATGTATACATGCATGTATATATGTATATATGTATATATTTATGTACACATGTATATATGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATA;SVTYPE=TRA;CHR2=13;END=27046707;SVLEN=0 GT ./. E1443837 contig1 size376 3 cov1.20 135 1 0 0 0 53 0 0 0 0 120 1 0 0 0 42 0 0 0 0 24 1 29 1
12 87964795 N . <TRA> 13.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACATGTATATATATATATATGCATTTATAAATGTATATATGCATGTATATATGTATACATGCATGTATAAATGTATACATGCATGTATATATGTATATATGTATATATTTATGTACACATGTATATATGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATA;SVTYPE=TRA;CHR2=13;END=27046707;SVLEN=0 GT ./. E1443837 contig1 size376 3 cov1.20 177 0 0 0 0 41 0 0 0 0 120 1 0 0 0 42 0 0 0 0 24 1 29 1
12 117340491 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCGGGAACCCCAGCCGGGGAAAAAAGAGCAAGCCCCTGTCAAAAAAAAAAAAAAAAAAAGAAATCAGTCTTAGCAGAACCTTGATCTTGGATGTCCAGCCTCCAGAACTGTGAGAAGATAAGTGTTTGCCTTTTTTTTTTTTTTTTTTTGATTGTTGGTCCTTTTCTTTCCCCCCGGCTGGGGGTCAGTCGTGCGAACCC;SVTYPE=TRA;CHR2=7;END=98427057;SVLEN=0 GT ./. E1339943 contig3 size202 2 cov1.50 183 6 22.1666666666667 2 35.5 75 1 20 0 0 124 11 58.1818181818182 11 58.1818181818182 28 1 60 1 60 13 1 0 0
12 117340525 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCGGGAACCCCAGCCGGGGAAAAAAGAGCAAGCCCCTGTCAAAAAAAAAAAAAAAAAAAGAAATCAGTCTTAGCAGAACCTTGATCTTGGATGTCCAGCCTCCAGAACTGTGAGAAGATAAGTGTTTGCCTTTTTTTTTTTTTTTTTTTGATTGTTGGTCCTTTTCTTTCCCCCCGGCTGGGGGTCAGTCGTGCGAACCC;SVTYPE=TRA;CHR2=7;END=98427057;SVLEN=0 GT ./. E1339943 contig3 size202 2 cov1.50 175 0 0 0 0 65 0 0 0 0 124 11 58.1818181818182 11 58.1818181818182 28 1 60 1 60 13 1 0 0
12 120861558 N . <TRA> 36.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCCCTCCTTCCCTCCCTCCCCTTCCCCCTCCCCTTCCCCTTCCCCCTCTCCTTCCCCTTCTTCTTTCCTTCCTTCCCTTCTCTTTCCTTCCTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTGTGATGGAGTCTCATGCTGTCGCCCAGGCTGGAGTGCAATAGCACCATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCTTGCTTCAGTCCCCTGAGTAGCTGGGATTACAGGCA;SVTYPE=TRA;CHR2=8;END=114340988;SVLEN=0 GT ./. E958942 contig1 size280 2 cov1.08 101 3 52.6666666666667 3 52.6666666666667 34 1 40 1 40 126 28 58.5714285714286 28 58.5714285714286 43 9 55.5555555555556 9 55.5555555555556 3 0 4 0
13 20385956 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGTAACCTAAGGGTTTGCCTTATATGGACATGGTCTCATCAGTTGGCTGCCTGTGATTGACTGAAGCTTGGCTGCTTATGATTGGCTGAAACGTGATTATCTGTTACAAAATATATACTCCTAAATTAGGTTTAAATTCCTTTATGGACTAAGTTAGGTCACAGTTCAATATGTAGGAATTTGAAGTATGGAGACAGCAGCAGGCCAGTGGCCTCTTGCTTATTTAATTTAATAAGCCAGGCCAGGCGTGGTGGTACACGCCTGTAAGCCCAGCTACTCAGGAGGCTGAGGCAAGAAAATCGCTTGAACCCAGGAAGCAGAGGTTACAGCGAGCGGAGATCCTGCCACTGCACTCC;SVTYPE=DEL;CHR2=13;END=20386403;SVLEN=-447 GT ./. E971153 contig2 size358 4 cov1.69 131 5 59.4 5 59.4 42 0 0 0 0 89 11 42.2727272727273 7 60 38 1 60 1 60 559 222 541 212
13 24055063 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCCATTATTTCATCAAGTAATCTTTCTGAAACTTTCTCTCACCTCTCGTTTTGGCATTCCATTATGCATATGTTGATATATTTAATAGTGTCCCACAAGTCTCTAATCATTTTTCTGCCTGTTTTTTCTTTCTGTTCCTCAATGACAGTGGTCTGTGATGTCTGAAGCATCCATCTCTACTCTCAGATTACTATAGTGAGGATCAGGGCATCTCCTGATGCCCTGGGAGGTCTTTCTCAAAGCACACTCTAGTTACTCCATTCTTGTTGCATCATGCAGCCTGGTGGCAGGGCTTTCTTGTTTAGGCACAGCAGCTGGTCACTCACCATGAACCAACCTACTCCTCATTAAACTTTTCATCCTGTGTTTTATCCCTGAAAGCCCAA;SVTYPE=DEL;CHR2=13;END=49362058;SVLEN=-25306995 GT ./. E2344910 contig3 size387 6 cov2.34 137 5 57.2 5 57.2 45 0 0 0 0 109 3 60 3 60 39 0 0 0 0 1 0 0 0
13 27046707 N . <TRA> 13.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACATGTATATATATATATATGCATTTATAAATGTATATATGCATGTATATATGTATACATGCATGTATAAATGTATACATGCATGTATATATGTATATATGTATATATTTATGTACACATGTATATATGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATA;SVTYPE=TRA;CHR2=12;END=87964682;SVLEN=0 GT ./. E1443837 contig1 size376 3 cov1.20 120 1 0 0 0 42 0 0 0 0 135 1 0 0 0 53 0 0 0 0 29 1 24 1
13 45957375 N . <TRA> 35.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCATACGAGGTCTGATCGTGACTCGAGTTCAGACGTGTGCTCTTCCGATCTTGGGGGGAGGTACACCCCGCGAGGCGGGGACGGAGAGTCAGCCCCTCTTCCCCCACTGGCTCTTGGGACCCCCATCGCGGATCCTAAGATCCTTAGGACAGATCGGAAGAGCGTCGTGTAGGGACAGAGTGTAGATCTCGGTGGTCGCCGT;SVTYPE=TRA;CHR2=12;END=31273045;SVLEN=0 GT ./. E471367 contig2 size203 2 cov1.49 83 0 0 0 0 41 0 0 0 0 104 2 60 2 60 56 1 40 1 40 5 0 12 1
13 45957408 N . <TRA> 35.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCATACGAGGTCTGATCGTGACTCGAGTTCAGACGTGTGCTCTTCCGATCTTGGGGGGAGGTACACCCCGCGAGGCGGGGACGGAGAGTCAGCCCCTCTTCCCCCACTGGCTCTTGGGACCCCCATCGCGGATCCTAAGATCCTTAGGACAGATCGGAAGAGCGTCGTGTAGGGACAGAGTGTAGATCTCGGTGGTCGCCGT;SVTYPE=TRA;CHR2=12;END=31273045;SVLEN=0 GT ./. E471367 contig2 size203 2 cov1.49 95 2 8 0 0 44 0 0 0 0 104 2 60 2 60 56 1 40 1 40 5 0 12 1
13 70260237 N . <TRA> 3 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACTGGCGTGGGGCGCTAGGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATGTGTGTGTGTATGTATATATGTGTGTGTGTATGTATATATGTGTGTGTGTGTATATATACACACACACACATATATACACACACACACACACATATACACACACACACACATATATACACACACACACACACACACACACACACACACACACACACACACACACACAAGATAGCTAGCGTCTCACGCCAGTCACAATAGCT;SVTYPE=TRA;CHR2=10;END=73519588;SVLEN=0 GT ./. E200129 contig1 size283 2 cov1.07 99 4 38 3 46.6666666666667 28 0 0 0 0 69 1 36 1 36 25 0 0 0 0 6 0 3 0
13 78420515 N . <TRA> 0.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGCCTCTCACTCACTCACTCTCTAAAAATACCCTAACATTTTTGGACTGCGGTTCGGTTCACTCGGTAACTGAAATCACAGAAAGTGAAACTGCAGATAAGGGGAGATTGTTACAGAGTATCAGTTGGGGAAGATGAAAAAATTCTTGAGATCTATAGTAGTGATGGTTGCTCATGTACATTGAGCAGCAAATGTACTTAATGCTACTGAACTGTACGCTTAAAAATGGTTAAAATGGTCATTTTTATGTTATATTTTACAACAATAAAAGACATACTTTT;SVTYPE=TRA;CHR2=10;END=27111884;SVLEN=0 GT ./. E3640208 contig1 size283 3 cov1.60 141 6 1.66666666666667 0 0 45 4 0 0 0 223 7 0 0 0 106 4 0 0 0 4 0 5 0
13 78420555 N . <TRA> 0.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGCCTCTCACTCACTCACTCTCTAAAAATACCCTAACATTTTTGGACTGCGGTTCGGTTCACTCGGTAACTGAAATCACAGAAAGTGAAACTGCAGATAAGGGGAGATTGTTACAGAGTATCAGTTGGGGAAGATGAAAAAATTCTTGAGATCTATAGTAGTGATGGTTGCTCATGTACATTGAGCAGCAAATGTACTTAATGCTACTGAACTGTACGCTTAAAAATGGTTAAAATGGTCATTTTTATGTTATATTTTACAACAATAAAAGACATACTTTT;SVTYPE=TRA;CHR2=10;END=27111884;SVLEN=0 GT ./. E3640208 contig1 size283 3 cov1.60 272 1 0 0 0 97 2 0 0 0 223 7 0 0 0 106 4 0 0 0 4 0 5 0
13 81281913 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGGGCTCTTCCGATCTGAGGCGGGGGCTGAGAGCCAGCTCCTCGGCCCCCCCTGGCTCTTAGGACCCCATCGCAGGAAGGGGATGCACCCCCCGCGAGGCCGGGACTGAGAGGATGCGCCTCTTCCCCCCCTGTGTCTTGGGACCCCCATCGCAGGGGGGGGAGGCACTCCCCGCGAGGCGGGGACTGAGAGACAGCCCCTCTTCCTCCTCGGCCCCTCAGGACCCCCACCGCAGGGGGGGGGGGCACCCCCGCGGGGCGGGGGCGGGG;SVTYPE=TRA;CHR2=12;END=9558535;SVLEN=0 GT ./. E3329494 contig2 size271 2 cov1.11 107 5 48 4 60 41 1 60 1 60 116 9 1 0 0 36 7 5.71428571428571 1 30 18 1 24 1
13 82000293 N . <TRA> 44 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATAATGCAGATCAATTCTTTACATTTTCCCATAAAGTATTTATCAACTCCATCTTCCTTTGTGGAGTGTCTCTATTTCTGTTCTGCTTTTTCAATTTTGACTCATTGTTTTTTTCTGATTTTTTGTGTTTTTTTTTTTTTTTTTTCTTTTTCATTCTTTGTCCCCATTTCTTCTTCCTCCTTTTTAATTTCATAACCTTTGATG;SVTYPE=TRA;CHR2=18;END=23536649;SVLEN=0 GT ./. E916441 contig2 size206 2 cov1.47 121 13 58.4615384615385 13 58.4615384615385 41 0 0 0 0 111 1 17 0 0 43 0 0 0 0 0 0 1 0
13 100115285 N . <TRA> 41.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGATAAATGGGTAGCTGGGTGGATGGGTGGGTGGGGTGGGTGGATGATGCATGGATGAATGGATGGATGGATAGATGAATGGATGAATGGATGGATGGATACATGGGTGGATGGATAAATGGATGGACGAATGGAGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACAGGTGGATGGATGGATGGATGGATGGATGGGTGGATGGGTGGGTGGATGGATGGGTGGATGGATGGATGGATGGATGGAGGGAGGGATAGGGGGATGGGTGGGTGGAGG;SVTYPE=TRA;CHR2=7;END=127253027;SVLEN=0 GT ./. E3953535 contig1 size286 2 cov1.06 149 6 8.16666666666667 0 0 64 1 14 0 0 290 0 0 0 0 28 0 0 0 0 23 2 3 0
14 20974785 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGACGTGTGCTCTCCGGACGCCGGCCCGCCCCGGGGGGGAGGGGGGGGGTTCTGTCAAGCAGAAGACGGCCTACGCGATCTGGTCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAAGATCGGAAGAGCGTCGTGGAGGGGAAGAGTGTAGATCTCGGTGGTCGCCGTATCAGTAAAAAAAGCGGCCCCGTCCGGGAGGGAGGGGGGGGGGTCAAGATCGGAAGAGCGTCGGGGA;SVTYPE=TRA;CHR2=15;END=69256821;SVLEN=0 GT ./. E1453865 contig1 size270 2 cov1.12 53 0 0 0 0 22 0 0 0 0 285 7 5.71428571428571 0 0 118 2 9 0 0 3 0 4 0
14 21480704 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAACATGGTAAAACCCTCTCTCTACAAACATACAAACATTAACCAGTTGTGGTGATGTACACCTGTATTCCCAGCTACTAGGGAGGCTGAGGTGAGAGGATTGTTTGAGCCTGGGAGGCCAAGATTGCAGTGAGCTGAAATCACACCACTGCGTTTCCATGTGGGCAACAAAGTGAGACCCTGACTCAAAAAATAAAAACACATTAACCTGAAAGTCCCCTTTATTCCCTTCTCTTCAAACTCACCTTTT;SVTYPE=INV;CHR2=14;END=50712941;SVLEN=29232238 GT ./. E2951981 contig5 size250 2 cov1.21 159 1 0 0 0 54 0 0 0 0 116 14 2.35714285714286 0 0 49 4 0 0 0 3 0 3 0
14 33214739 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCTCTTTCTGTTTCTCTCTCTCCGTCTCTGTCTTTCTCTGACTGTCTCTCTCTTTCCTTCTCTCTGTCTCTCTCTGCCTGTCTCTCTCCCTCTGTCTTCTTTCTTTCTCTCTCTCTCTTCCTTTCTGTCTCTCTCTCTCTCTCTCTCTGTCTGTCTCTCTCACTGTGTGTGTCTCTCTTCTGTCTTCCTCTCCTTCTCTGCCTGTCCGTCTTTCTTTCTGTCTCCCCCTCCCTCTCCCTTCCTTTTTGTTTTTCTCTCTCCCTCTCTCCCTTTCTTTCTCTTTT;SVTYPE=TRA;CHR2=21;END=47404822;SVLEN=0 GT ./. E2631043 contig1 size285 2 cov1.06 984 19 3.21052631578947 1 36 323 2 0 0 0 654 30 1.5 0 0 208 12 5.41666666666667 0 0 5 0 7 0
14 65712014 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCAGCACACGCCACCGTGCCCAGCTAATTTATGTTTTGTTTTGTATAGACAGGGTCTTGTTATATTGCCCAGGCGTCTCGAACTCCCGGACTCAAGCGATCCGCCCGCCTTGGCCTCCCAAGTAGCAGGGATTACAGGCACCGGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATAGGGCTTCACCATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCGG;SVTYPE=TRA;CHR2=16;END=3068815;SVLEN=0 GT ./. E2788548 contig1 size262 2 cov1.15 102 1 51 1 51 32 0 0 0 0 110 1 3 0 0 32 0 0 0 0 4 0 3 0
14 70198809 N . <TRA> 37.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGGGCGAACGGCTGGATGGATGGAGGGATGGATGGATGGGTGGATGGGAGGAAGGATGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAGAGATGGATGGATGGATGGATGGACAGAAGGATGGATGGGTGGGGAGATGGATGGATGGATGGATGGATGGATGGATGGATAGAGAGAAGGATGGATGGTTGGGACAATGGATGGATGGATGGAGGGATCGATAGATGGATGGATGGATGGACAGTCGGAAGGATGGGTGGGGAGGCGG;SVTYPE=TRA;CHR2=20;END=62123799;SVLEN=0 GT ./. E5024 contig1 size285 2 cov1.06 208 3 1.33333333333333 0 0 75 0 0 0 0 269 14 33.3571428571429 8 50.125 77 6 21.6666666666667 1 60 9 0 21 1
14 89791698 N . <INV> 7 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCAACCCCAACAACACCATAACCACCCCAAACACCACCATCACCCCCAACACCACCACCACGACCACCACCAACACCACCACCACTACCCCCCCCACCACCATCATCACTCCCAACAACACCATCACTACCTCCACCACCACCACCATCATCGCTCCCAACAACACCATCACTACCTCCCCCATCACCATCATCAATCCCAACAACACCATCACTACCTCCACCATCATCACCATCATCACTCCCAACAACACCATCATTACCTCCACCACCACCACCATCACCCCCCCCAACACCACCACCACCTCCCCCACCACCACCATCATCACTCCCAACAACACCACCCCGGACCCCCGCAGCACCAGCAACGCGAGCACCACCCG;SVTYPE=INV;CHR2=14;END=100394454;SVLEN=10602757 GT ./. E623376 contig2 size382 3 cov1.19 288 3 58.6666666666667 3 58.6666666666667 107 1 12 0 0 1779 6 2.66666666666667 0 0 1113 5 16.4 2 38 3 0 4 0
14 104435133 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAAGTAGCTTGGCCGGGGGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCAGGTCAGGAGATTGAGACCATCTTGGCTAACACGATGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCCGGAGAATGGCGT;SVTYPE=TRA;CHR2=2;END=215469212;SVLEN=0 GT ./. E391799 contig1 size243 2 cov1.24 48 50 46.34 43 51.7441860465116 13 17 45.5294117647059 15 50.6 103 1 0 0 0 41 0 0 0 0 7 0 5 0
14 106056502 N . <DUP> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGCTTAGTCCAGCTCAGCCCAGGTCAACCCAGCCCAGGCCAGCTCAGTACAGCTCAGCCCAGCCCAGGCCAGCTTAGTACAGCTCAGCCCAGCCCAGCTCAGCCTGGCCCAGCCCAGCTCAGTACAGCTCAGCTCAGCTCAGCCCAGCCCAGCCCAGCCCAGCCCAGCGCACCGCAGCGCAGCGCAGCCGAGCCCAGTCCAGCTCAGGCCAGCCCAGCCCAGCCCAGGCCAGCCCAGCCCAGAGCGCGGCAGAGCGGCGCGGAGGAACAGAGCGCAGATC;SVTYPE=DUP;CHR2=14;END=106176078;SVLEN=119576 GT ./. E2988318 contig4 size281 2 cov1.07 101 4 34 2 50 30 0 0 0 0 104 4 36.5 2 59 60 0 0 0 0 13 1 10 0
15 20310356 N . <INV> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCCCCGAACCCCGCCACCCCACCAAGCCGCCGCAGCCCCCAACCCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGGCACCCACACCACCCAGCCAGCCAAGCCAGCAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCCACCCAACCCTCCCAGCCAAAGCCCCCACGCGATCCACGCAAGCCCAGCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGCCAGCCGAGCCAGTCAAGCTAGCCAGCCACCCAAGCCAGCCCAGCCAGTCAAGCTAGCCAGCCACCCAGCCAGCCAAGCCAGTAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCCGCCAAGCCAGCCACCCAG;SVTYPE=INV;CHR2=15;END=20546261;SVLEN=235906 GT ./. E132848 contig2 size413 3 cov1.10 518 0 0 0 0 185 2 6.5 0 0 1401 50 29.12 26 49.3846153846154 385 13 38.7692307692308 10 49.1 7 0 6 0
15 20310484 N . <INV> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCCCCGAACCCCGCCACCCCACCAAGCCGCCGCAGCCCCCAACCCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGGCACCCACACCACCCAGCCAGCCAAGCCAGCAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCCACCCAACCCTCCCAGCCAAAGCCCCCACGCGATCCACGCAAGCCCAGCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGCCAGCCGAGCCAGTCAAGCTAGCCAGCCACCCAAGCCAGCCCAGCCAGTCAAGCTAGCCAGCCACCCAGCCAGCCAAGCCAGTAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCCGCCAAGCCAGCCACCCAG;SVTYPE=INV;CHR2=15;END=20546261;SVLEN=235778 GT ./. E132848 contig2 size413 3 cov1.10 364 4 18.5 1 45 129 1 59 1 59 1401 50 29.12 26 49.3846153846154 385 13 38.7692307692308 10 49.1 9 0 6 0
15 20311029 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCTGGGGTGGCGTGGCTGGCTGGCTGGCTTGGCTGGATGGGTGGCTTGGCTGGGTTGGCGGGCTGGCTGGCTTGGCTGGCTTGGCTGGCTTGGATGGCTGGCTGGCTTGGCTTGCTTGGCTGTCTGGGTGGCTTGGCTGGCTGGCTGGCTGGCTTGGCTGGCTGGGTGGCTTGGTTGGCTTGGGTGGCTGGCCGTGTTTGCTGGCGGGGGGGGTTGGCTGGCGTTGCGGACTGGGCAGCGGGCAGGCGCCGGTGTGTGAGTGTGTGGGCTGGTCGCGGAGAGTG;SVTYPE=DEL;CHR2=15;END=21314038;SVLEN=-1003009 GT ./. E434717 contig2 size285 2 cov1.06 222 12 22.5833333333333 6 39.3333333333333 101 2 18 0 0 375 5 0 0 0 134 3 0 0 0 10 0 8 0
15 20942026 N . <TRA> 35 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACTAGAGATCAATTCAAAGGACTGGCTTTAGCCTCCAGCTACTGAACAGCTTTGGTTAATAAGAAGCACCTGCAGAAGACTAGAAGACAACAGGAAAGGGGTTGTCTAGTGTTTTTTTCTCTGTGTTGTCTTTTTTTTTTTTTCTTTTTAGAATTCCGTGTAAACAAAATCACGCAGTATTTAGCCTTTTTGTTTTAATTTTTGTTTGTTTAATAGAAATGGG;SVTYPE=TRA;CHR2=6;END=65298377;SVLEN=0 GT ./. E4105744 contig5 size224 7 cov4.72 277 0 0 0 0 82 0 0 0 0 151 28 43.9642857142857 20 60 45 0 0 0 0 51 0 56 0
15 21356394 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTGAACCTGCACTGGCCTGACCTTGGCTCTGGCCCTGCTCTGCCTTGTTCCTGGCCCTGACCCAGACCCAGACCCTTTCCTGGCTCTGCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAA;SVTYPE=TRA;CHR2=2;END=90288288;SVLEN=0 GT ./. E1984676 contig1 size214 2 cov1.41 44 0 0 0 0 6 0 0 0 0 114 0 0 0 0 44 0 0 0 0 7 0 4 0
15 22827082 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGACCCCCCCCCCCTCTGGCCACGTGACGCTTACGCAGTCCCCCCCAGCTCCTCATGACACGGCGGGCTCCGAGGTCTACACTCTCCCCCAGCACCTCGCGCCAGGGGGGGTTATGATGGCCCCACAGCACCTCTGGCCAGGTGGGATTATGACTCCCCCAGCACCTCTGGCCAGCTGGGGTTATGATACCCCCCCACAGCCCCTCTCCCGCTGGGAGGATATGTTGTCCCCCCACCCCCCCGGGCCCGGGGCGGCTATGGG;SVTYPE=DEL;CHR2=15;END=22832636;SVLEN=-5554 GT ./. E2696055 contig1 size262 2 cov1.15 190 2 30 1 60 46 1 46 1 46 168 17 44.3529411764706 13 52 57 1 38 1 38 6 0 5 0
15 23685607 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATATGCATTTGTTTGGACGCGGGACGGAAGCACTGGTTTGGTGGAATGAGGAGGGGGCATTCAGCCCCTAAAGTGGACCTTGGAGTAGGGGACCCTGAGAGTGGAGCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCTGCATCTTCTCTTCCTGCTCCTGCATCTTCTCCTCCTGCTCCCGCATCATCTCCTCCTCCTCCCGCATCTTCTTCTCCCGCTCCCGCATCCTCTCCTCCTCTCGCATCTTCTCCTCCTGGTCCCATGTCTTCTTCTCCTGCTCCTGCGTCTTCTTCTCCTCCCGCATCTTCTCCACCTGCTGCCACATCTTCTTCTGCTCCCGCATTCTCTCCTCCTTCTCCCGCAGCCTCTCGTCCTGCTCCCACATCCTCTCCTCCTGGTCCCACATCTTCTGCTCCTGATCCCGCATCTTCTCCTCCTGCTCCCACATCTGCTTCTCCTGCTCCTGCAGCCTCTCCTCCTGTCTCCACATCTTCCTGCTCCCGCATCTTCTCCTGCCGCCACATCTTCTTCTCCTGCCC;SVTYPE=TRA;CHR2=20;END=37274467;SVLEN=0 GT ./. E2267574 contig3 size542 14 cov3.90 214 22 23.7272727272727 10 38.9 65 0 0 0 0 134 19 39.1578947368421 13 49.6153846153846 41 0 0 0 0 23 0 57 0
15 23706879 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGGAGGAGGAGGGGAAGATGCAGGAGGAGGAAGAGAAGATGCAGGAGCAGGAGGAGAAGATGTGGGAGCAGGAAGCTCCACTCTCAGGGTCCCCTACTCCAAGGTCCACTTTAGGGGCTGAATGCCCCCTCCTCATTCCACCAAACCAGTGCTTCCGTCCCGTGTCCAAACAAATGCATATTTCCAAGCCCTGTGGGACGCTGGGCCAGGGAAGAGGCCACGATGACCCTGGAGAGGGCTCTGCCTCTCGCCCCCAGAAGTCCTATCCCCCTGCCACTAGTTCAATATGAATCTGTACCAACTAAAAGCAATATTTTAGTCAATATTTCCTGAGGTGAATTGATTTATATTGTTTTCTTCTATTAAAAAAAAAACACATTCCCATGTGTTTCCTTTTCCTTCATGGTTTTGAAAATATGGAATCAAGTTTTCTTTTTTTTTCTTTTTTTTTGAGACGGAGTCTCACTCT;SVTYPE=TRA;CHR2=20;END=37274668;SVLEN=0 GT ./. E2267574 contig1 size471 19 cov6.09 174 35 52.6857142857143 30 58.9333333333333 49 0 0 0 0 165 25 56.44 24 58.2083333333333 43 0 0 0 0 22 1 57 0
15 23717166 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTCCATGTTGGTAAGGCTGGTCTCAATATCCTGACCTCAGGTTATCCGCTCTCTTCGGCCTCCCGGGGTGCTGGGATCGCAGGCGTGAGCCACCGCGCTCAGGCCAATTTATTAATCAGACAGGAATAGGTCGGCCTGGTGTTTTACATACATCAGTTAGCTCAAGTTCACTGATGATGTTGGTCAAACTTTCCAAGGCTTGCTGAGTTTTAGAAATTATTCAATCATTTGCTTACAGGGACACCTAGTGGTTCAAAATACTACTAAGTTAACCCAAGTTATTACACACTGGATATTCAATGAAGATCAATTAGTTTGGTTATTGGTGAATGATTTTTCTCCCTTTTGAAAAATAATAGCCACAAATATTTTGATGAGGAAAGGGGACAGAAAATGCACTAGGACATATTTTACAAGTATTTTAACCTCTTATTTTAACAAAAATCTCCCAGGAGGCACAATATGGATTAATTCTGTTGATTCTTACTCTGTGGCCTTTCCAGTGCAAGATTGCGCCACTACACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAGAAAAAAAGAATGAACAATTAAAGTTACTTAATAATATGGATGTGGAAGTCACCTGTTGGCCAGATAATATACCAGAGAAGTATATTATCAGACCTCTTTCTCAAACATCTTTGTCACCAATTTTTCAACAATTTTCCTTCCAAGTCCCTGAATATCCTGCCAAACCATTGGCAGCAGCCCATGAATCAGTATATAATTGCATGTCTGGCCATTTTTCCTTCCAAGAAAGTGCACAACTAGGTGCACTGTCTAAAGGTCTGCTGACTAGGCAGATTTCTCTTCACCATTGTCCTCCAGAGATGTCCCAAACAGAGGCTGTAGTGTTGCAAATGCCCACCATTGTGTAGTGCCTGCATAGTATGCAAAACCATCTGTAGACAGATCCTAGCTTTTAATTTCTCTGTTGACTGGTCATAGGAAGTTCCCTTAAGACCATGCATTCAGTGGGGAAAGAGAAGGCCGTTTAGTAGGAGTGGAGACCATGGCATTTTGACCACTTTTTCATTTAACTTATTTGTGCCTTGGGGCCTGTTCTGGCTCAATCATATATAAACCCCTTGCATTTCATAATGTTGCTGCTGTCTACCTGAAATTTCTGGCCAGGTGGGTCAGATGACACATAGTTCACCATGGGTAGCTGAGGTTGCATGGTAAGTGTTCTGCTAACACCCAACTGCAGACCAATAACTGTTTCTCAAAAAAAGAACAGTTATCTGAGGAGAATGATAGAACTTT;SVTYPE=TRA;CHR2=6;END=138774059;SVLEN=0 GT ./. E2801615 contig1 size1304 75 cov8.68 200 27 59.1111111111111 27 59.1111111111111 44 0 0 0 0 126 16 58.625 16 58.625 42 0 0 0 0 11 0 47 0
15 23831661 N . <INV> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATTTACATTCCCACCAACTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCCGCTCACTGCAAGCTCCGCCTCCCGGATTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAGTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCATTCCCACCAACTTTATAGGAAGATTCTCTTTTCCCCACATCCTTGCCAGTATTCATTATCGCCTGTCTATTTGAACACAAAGCCATTTTACCTGGGGTAAGATGATATTTCATTGTGATTTTGCTTTGCATTTCTTTCATGATTAGTGATGATGAACATTTTTAAATAACTGTTGCCACGAGAGTACACAGAGCAAAGGAGACAGGGTCATTTATACCCTGATGCGTCCACCCCACTGCTGTGTCCGGTTTCCATTGGCTGGAACAGGACCTCACATTCCATGTTTGTCCTGATTGGCTGGCAACTTAGAACTTTT;SVTYPE=INV;CHR2=15;END=23992703;SVLEN=161041 GT ./. E460578 contig2 size636 45 cov10.68 258 51 29.3921568627451 20 45.6 46 0 0 0 0 141 49 45.3469387755102 36 52.9722222222222 38 0 0 0 0 66 0 73 0
15 36813690 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACAAAGAGAGAGAAAGAAAGAGAGAAAAAAAGAGGAACGGAGGGAAAGAGAGAAAGAAAGAGAGAGAGAGACAGACACACAGACAGGCAGGCAGGCAAGGAAACAGAGTAAGACAGAAGATAGGAACAGAGAGAGAGAGAGAGAGACAGAGAGACGCAGAAAAAGAAAGAGAGAGGCAGACAGACAGAGAAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGAGAGAGAGAGAGAGAGACATGGAGGGAGAGAGACAGACAGACAGACAGAGAGGCAGGCAGAGAAAGAGAGTAAGACAGAAGACCGACACAGTGAGAGAGAAAGGCAGAGAGAGAGAGAGAGAGAGAGAGACACAGAGAGAGAGAGAGACAGATAGAAACAAACAGAAAGAGAGAGAGAGACAGAGAAAGAGAGAGAAACAGAGAGACACAGAGAGAGAGAGAGAGAGAGACGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGGGG;SVTYPE=TRA;CHR2=8;END=14088735;SVLEN=0 GT ./. E3124325 contig1 size509 4 cov1.19 80 0 0 0 0 48 1 0 0 0 365 1 0 0 0 136 1 0 0 0 3 0 9 0
15 41621292 N . <DUP> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACTAAATATACTATATTTATACCGGTATAATATACTAAATATGCTATATTTATACCGGTATAAATATACTAATATACTATATTATACTGGTATAAATATACTAAATATACTATATTATACCAGTATAAATATAAATATACTAAATATACTATATTTTTATGTATACTAGTATATTTGTACTAGTAAAATTTATTTAAATTGTAATGTTTTATTTTAATCAAATCTTGATAATTTTACTAGTATGATATTATTAAAAATAAATTTATGGCCGGGCATGGTGGCTTGCACCTGTAATCCCAGCATTTGGGAGGCCAAGGCAGGTGTCTCACCTGAGGTCAGGAGTTTGAGACCAGACTGGCCAGCATGGCAAAACCCCATCTATACTAAAAATACAAAATTTAGCCAGGCGTGGCAGGGGGCACCTGTAATCCCAGCTACTCGGCAGGCTGAGGCAGGAGAGGAGAATTGATAGAACCCAGGGAGGCAGACGCTGCAGTGAGCCAAGATCACACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTAAAAATAATAATAATAATAATAATAATAATAAATATATAGGAGATAAAAAGAACCCGAGTCTGCTGTCTCTAAAATTTATGCTCTTTTAGCTGCATCATTAATCCTCCTCTTAATTCATTCTCTT;SVTYPE=DUP;CHR2=15;END=41628510;SVLEN=7218 GT ./. E845956 contig2 size681 31 cov6.87 79 64 58.484375 64 58.484375 34 0 0 0 0 113 48 45.5208333333333 39 52.8461538461538 55 0 0 0 0 30 0 32 0
15 53807277 N . <TRA> 31.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAAACTCAACAGCAAGTCAAAGAATCAAGGCTTGCAAATGAAAATATGATATTCCTTTGGGGGATATGCCATATATATATATATATACACACATATATATGTGTATATATATGTTTGTATATATATACACACATATATATGTGTATATATATATACATATATATGTGTGTATATATATACACACATATATGTTTGTATATATATACACACATATATATGTGTATTTATATCCATGTATACGGATAACAATGTATATATATACACTAACATACTCACACATATAA;SVTYPE=TRA;CHR2=10;END=56539174;SVLEN=0 GT ./. E223801 contig1 size285 2 cov1.06 126 21 39.6666666666667 12 55.6666666666667 35 1 60 1 60 49 0 0 0 0 16 0 0 0 0 0 0 0 0
15 69256821 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGACGTGTGCTCTCCGGACGCCGGCCCGCCCCGGGGGGGAGGGGGGGGGTTCTGTCAAGCAGAAGACGGCCTACGCGATCTGGTCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAAGATCGGAAGAGCGTCGTGGAGGGGAAGAGTGTAGATCTCGGTGGTCGCCGTATCAGTAAAAAAAGCGGCCCCGTCCGGGAGGGAGGGGGGGGGGTCAAGATCGGAAGAGCGTCGGGGA;SVTYPE=TRA;CHR2=14;END=20974753;SVLEN=0 GT ./. E1453865 contig1 size270 2 cov1.12 285 7 5.71428571428571 0 0 118 2 9 0 0 63 0 0 0 0 31 4 11 1 40 4 0 3 0
15 71491784 N . <TRA> 8 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACACACACAACAAACAGAGCAACCACCCACAACACACACACACCACACACACACCCCCCCCATACACCACACACACACCACACACACACCACATCACACACACATACACCACACAGACCCACATACATACCACACACATACACACCACACGCACACAACACACACACACCACACACACACCCCCCCCCAAACACACCACCCACACCACACCCACACCACACACACAACCCAACACACCACACACACACACCCCACACACAACACCCGCAGACCACACCC;SVTYPE=TRA;CHR2=22;END=48205682;SVLEN=0 GT ./. E351007 contig1 size281 2 cov1.07 159 2 22.5 1 43 70 0 0 0 0 265 4 54.25 4 54.25 87 2 55 2 55 13 1 15 1
15 72501803 N . <TRA> 30.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGAAACATACAGTAAAACCTACTTTGTGTGAGGGAAGCTAATACAGGCAAACGATATATATGTGTGTGTGTGTGTGTATACACATATATGTATATATACACATATGTGTATATATACATATATGTATATATACATATATATATATATATACATATATATATATATATATAAGATCGGAAGAGCATCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGAAGCTGAGGCAGGAGAATCGCATGAACCCGGCAGCCAGAGGTTGCGGTTA;SVTYPE=TRA;CHR2=9;END=129993330;SVLEN=0 GT ./. E4425419 contig1 size286 2 cov1.06 31 0 0 0 0 25 0 0 0 0 65 13 53.1538461538462 12 57.3333333333333 25 1 40 1 40 2 0 0 0
15 78135274 N . <TRA> 9.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCAGTTACTTGGGAGGCCGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTACAGTGAGCCAATAGCGTGCCATTGCACTCCAGACTGGGCAACAAGAGTGACACTAAGTCTAAAAAATAAAATTAAAATTAAAAAAGAAAGTTATAAGGGGCTTACATTTTATAACTCAACAAGAAAAGCCAAAGTATCTATCCCTTTCAGAAAATAAACATGTAATTTAATTATGTTCATAACAAATCATTTAGTAAACAATC;SVTYPE=TRA;CHR2=4;END=32493334;SVLEN=0 GT ./. E3251266 contig1 size261 2 cov1.16 459 110 0.245454545454545 0 0 157 27 0.407407407407407 0 0 118 31 0 0 0 59 8 0 0 0 25 1 7 0
15 84810725 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGCCAGCCTCGGACATCCGCGTGTTCGCCAGCAACTGCTCGATGCACGGGCTGGGCCACGTCTTCGGGCCAGGCAGCCTGAGCCTGCGCCGGGGGATGTGGGCAGCGGCCGTGGTCCTGTCAGTGGCCACCTTCCTCTACCAGGTGGCTGAGAGGGTGCGCTACTACAGGGAGTTCCACCACCAGACTGCCCTGGATGAGCGAGAAAGCCACCGGCTCATCTTCCCGGCTGTCACCCTGTGCAACATCAACCCACTGCGCCGCTCGCGCCTAACGCCCAACGACCTGCACTGGGCTGGGTCTGCGCTGCTGGGCCTGGATCCCGCAGAGCACGCCGCCTTCCTGCGCGCCCTGGGCCGGCCCCCTGCACCGCCCGGCTTCATGCCCAGTCCCACCTTTGACATGGCGCAACTCTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGGACTGTCGCTTCCGTGGCCAACCTTGTGGGCCTGAGAACTTCACCACGGTGAGCTGACCTCCCTACCTATCCTGCCAGGGACCCAGAGAGCCGACCAGTCCCTGCCCAGCACCCACAATTCCCTAGCCAGCACAGGCTCCCCCAAAGCCAGGGGACCTCTTCCTTCCTACCAGCCATGGACTCCCCACCCCCCAGTGCCGATAAGACCTTTTCCTGCATTGACATAGCCTCTCCCTAATTGTACCTGTTTTTGGAGTTGGGATTTGGAGGTGGAGGGATGTGAGAGAGGGAGGAAGGAATATAAGGTGTCTTTTATAAGCCTTCCTTTCTCAGGATCCAAAGTTTTTTAAAAAGAAAAGAAAACAGGTTTTTTTTAAAATATGCAGTGAACTATTTTTTTCCTCTGAAAAATGAAACCTTTATTGGCTTAATTTTGTACCCTAATCATTTACTCCCATTTATTTTGTGCTTACTGTTTGGTTCTATATTGATCACTAGGTTAGGTTTCTCATACTGGGTGCTTAGTCTTCCAAATTATTTATAGGTGCTTCACAGTTGATCGCAAACTAGTAAATAAGGCATCCTCTGGTAGGAGAAGCAGCACTGGATTTTACCAGTGGGAGCTCTGGCAAGTTGGCCACTTTGTGGGAATTTCCAGACCTGAATCTGCATCTGTGTAGAAGGAAGTTGAGGTAGATGAATCTCTATGGCCTTCCTTTCTCTCCTAGTTGGTTTTCCAAGATCCTTCCTCACCTTTTCCACTGCCCATGTCTTGGGTTTTCCTGTATTTCTTAGTTACGTTGCTGTTTTCAGTACCCTCTGTGCCCTCTTCTCTATCTGTGGATTGCTT;SVTYPE=TRA;CHR2=7;END=150746657;SVLEN=0 GT ./. E1736138 contig1 size1304 89 cov10.31 72 61 42.1639344262295 46 51.1739130434783 38 0 0 0 0 122 59 54.8474576271186 57 55.9122807017544 39 0 0 0 0 108 0 116 0
15 90312008 N . <TRA> 32.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCACCAGCCTCCCTAAGCTGGGATTTGTCCCCATCCCTCATGAACAGTGGCCTCCAGTTCTCACCACTTACTTTAGGTAGGGCCCATCCTGTCTGGAGAATAAGGAACCATCACCATCACTCCTCAGTTGAAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTCTTGTGCCCCCCCTGGGGTGGTGGGTGGGCGGTCGCC;SVTYPE=TRA;CHR2=6;END=7473810;SVLEN=0 GT ./. E957186 contig1 size244 4 cov2.48 142 47 58.2765957446809 45 59.6666666666667 31 14 50.7857142857143 12 56.75 132 0 0 0 0 47 0 0 0 0 5 0 4 0
15 94595141 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACATATACATACACACCATACACACACATATATACACACTACACACACACCACACACACATACACATATACATACACATCACACATATATACACACTACACACACACACCACACCACACATACATACACATATACATACACACCACACACACATACACATACACACCACACACAAACATACACACCACACACACATACACATACACACCACACACATACATACACACCACACACACACACACACACACA;SVTYPE=TRA;CHR2=19;END=11575904;SVLEN=0 GT ./. E2036269 contig1 size252 2 cov1.20 328 9 0.666666666666667 0 0 96 1 0 0 0 262 1 60 1 60 113 0 0 0 0 9 0 11 0
15 94595182 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACATATACATACACACCATACACACACATATATACACACTACACACACACCACACACACATACACATATACATACACATCACACATATATACACACTACACACACACACCACACCACACATACATACACATATACATACACACCACACACACATACACATACACACCACACACAAACATACACACCACACACACATACACATACACACCACACACATACATACACACCACACACACACACACACACACA;SVTYPE=TRA;CHR2=19;END=11575904;SVLEN=0 GT ./. E2036269 contig1 size252 2 cov1.20 394 13 32 7 57 117 2 60 2 60 262 1 60 1 60 113 0 0 0 0 9 0 11 0
16 4635313 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCAGGTTTGATGGCTCTTGTAATCCCAGCACTTTGGGAGGCTGATGGGGGAGGATCCTTTGAGCCTAGGAGTTCCAGATCAGCCTGAGGCAACATAGTGAGACCCCTGTCTCTACAAAAAAAAAAAAAAAAAAAAAAATCCAGGGAGGGGGCCAAAGACAAACACTGGCAACCCATAATTCTGTATCCTGAAATATATTAGGAAAAAAAGACAAAAAAAATTTTTAAATAAATTGTTCAAAGTGTATAAAGCTGCAGAAATAAAGAA;SVTYPE=TRA;CHR2=7;END=125021731;SVLEN=0 GT ./. E2005168 contig1 size267 2 cov1.13 127 18 56.6666666666667 18 56.6666666666667 41 1 60 1 60 109 1 60 1 60 47 1 60 1 60 1 1 0 0
16 7733013 N . <TRA> 32 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=11;END=97542045;SVLEN=0 GT ./. E1515434 contig2 size292 3 cov1.55 52 11 42.2727272727273 8 56.75 19 4 46.5 3 60 43 1 0 0 0 28 1 60 1 60 4 0 5 0
16 7733110 N . <TRA> 23 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=11;END=97542045;SVLEN=0 GT ./. E1515434 contig2 size292 3 cov1.55 59 0 0 0 0 22 0 0 0 0 43 1 0 0 0 28 1 60 1 60 4 0 5 0
16 15488839 N . <INV> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGAGTGCAGTGGGGCGATCTTGGCTCACTTCAAGCTCCACCTCCTGGGTTCAGGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCAGTAGCTGAGACTATCAGTGCGCACCACCAAGCCTGAGTAATTACAATACTTTTTTCTTTTTCCTTTT;SVTYPE=INV;CHR2=16;END=28636073;SVLEN=13147235 GT ./. E3180573 contig1 size154 2 cov1.96 116 2 30 1 60 31 0 0 0 0 104 3 0 0 0 50 1 0 0 0 4 0 3 0
16 19444258 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCACATATAACATCCATCTTTCTATCTATCTATCATCTATCTACCCATCTGTCTATTTATCTGTCTATCTAATCTATGTGTGTTTTTGTATGTGTGTTCTATGAATGTGTATATATAATGTATATTATATGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGTATTTTTCTTTTCTTTTTTTCAGCTTTTTTCCCCACTATTTGAAAGTGACAGAATTGTTTTTTACAATGTGCTTTGTTGTGTCTTTCA;SVTYPE=TRA;CHR2=7;END=42590329;SVLEN=0 GT ./. E2228536 contig1 size254 2 cov1.19 125 17 48.2352941176471 16 49.5625 46 1 60 1 60 196 1 60 1 60 65 0 0 0 0 1 0 0 0
16 20754044 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTTATTGAAAAACAACAGACAATGGCAAAAACAAATTGACCTTTTTGTGTTCCTTTGTGCATGGACGAATGGCTGACTCTGGAGCCCAGGCTGTTGCTTCTCGGTCTGGTGATCAATCTTCCATAGTCTATCTATATATATATATATATATACATATGTATACACATTTTTTTCCTTCTCCCCTTTCCCATTGTAATTTTCTTGTTGTATCAATTGTCTTATTTTATCATCATTTGCTTATTATATCTTCATTTCCATTTATGTGGGTTAGAG;SVTYPE=TRA;CHR2=4;END=190930067;SVLEN=0 GT ./. E2870377 contig1 size274 2 cov1.10 346 32 0 0 0 118 9 0 0 0 356 86 1.30232558139535 0 0 93 24 0.375 0 0 15 1 6 0
16 32295379 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACTTCATCATTTCGTTTCATCATTTCATTTCCTCATTTCATCATTTCATTTCATCCTTTCATTTCATCTCATCATTTCATCCTTTCATTTCATTCTTTCATTTCATTATTTCATCTCATCATTTCATCTCATCATTTCATTTCATCATTTCATCTTTTCATGTCATTTCATCATTTCATCTTTTCATTTCATTCTTTTCATCATTGTATTTCATTATTTCATTTCATTTCATGTTTTCATTTCATCTGTTCTGAAGAGCGTCGTGTAGGGTAAGTGTGTTT;SVTYPE=INV;CHR2=16;END=32657512;SVLEN=362132 GT ./. E3875224 contig2 size283 2 cov1.07 157 2 45.5 2 45.5 53 0 0 0 0 229 1 43 1 43 89 2 24.5 1 40 9 0 9 0
16 32295510 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACTTCATCATTTCGTTTCATCATTTCATTTCCTCATTTCATCATTTCATTTCATCCTTTCATTTCATCTCATCATTTCATCCTTTCATTTCATTCTTTCATTTCATTATTTCATCTCATCATTTCATCTCATCATTTCATTTCATCATTTCATCTTTTCATGTCATTTCATCATTTCATCTTTTCATTTCATTCTTTTCATCATTGTATTTCATTATTTCATTTCATTTCATGTTTTCATTTCATCTGTTCTGAAGAGCGTCGTGTAGGGTAAGTGTGTTT;SVTYPE=INV;CHR2=16;END=32657512;SVLEN=362001 GT ./. E3875224 contig2 size283 2 cov1.07 163 0 0 0 0 51 0 0 0 0 229 1 43 1 43 89 2 24.5 1 40 9 0 8 0
16 32344157 N . <DEL> 3 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCTCATCTTTTTTAATGATACGGCGACCACCGCGATCTACACTCTCTCCCTACACGACGCTCTTCCGATCTTCATCTCATCTCATCATTTCTTCTCATCATTGCATCTCATCATTCATCTCATCATTTCATCTCATCTCATCATTTCATCTCATCATTGCATCTCATCATTCATCTCATCATTTCATCTCATCTCATCATTTCCATTTCCATTGAGTTATTTTCTTAACTCCTTTCATTATCTCATCTCGTTTACCTTCTTCTCCTTTCATTATTTCA;SVTYPE=DEL;CHR2=16;END=33342312;SVLEN=-998155 GT ./. E1008005 contig1 size281 2 cov1.07 240 0 0 0 0 94 1 35 1 35 177 0 0 0 0 68 0 0 0 0 4 0 3 0
16 33873030 N . <INV> 2.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGATTCCCTTCGAGTCCATTTGATGATTCCATTCGATTCCATTCGATAATGATTACATCCGAGTCCATTAGATGATTCCATTTGAGCCCATTCGATCATTCCATTTGAGTCCAACCAATGATTCCATTCATTTCCATTCAATGATTCCATTCGAGTCCATTTGATCATTCCGGTAGGGTCCATTCGATGTTGATTCCATTGGAGTGCATTAGATGATTCCATTCGAGTCCATTCGATGATTCCATTCGATTCCATTCGATGTTGATTCTGTTCAAAT;SVTYPE=INV;CHR2=16;END=46405309;SVLEN=12532278 GT ./. E4252900 contig1 size277 2 cov1.09 4151 156 3.03205128205128 5 34.2 1377 50 3.12 0 0 52136 460 10.1521739130435 35 37.8 28167 219 12.3744292237443 21 38.8571428571429 7 0 6 0
16 33876810 N . <DEL> 3 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCATCATCAAACGTAATTGAAAGGAATCATCATTGAACGGAATGGAATGGAATCATTGTTGAACGGAATCAAATGGAATCATGATCGAAGGGAATCGAATGGAATCATCATCGAACTGAATAGAATTTAAACATCTTTGAACAGAATCGAATGGAATTATCATCGAATGGAATCAAATGGAATCATCATCGAACAGAATCGAATGGAATCATCATCGAATGCATCAAATGGAAACATCATCAAATGGAATCATAATCAAATGGAATCGAATGGAATCATCAT;SVTYPE=DEL;CHR2=16;END=33882669;SVLEN=-5859 GT ./. E1914793 contig1 size283 2 cov1.07 428 1 0 0 0 173 1 60 1 60 323 3 32.6666666666667 1 60 114 0 0 0 0 7 0 3 0
16 33886922 N . <INV> 0.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCATCAATGGAATTGAATGAAATCAAACTCAAATGGATTCCAAAGGAATCATCTTCGAATGGAATCAAATGGAATCATCGAATGCAATGGAATGGAATCATCATTGAAAGTAATCGAAGTGAATCATTGAATGGAATCGAATTGAGTCATCGAATTGAATCGAATGGAATCATCACCGAATGGACTCGAATGGAATCATCATGG;SVTYPE=INV;CHR2=16;END=46438308;SVLEN=12551385 GT ./. E3761671 contig1 size205 2 cov1.47 497 0 0 0 0 157 0 0 0 0 789 32 5.46875 1 60 367 2 3.5 0 0 12 0 7 0
16 33889009 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAATCATCGAATGGAATGCAATGGATTAATCCATGGACTCGAATTCAATCACCATCGAATACAATCGAATGGAGTCATCGAATCGACTCAAGTGGAATAATCATTGAATGGAATCGAATGGAATCATCGAGTGGAATCGAATGGAATCATCATCGAATCGACTTGAATGCAACTATGAGCGAATGGAATTGAATGGAATCATCGAATGGACTCGAATGGAATAATTGAATGGACTCAAATAGAATAATCAAATGGACTCAAATGGAATCATCAAATGGAATTGAA;SVTYPE=INV;CHR2=16;END=46438704;SVLEN=12549694 GT ./. E3829466 contig3 size286 2 cov1.06 508 5 0.2 0 0 168 0 0 0 0 1161 8 34.875 4 60 488 6 45 5 54 6 0 5 0
16 33890183 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTACGTCTTGATGATTCCATTCTATTCCATCCGATGATTCCATTATCTTCTATTTTATGTTGATCCCATTCAATTCCATCTGATGATTCCATTCGATTCCATTTGATGATGATTCCATTCGATTCCATTCAATGATTCCATTCGATTCCATTAGATGATTCCATTCGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAATATTTCCATTGGTTCCCTTTCGATGAGGTTTCCTCTCTATTCCGTTCG;SVTYPE=INV;CHR2=16;END=46452525;SVLEN=12562343 GT ./. E1516540 contig7 size282 2 cov1.07 612 13 5.84615384615385 1 60 232 1 0 0 0 974 42 12.4285714285714 8 46 379 19 17.6315789473684 6 42 3 0 4 0
16 33961440 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGCCTGTCCTGCGCATCTGCACCGTCCGTGCCGTTCCTGGCACAGCAGCGCGCCCCCCCCCCGCCCGCCACCCTGGGCTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCGTGCCGAGTCGTGACCGGTGCCGACGACCGCGTTTGCGTGGCACGGGGTCGGGCCCGCCTGGGACCGAACCCGGCACCGCCTCGTGGGGCGCCGCCGCCGGCCACTGATCGGCCCGGCGTCCGAGATCGGAAGAGCACACGGCTGAACTC;SVTYPE=TRA;CHR2=21;END=9825703;SVLEN=0 GT ./. E3168587 contig1 size304 3 cov1.49 2191 9 27.4444444444444 6 34.5 666 1 38 1 38 7917 9 52.3333333333333 8 56.25 2835 1 60 1 60 1484 433 1446 424
16 33998312 N . <INV> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTGTTTATGTGAAGATATTTGCTTTTCCACTATAGGGTGAAACAGGGCTCCAAGTATCAACTTGCAGATTCTGCAAAAAGGAGATTCAAAACAGCTAAATCCAAAGATTACTTCAACTATGTGAGTTGAATGCACACACAAAAAAGAAGTTTCTCAGAATGCCTCTGGGTACGTTGTCTGCGAAGATATACGCTCTTCCACATCAGGCCGCTAAGCGCACCAAATATCCACTTGCAGATTCTAGAAAAAGAGTGTTTCAAAACTGCCCTATCAAAAGAAACGTCCAACACTGTGAGATGAATGCACACATCACAAAGAAGTTTCTCAGACTGCTTCTTTGTAGTTTTTATGTGAAGATATTCCCTTTTCCAAAGAAGGCCACAAAGTACTCCCAATATCCACTTG;SVTYPE=INV;CHR2=16;END=35235916;SVLEN=1237605 GT ./. E3584653 contig9 size407 5 cov1.86 7759 289 13.3217993079585 65 38.5384615384615 2538 93 11.7204301075269 17 39.7647058823529 224 6 9.5 1 50 91 0 0 0 0 3 0 4 0
16 34187384 N . <DUP> 49.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTATTCAATGATGTTTCCACTTGATTCCATTCGAACATGATTGCCTTTGATTCCATTCAATGATTCCATACGGTTCCATTTGATGATGATTCCATTCGAGTGCATTAGATGATTCCATTCGAGTCCATTCGATGATTCCATTCGATTCCATTCGGTGATGATTCCTTTGGATTCCATTTGATTATTATTTCCTACGAGTGTTTTGTTGAGGTTTTTTTTATAGTCCATTGGTTGTTTCTTCTCTAATCCTTTTGTTGAGTTCTTTTGGTTCCGTCCATCTG;SVTYPE=DUP;CHR2=16;END=46388664;SVLEN=12201280 GT ./. E2176464 contig9 size283 2 cov1.07 1228 87 17.1149425287356 19 46.9473684210526 401 21 19.8095238095238 3 49.3333333333333 22094 138 27.4420289855072 63 56.4603174603175 11909 65 28.4769230769231 31 57.2258064516129 11 0 8 0
16 34191457 N . <INV> 11.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATGATGATTCCATTGATTTCGTTTGATGATTCGATTCCATTCCATTCGATGATGATTCCATTCGAGTCCATTTGATTCCATTCAATTCCATTAGATGATGACTCCGTTCAAGTCCATTCGAAGATTCAATGCAATTTCTTTCGATTAAGATTACATTCGATTCTATTTGATGATTCCATTTGATTCTATTTGATGATGATTCCATTCAAGTCCATTCGATGATTCCATTCAATTCTATTTGATGATGATTCCATTTTTGTCCATTAGATGATTCCATTC;SVTYPE=INV;CHR2=16;END=46431042;SVLEN=12239586 GT ./. E2700583 contig1 size280 2 cov1.08 1309 5 14.6 1 40 540 0 0 0 0 3711 130 11.5307692307692 6 34.6666666666667 2021 54 12.1481481481481 1 40 6 0 5 0
16 34194310 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATGGCCTCAAATGGAGTCATTGAATGGAATCAAGTAGAATAATAATCAAATAGAATCAAATGGAATAATCAAATGGACTCCAATGGAATCATTGGATGGACTCGAATGAAATCATCGAATGGACTCGAATGGAATCATCATCGAATGGAATGGAATGGAAACATTGAATGGAATCCAATAGAATCATCATCAAATGGAATCGAAAGGAATAATCAAATGGAATAGAATGGAATCATCAAATGGACGCGAATGCAAGCATCACAGAATGGAATTGAAAGGAA;SVTYPE=INV;CHR2=16;END=46433212;SVLEN=12238901 GT ./. E513834 contig3 size283 2 cov1.07 1555 9 11.5555555555556 2 36 555 4 1.25 0 0 22528 70 2.02857142857143 1 40 12281 95 3.88421052631579 3 40 4 0 4 0
16 34194361 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCAATGGAATCATTGAATAGAATCGAATGTATTCATCATCAAAAGAAATCACATTGAATTATCGAGTGGACTCGAATGGAATCATCATTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAA;SVTYPE=INV;CHR2=16;END=46442258;SVLEN=12247896 GT ./. E289544 contig1 size213 2 cov1.42 1683 15 11.5333333333333 4 42.5 618 16 5.3125 1 60 893 0 0 0 0 327 1 40 1 40 3 0 4 0
16 34194362 N . <INV> 0.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGAATGGAACAATCAAATGGACTCCAATGGAATCATCTAAAGGAATCGAGTGGAATCATCGAATGGACTCGAATGGAGTCATCATGAAATGAAATCGGATGGAATCAAGGAAGGGAAGCAAATGGAATCAGGGAATGGAATCGAATGGAATCATCGAATGGACTCTAATGGAATCTTCGAATGGACTCAAATAGAATCATCATCGAATGGACCCAAAAAGAATTATCAAATGGACACGAATGGAATCATCATTGAATACACTCAAATGGAATTATCAAATGGAC;SVTYPE=INV;CHR2=16;END=46432899;SVLEN=12238536 GT ./. E3671302 contig1 size284 2 cov1.06 1711 11 4.45454545454545 1 46 636 16 3.875 1 60 22624 34 6.88235294117647 2 40.5 12599 18 2.83333333333333 0 0 3 0 3 0
16 34194401 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCAATGGAATCATTGAATAGAATCGAATGTATTCATCATCAAAAGAAATCACATTGAATTATCGAGTGGACTCGAATGGAATCATCATTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAA;SVTYPE=INV;CHR2=16;END=46442258;SVLEN=12247856 GT ./. E289544 contig1 size213 2 cov1.42 1810 8 18 2 58.5 736 1 0 0 0 893 0 0 0 0 327 1 40 1 40 3 0 4 0
16 34194516 N . <INV> 28.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCGTCTCCTTTCAATGATGATTTCATTCGACTACATACGACGATTCCATATGTTTCCATTTGATGATGATTCCATTCGATTGCATTTGACAATGATTCCATTTGATTATATTCAATGATGATTCCCTTACAATCCATTCGATGATGATTCCATTCGAGTCCATGTGATGATTCCATTCGATTCTATTAGATGATACTTTCATTCAAGGCCATTCGATGCTTGCATTCGAGTCCATTCGATAATTCCATTCCAGTCCATTTCATGATTCCATGCGATTCCATTCAA;SVTYPE=INV;CHR2=16;END=46442245;SVLEN=12247730 GT ./. E356290 contig1 size286 2 cov1.06 980 7 38.4285714285714 6 42.6666666666667 450 3 33.6666666666667 2 40 1002 0 0 0 0 378 3 50.6666666666667 3 50.6666666666667 6 0 3 0
16 35223081 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAAGCATTCTGAGAAACATCCTTGTGAGGTGTGCACTGAAGTCACAGAGTTGAAACTGTCTTTTGATTCAGCAGTTTTGAATCTCTCTTTTTGCAGAATCTGTGAGTGGATATTTGGAGCGCTTTGAGGCCTACTGTGGAAAAGCAAATATCGTCACATAAAAACTTCACAGAAGCATTCTGGGAAACTTCTTTGTGATGTCTGCATTCATCTCACACAGTTGAACCTGTCTTATGATTGAGCAGTATTGAAACACTCTATTTGTAGAATATACAAGTGGA;SVTYPE=DUP;CHR2=16;END=35229415;SVLEN=6334 GT ./. E2013284 contig11 size283 2 cov1.07 134 4 13 1 52 57 0 0 0 0 127 1 2 0 0 43 0 0 0 0 3 0 4 0
16 46397910 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACTCTTTCCCTACACGACGCTCTTCCGATCTCATTGATTCCATCCGATTTCATTGGATGATGACTCCATTCGAGTCCATTCGATGATTCCACTCGATTCCATTAGATGATTCCATTGGGTTCAATTCAATGATGATTACATTGGATTCCGAGATCGGAAGAGCACACGTCTGAACTCCAGTC;SVTYPE=INV;CHR2=16;END=46441162;SVLEN=43253 GT ./. E983477 contig2 size183 2 cov1.65 2780 9 5.22222222222222 1 40 1679 5 30 4 37.5 285 2 1 0 0 107 1 40 1 40 5 0 13 1
16 46414617 N . <INV> 34.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAATCATCATCGAATGGAATGGAATGGAATCATTGAATGGACACTAAAGGAATCATCACCGAATGGAATTGAATGGAATCTTCGAATGGACTCGATTGAAATCATCATCAAATGCAGTCGAATGGAATCATCATCAAATGGAATCGAATGGAATCAACATCAAATGGAATCAAAAGGAATCATTGAATGGAATCAAATGGAATCATCATCGAATGGAATGGAATGGAATCATTGAATGGACACTAAAGGAATCATCACCGAATGGAATTGAATGGAATCTTCGAATGGACTCGATTGAAATCATCATCAAATGCAGTCGAATGGAATCATCAACAAATGGAATCGAGTGGAATCATCGACTGTAGGACTCGATGGTCATCGTTGCGTGGACTCGAATGGAATCAT;SVTYPE=INV;CHR2=16;END=46498966;SVLEN=84348 GT ./. E1149461 contig2 size405 4 cov1.49 280 7 17.1428571428571 2 41 143 2 0 0 0 1001 116 18.8362068965517 36 49.3611111111111 413 35 24.9142857142857 16 47.4375 5 0 7 0
16 56225668 N . <TRA> 1 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGCGGGGGAGGGGGGGGGGGCGGGGGCGGGGGAGGAGGCGGAGGAGGTGGAGGAGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGGAGGCGGAGACGGCACATCTGAAGTCCAGACACGATGAGATCTCGGAGGCCGAGGTCGGCTTGGCG;SVTYPE=TRA;CHR2=22;END=47775117;SVLEN=0 GT ./. E3695831 contig8 size280 2 cov1.08 49 0 0 0 0 29 0 0 0 0 490 7 10.8571428571429 1 40 147 0 0 0 0 4 0 5 0
16 56225717 N . <TRA> 1 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGCGGGGGAGGGGGGGGGGGCGGGGGCGGGGGAGGAGGCGGAGGAGGTGGAGGAGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGGAGGCGGAGACGGCACATCTGAAGTCCAGACACGATGAGATCTCGGAGGCCGAGGTCGGCTTGGCG;SVTYPE=TRA;CHR2=22;END=47775117;SVLEN=0 GT ./. E3695831 contig8 size280 2 cov1.08 71 0 0 0 0 42 0 0 0 0 490 7 10.8571428571429 1 40 147 0 0 0 0 4 0 5 0
16 58624496 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACCTATAGAAATCTCTGACCCAGCGTAGCAGAAGGTCGAACGCAGCATACATGCTACCTTCGCCCTCCTATATGAATGAGTGAGAGAGACCTGTCCTCCAAAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACACCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATCTTCAGAGCGCGAAGCCTCCGAG;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38835 GT ./. E2584078 contig4 size261 2 cov1.16 64 1 60 1 60 38 0 0 0 0 0 50 58.92 50 58.92 40 0 0 0 0 40 0 38 0
16 58624541 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTCGGACTACAAAAAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACCCCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATCTTCAGAGCGCGAAGCCTCCGAGAGCCGTGTGGAGAAGAGTCCGCCCTCTCCCGCCTCGTCCCACTTCCCCGTCCCGGCTGCCTCTCACTCCCTAGAGCTCCGGGAAACGCTTCCAGTGGCCCCAGGTCCACCCCTGTTCCTCCTCCCACCGGCTCTCGCGTTCCCAAGCTGACACCGCCACCCTACCCTAGCCCCTGACGCCAACCCGCCTCACCTCAGGCGGCTCCGGCAGCGCTGGACACAGGAAACTCCTGGGTCCCCGACTCCGGCTCTCCTCGACCCCCTCTTCGGTTAACTCCGCTTGTTTCTCTACAAAATGGCGCCGGAGGTCGCGCGCTCACGTCGCGGCCTTTCCCCTCCCCGTTCCCATTTCATCATTCGCTGCCCGCCCGAGGAGGGATGGCCCCAGAGCCAGCCAATGGCCGCGCCCCGCCTGTGGCTTCTACCCAATCACCGACAGGTGCCCGCGGATTTAAACCAATCACACTCTATCACTTGCAGAAGTCGAGGAAGAAATCAGGCTCCTGCTAGCAACTACCAATCCGGCCTCCTACTTCGCGGACTTTGGCCAATTGCCGCTCACCAGGCCCAGGGGACCGGAGTCAGAGCCCTCGCGCCTGCGCTCGAGGCGAGGGCCAATAGGG;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38790 GT ./. E2584078 contig2 size794 16 cov3.04 53 1 60 1 60 46 0 0 0 0 0 50 58.92 50 58.92 40 0 0 0 0 31 0 28 0
16 58624543 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGGTTGCAGTGAGCAGAGATTGCACCACTGCACTCCATCCTGGATGAGGGAGTGAGACTCTGTCTCCAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACACCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATCTTCAGAGCGCGAAGCCTCCGAGAGCCGTGTGGAGAAGAGTCCGCCCTCTCCCGC;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38788 GT ./. E2584078 contig3 size258 13 cov7.61 52 0 0 0 0 46 0 0 0 0 0 50 58.92 50 58.92 40 0 0 0 0 31 0 28 0
16 58624545 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCATGATAATAACATGAAAGCTGTCTAAGTTCTTAGCTTATTTCAGTTTCCCTTCTCTTCATTCAGAAAATATGGAAGTTAAGAAAGACCATCTCTACCAAAAAAAATAGCTAGGCATGGTGATATACACCTATAATTTCCAGCTACTTGAGAGGCTGATGTATGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCAGAGATTGCACCACTGCACTCCATCCTGGATGAGGGAGTGAGACTCTGTCTCCAAAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACACCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATC;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38786 GT ./. E2584078 contig6 size394 6 cov2.30 50 39 52.2307692307692 36 54.7777777777778 46 0 0 0 0 0 50 58.92 50 58.92 40 0 0 0 0 30 0 27 0
16 78928639 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACAAATTGATTAATGTGTCGAGGGAGCAAGGTGGTACTTATACCTACCCAGCCTGCTTGTGTGTGTCTCAAGGTGGAGAGAGGCTGTGGAAACAATAGAGAGAATAGCATGGAAGGCCACGTTGCAATTAAACAAGATTGGGTGGCCATGGTGCTCACAGTCTCTCAATCCTTTATGTTGAGGGAGAAATGATAACCAGATCTCATTTTGTGTGCCAACCCGAAAGCCTGACTTGACTGCCTCAAATGTTAAGAAGGACTCTAAAGCCCTATCTGGATTCCAAATTTATGGTTGGTGCAGA;SVTYPE=DEL;CHR2=16;END=79095001;SVLEN=-166362 GT ./. E3588582 contig4 size302 24 cov12.00 59 30 58.2333333333333 30 58.2333333333333 40 0 0 0 0 40 28 58.9642857142857 28 58.9642857142857 41 0 0 0 0 16 0 20 0
16 85440528 N . <DEL> 9 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCCCCCGGATGATCCTCACTGTTACACTCAGGGCCCCCCGGGATAATCCTCACGGTTCATCTTTTTTTCAAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCCCCCGGATAATCCTCACTATTACACTCAGGGCCCCCCTGGATAATCCTCACCGTTACACTCAGGCCCCCCGGATAATCCTCACCGTTACCCTTAGGGCCCCCCTGGATACTCCTCACTGTTACTAGCAGGGCCCCCCACCCCGCTTCCCCC;SVTYPE=DEL;CHR2=16;END=85445171;SVLEN=-4643 GT ./. E3654406 contig12 size285 2 cov1.06 53 0 0 0 0 35 1 0 0 0 133 1 16 0 0 119 0 0 0 0 3 0 3 0
16 89966156 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACAAAATTTTCCAGGCGTAGTGGTGCATGCCTGTAATCCCTGCTTCTTGAGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTAGAGATTGTGGTGAACCGAGATCGCGCCATTGCACTCCAGTCTGGGCAATAAGAGTGAAACTCCGTCTCAAAAAAATTAAAAAAGAAAACCCAATATAATAGTGCAGATAAGAGAGAGAATGCTTTCTTTCTCATAAATAAGGATGTTAG;SVTYPE=TRA;CHR2=19;END=28306585;SVLEN=0 GT ./. E1589819 contig1 size238 2 cov1.27 65 0 0 0 0 37 0 0 0 0 670 0 0 0 0 232 0 0 0 0 7 0 3 0
16 90053840 N . <TRA> 15.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGGATGAGGTGGAGGAAGTGGAGGAGGTGGAGGAGGTGGAGAAAGTGGAGGAGGTGGAGGAGGAGGTGGAGGAGGAAGAGGTGGAGGAGGAGGAGGGAGGGGAGGGAGGGGAGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGAGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGGAGGAGGTGGAGGAGGAGGAAGGGGGTGAGGAGCAGGAGGAGGAGGAGACAACCAGATAGGCATGGGGATGGTTCC;SVTYPE=TRA;CHR2=3;END=150421610;SVLEN=0 GT ./. E1003330 contig3 size280 2 cov1.08 261 0 0 0 0 109 0 0 0 0 178 0 0 0 0 65 3 47 2 60 6 0 3 0
17 5964324 N . <TRA> 30.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACAAAAAACCAAACGCTCAGTCGCTACAAACACCAAAATGTGGCTGGGCCCGGTGGCTTACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGTGGATCACTTGACTGGTCAACAGGGTGATATCTCATCTCTACTAAAAATACAAAACTAGCTGGGCGTGGTGGTGCATGCCTGTACTCCCAGCTACTCAGGAGGCTGGGGCGGGAGCATTGCTTGCACCTGGGAGGCGGGGGATGCGGTGAGCCGCGATCCCGCCATTGCACAGCAGTCGGGGCGC;SVTYPE=TRA;CHR2=21;END=40091719;SVLEN=0 GT ./. E3286814 contig12 size284 2 cov1.06 114 1 60 1 60 35 0 0 0 0 97 12 59.9166666666667 12 59.9166666666667 50 1 60 1 60 0 0 0 0
17 30506307 N . <TRA> 30 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGTCTGGGAAGTGAGGAGCACCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGGGGAGCACCTCTACCTGGCCGCCCCGTCTGGGAAATGGGAAGCGCCTCTGCCCGGCCGCCCCGCCTGGGCAGTGTGGAGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCCCCCCGCCCGGGGGGGTGGCGGGGGGGGGGGGGGGGGCGGGCCGCCCTGCCCGGGGGGGGGGTGGGGGGGGGGGCGCCGCGCGGGGCGGGGCGGCC;SVTYPE=TRA;CHR2=5;END=83608291;SVLEN=0 GT ./. E2441735 contig2 size284 2 cov1.06 113 4 42.75 3 48.6666666666667 32 1 60 1 60 83 2 0 0 0 57 0 0 0 0 3 0 4 0
17 38916114 N . <TRA> 32 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATTATAGTTACAATAATTTGTTAAGGAATACACAATATAAACAGATGCAAATTGTGACATCAGAAACATAAAAAATGGGGGTGGAATAAGAGTATAGAGTCTTTAATGTGGTCAGAATTAAGTTGCTATCAGTTTAAAATAGCCTGTTATAAGTGTATTTTATATAAGCCTCATAGTAACCACAAGCAAAAGCTATATCAAATACAGA;SVTYPE=TRA;CHR2=7;END=146035843;SVLEN=0 GT ./. E3795251 contig1 size210 3 cov2.16 123 42 1.5952380952381 0 0 47 4 2.5 0 0 182 152 51.7302631578947 133 58.9473684210526 56 28 50.7857142857143 24 59.25 11 0 6 0
17 41384891 N . <TRA> 31.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCTCAACCACACACCCACCCCCACACACACACACCCACACACACACACACACACTTTTTTAATGGTACGGCGACCACCGAGATCTACACTCTCTCCCTACACGCCGCTCTTCCGATCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTAAGGTCAAGAGATCAAGACCAGCCAGGCCAACATAGTGAAACCCCGGCTCTACTAAACCCCCCCCCCCTACCACCGGCCCACCGCCCGCCCGCGGCCCGCCC;SVTYPE=TRA;CHR2=15;END=92798033;SVLEN=0 GT ./. E1829101 contig2 size270 2 cov1.12 99 12 47.4166666666667 11 51 32 1 60 1 60 157 1 60 1 60 55 0 0 0 0 2 0 2 0
17 42598156 N . <TRA> 59.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGTTTCACCATGTTGCTCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCTGCCCACCTTGGCCTTCCAAAATGCTAGGATTACAGGCATTAGCCACCACACCAAACCTAGTCTTCTTCTTTTTTTTTTTTTTTTTTAACGGGGTCTCTCTCTTTGTTTCCCCTGCTGGTGGGCAGGGGCGGGATCACTGCAGCCTAGACCTCCTGGGTTCAAGCAATTCTCCCATCTCAGCCTTTCTGGTATCCGGGACCCCAGGCGCGTGA;SVTYPE=TRA;CHR2=9;END=32664763;SVLEN=0 GT ./. E4342211 contig1 size266 2 cov1.14 123 10 60 10 60 44 1 60 1 60 139 2 60 2 60 35 0 0 0 0 0 0 0 0
17 43442995 N . <TRA> 17.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=11;END=6153093;SVLEN=0 GT ./. E332019 contig1 size286 2 cov1.06 129 5 48.8 4 55 48 5 51.6 4 59.25 809 1 60 1 60 268 0 0 0 0 3 0 33 2
17 43443175 N . <TRA> 17.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=11;END=6153093;SVLEN=0 GT ./. E332019 contig1 size286 2 cov1.06 121 0 0 0 0 51 0 0 0 0 809 1 60 1 60 268 0 0 0 0 3 0 33 2
17 64794712 N . <DUP> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGATGATGGGGTGATGGTGCTAGTGGAGATGATGGGGATGATGGTGATGGTGGTGGTGATAGGGGTGGGATGGTAGTGGTGATGTGGGTGATGGTGATTGTGATGGTGGTGGTGGTGGGGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGATGTGGTAGTGTTGTGGTGGTCGTGGTGGTGGTGATGGTGGTGGTGGTGGTGATGGTAGTAGTGATGGTGGTGGTGGTGGTAGTGGTGGTGGTGATGTGGTAGTGTTGTGGTTGTGCTAGTGGTGGTGGT;SVTYPE=DUP;CHR2=17;END=75480417;SVLEN=10685705 GT ./. E2656424 contig1 size283 2 cov1.07 3871 22 7.18181818181818 0 0 1357 8 4.25 0 0 117 2 56.5 2 56.5 45 1 60 1 60 10 0 9 0
17 75550263 N . <TRA> 31 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGCCCTGGTGGGAGACAGGCTTCCTTTCTCTCAGTTTCCTGGATCCTCTTCAATAAAGAGCCCCCCTCCACGGTTCTGCCCCTTACCAATGTTGTTTCTAGCTCCATCCCATCCTTCTACACCCAGAGTGTTGCTTTTTTTTTTTTTTTTTTTTTGCGGAGGCTCACTCCT;SVTYPE=TRA;CHR2=Y;END=18867343;SVLEN=0 GT ./. E452454 contig2 size172 2 cov1.76 107 14 57.1428571428571 14 57.1428571428571 36 0 0 0 0 11 1 0 0 0 27 0 0 0 0 0 0 1 0
17 75857719 N . <TRA> 49 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGGAGGAAGGAAGGAGAGATGGATGGATGGATGGATGGGTGGATGGATGGATGGGTGGATGGACAGATGAATGGATGGGTGGACGGATAGAAGCAAGGAAGAGCATATGGATGGGTGGATGGACCCTTTGCTCAAGATACTCCCTGGAACTGCAGAGAAAGGGGTTAAGCAAGAGGGTGAGGAAAGACTGGTTCAATACTTCAGGAAGGCTCCACATGAAATTTCCACAGGCACTAAAACCACCCAGCAGCTGTCCAGAGTCCTGGTGTCCCTGCTTACCCTAGTGTCTCTGCCCACACCTTGGAGATGGGAAGTGGAGGCCAACTGGGGAATAGGAGGAACCCAGAAAACCTCAGCAGTC;SVTYPE=TRA;CHR2=5;END=6189669;SVLEN=0 GT ./. E1805949 contig1 size362 3 cov1.25 108 16 53.5 14 58.5714285714286 33 0 0 0 0 78 4 48.5 4 48.5 45 0 0 0 0 0 0 0 0
18 10691781 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATACAATATATATAATATAAAAAAAATATATAAACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATAGAAAGAGAGAGAGAGGATCCATTTGGAATATGTAGGAGAAAGAATTCTGATAGGTGGACTCTCAATTTCTTTTTACTATTCAT;SVTYPE=TRA;CHR2=X;END=6270949;SVLEN=0 GT ./. E2638067 contig3 size203 4 cov2.98 71 41 36.219512195122 26 54.1153846153846 44 2 60 2 60 57 0 0 0 0 17 0 0 0 0 4 0 5 0
18 12933934 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGATTGTTGTAAATAATAACACGGCTTCTAGCTAGGCACAGTGGTTCATGCCTGTAGTCCCAGAACTTTGGGGGTGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAATTTGAGGCTGCAGTGAGCGATGATTGCATCACTGCACCCACCGCTTCCAGGGCTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGATCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTCTCGCCGTGTTGGCCAGGCT;SVTYPE=DEL;CHR2=18;END=12934262;SVLEN=-328 GT ./. E2306109 contig2 size278 5 cov2.72 77 9 47.5555555555556 8 50.625 36 1 60 1 60 79 7 45.2857142857143 5 53 28 0 0 0 0 493 223 513 225
18 23773548 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGCTGGGATTACAGGCTGAGCCACTGCACCTGGTCTTAATGTTCTTTTTTGAAAACGAGGGGAGAGGTTCAGTTTTTGCAGAGGAATGAAAATAGTAGGGGAAGGCCAGGCGTGAGCCACCGTGCCCGGCCTCCTATGAGAATTGTTACTGCCGCCACTGATCTCACAGGTGACAGAGCTCATGTGGTAATGCTCGCTCCCCCCACCCCCCTACT;SVTYPE=DEL;CHR2=18;END=23774044;SVLEN=-496 GT ./. E3275785 contig1 size217 6 cov4.18 69 12 60 12 60 28 0 0 0 0 84 12 57.5833333333333 12 57.5833333333333 31 1 60 1 60 496 203 474 188
18 39322354 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTTTATGTACAGAACTACACCTACTTCTATACAAATATACTTTCTGAAAAGTTTATTACAGTGAATTGATTTTACTATGGGTACAAAAGATAAGGGGAAAAAATGGAGCTTTTGAGGCAGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTCCAGATGGAGTCTTGCTCTGTAGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAG;SVTYPE=TRA;CHR2=6;END=38335583;SVLEN=0 GT ./. E3025065 contig1 size268 2 cov1.13 101 9 55.5555555555556 9 55.5555555555556 38 1 60 1 60 140 14 54.3571428571429 13 56.9230769230769 43 1 60 1 60 1 0 0 0
18 41194050 N . <TRA> 15 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATATATATATTATATATCATATATAATATTATATAATATTATATATGATATATATATTATATATATCATATATAATATTATATATATATTTTATATATATAAATATATATATATGATATATATATATATATATATAAAGAAAAACTACAAAACCAATGACATCCAAAATAATTA;SVTYPE=TRA;CHR2=X;END=147277766;SVLEN=0 GT ./. E109058 contig1 size175 2 cov1.73 2 1 0 0 0 4 0 0 0 0 12 14 43.7142857142857 10 54.6 7 0 0 0 0 9 0 3 0
18 41194138 N . <TRA> 15 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATATATATATTATATATCATATATAATATTATATAATATTATATATGATATATATATTATATATATCATATATAATATTATATATATATTTTATATATATAAATATATATATATGATATATATATATATATATATAAAGAAAAACTACAAAACCAATGACATCCAAAATAATTA;SVTYPE=TRA;CHR2=X;END=147277766;SVLEN=0 GT ./. E109058 contig1 size175 2 cov1.73 15 0 0 0 0 3 0 0 0 0 12 14 43.7142857142857 10 54.6 7 0 0 0 0 9 0 3 0
18 43690291 N . <TRA> 10.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGTATGGAGTGAAATGGAACAACCATATCCCCCGGTTCCCTTAACCAGGGGCCAAATAGCCCCCCTCCCCCCCCTCCCGAAGAAAATAGACTACAGGTGTCCCCCCCCCCCACCGGGCAAATTTTTAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGTGGGTTTTTTTTCAAATTTTTAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT;SVTYPE=TRA;CHR2=12;END=120990906;SVLEN=0 GT ./. E4375009 contig1 size278 2 cov1.09 120 3 0 0 0 39 1 0 0 0 303 7 0 0 0 120 1 0 0 0 4 0 5 0
18 58832629 N . <TRA> 54 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACTAATTTGTTTCACATTGAAGTGGTACATGCTGTGTGTTTATGCCATTACTAGAGCCAACACTGAAATATCATTTGATATGTATCTGAAGCCTTCTATCAGGCTCCAAGATAAGAAAGAGGCAGTTTTTTTTTTTTTTTTTTTTTGTGACAGTCTTGCTCTGTCGCCTTGGGTGGAGGTCAGGGGCGTGGTCTCAGCTCACTTCAGTTTCTTCCTCCTGGGTTCAAGCGATTCTCCTTCCCCTGCCTCCCCAGTAGATGGGACTCCGCG;SVTYPE=TRA;CHR2=19;END=3380629;SVLEN=0 GT ./. E1543586 contig1 size271 2 cov1.11 108 14 57.1428571428571 14 57.1428571428571 28 1 48 1 48 76 8 55.375 8 55.375 34 1 18 0 0 0 0 0 0
18 65084575 N . <TRA> 30.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAGTAAATCATCACTATCTTCACATAATAGAGCATCGAGGTAATTGAAGAATTTCCCTGGTCTTAGCAATTATGGCATCATTGATTGTATCATTTTGATGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAATTCTTTCTTTCTTTTTTTTTTTTTTTTGTTTTTTTGATGCTTTTTTGTTGCCCA;SVTYPE=TRA;CHR2=10;END=10641678;SVLEN=0 GT ./. E1586587 contig1 size190 2 cov1.59 125 15 49.7333333333333 12 60 39 1 60 1 60 111 0 0 0 0 46 0 0 0 0 1 0 1 0
18 66379462 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTAAGGTAACTGAACAGGAAACAAAGGTGGTCTTGTAGGGCCTAGACAGTGTGGCCCAAGTCATTGGAACACATAGGAATGGCTAAGCGAAACCCAGAGACATGTCAGCTGCAATCAGCTTTAATGCATTTTTGCCAAAGTAAGGATTGCCTCTTTAAAAACTTTCTCTTGAAACTTGAGAACATGAAGTTAAGCGTAGGATATTTTTTGATGGCTCTTTTCTGATTATTTTGGAACTAGATAAAGTAGTATGAAATATTT;SVTYPE=DEL;CHR2=18;END=66382826;SVLEN=-3364 GT ./. E1600720 contig1 size262 8 cov4.61 96 15 59.7333333333333 15 59.7333333333333 49 0 0 0 0 88 16 58.875 16 58.875 59 0 0 0 0 9 0 9 0
19 1164457 N . <TRA> 15 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACTGCGCCAGGACAAAGCCTCCCCCGGGCACAGGAACAGGTGCTAGGACACTGTGGGGACGTCCCAGATGCCAGGGGGAGTGGAGACAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAACAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGAGGAGAGAAGGAAGAGGAGGAGGAGGAGGAGAGAGCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGGTGGTCGCCGTAGCAGTAAAAAAG;SVTYPE=TRA;CHR2=7;END=132247702;SVLEN=0 GT ./. E4010497 contig2 size285 2 cov1.06 169 0 0 0 0 72 1 40 1 40 185 2 17.5 1 35 39 1 60 1 60 4 0 17 0
19 10298694 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGTGGTCCTAGCTACTCAGGAGACTGAGGCAGGAGGATCACTAGAGCCCAGTGAGCTATAATTGTGCCGCTGCATTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAT;SVTYPE=TRA;CHR2=3;END=63661065;SVLEN=0 GT ./. E60231 contig12 size188 2 cov1.61 126 0 0 0 0 49 0 0 0 0 156 2 0 0 0 38 0 0 0 0 12 1 3 0
19 11575904 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACATATACATACACACCATACACACACATATATACACACTACACACACACCACACACACATACACATATACATACACATCACACATATATACACACTACACACACACACCACACCACACATACATACACATATACATACACACCACACACACATACACATACACACCACACACAAACATACACACCACACACACATACACATACACACCACACACATACATACACACCACACACACACACACACACACA;SVTYPE=TRA;CHR2=15;END=94595141;SVLEN=0 GT ./. E2036269 contig1 size252 2 cov1.20 262 1 60 1 60 113 0 0 0 0 328 9 0.666666666666667 0 0 96 1 0 0 0 11 0 9 0
19 16112060 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTTCAGAAGTGCTTCAAGGAAGTGATGAAAGCCCTAGGCAGTTTTATGAAAGATTCTGTGAGGCATACTGGCTTTCACCCCGTTTGACCCTGAGGCCACTGAAAATCAGTGTATAATGAATATGTCATTTGTAGGACAGGCCCAAGGTGATATCAAATGAAATCTTCAGAAGTTAGAAAGTTTTGGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACGAGGTCAGCAGTTCAAGATCAGCATGG;SVTYPE=INV;CHR2=19;END=58440078;SVLEN=42328017 GT ./. E56188 contig1 size276 3 cov1.64 362 47 13.3829787234043 16 38 122 12 19.1666666666667 6 38.3333333333333 82 12 0 0 0 28 2 0 0 0 6 0 6 0
19 17396811 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAGACATGGGTTCAAGATATGTTGTGACTTTAAGGACTGCCTCTGGGGACCACTGTATCCACTTTTCCCTGTCTGAGCTATCCCCTTCATCCAGGGAGACTCAGGACCTGCCAGCCCGAGCCTTCTCACTGACCCCAGCTGAGCGCCTTCAGACTTTCATCCGTGCCATCTTCTACGTGGGCAAAGGGACGAGGGCCCGGCCATATGTCCACCTCTGGGAGGCCCTTGGTCACCATGGGCGGTCAAGAAAACAGGTGTGAGGACAGGGATCAGGGTTCAGCGAGGGCAGTCGGGCCATGGGCAGGGGAGGGTATTGGGGGTGCTGACTCCTGATTCTGCCCTAGCCCCACCAGGCCTGCCCCAAGGTGCGTCAGATCTTGGACATCTGGGCCAGTGGTTGCGGCGTTGTGTCCCTACATTGCTTCCAGCACGTGGTCGCTGTGGAGGCTTATACACGGGAGGCGTGTATTGTGGAAGCCCTAGGTGGGTGCCTGGTACCTAGAATGGGGGTCATATGAAAGGCATTTGGCTTCCCAGTTCCCTCATTTTTTTCCTTCTGAGGGGTGTTCATTTGTTGACTGAGCAATTATTGAGCACCAACTTTGAACCTGCACACGCATGTATTTTGCTCCATTGGTTTATCCCCACTCAAGGGCAATACACATTCAAAGCATAAAAATTACATGACCTATGATATTTATTTTGCTAAGATTTTTCACAAAACCCCATCATAATCAGAGATAAGGTAACTCCTGGAG;SVTYPE=TRA;CHR2=10;END=7059511;SVLEN=0 GT ./. E978440 contig1 size758 27 cov5.38 113 41 58.5121951219512 41 58.5121951219512 32 0 0 0 0 76 42 59.4047619047619 42 59.4047619047619 50 0 0 0 0 56 0 54 0
19 17397640 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATGCCCGTAAAGTGCTTGTTATTATGGAAATGTTTCATGCGTGACCATCAGCAATGTCAAGACATGAGAGATTATGTTCCCAAGAAGGCGTTATTAGTTTGAGTTTAATTTGGTTTATTGGGCAGTACACTTAAAGCACAGGAGAAGGTGCTTTGGAACAGTCCGGTGCTTCTGTAAGAGGCGTTTGAACCTGGGCAACTCCCCCTGGAATAGGAGCTGGGTAAAATGAGGCTGAAACCTACTGGGCTGCATTCCCAGATGGTTAAAGCATTCTAAGTCACGGGATC;SVTYPE=TRA;CHR2=10;END=7132876;SVLEN=0 GT ./. E4396089 contig1 size288 22 cov11.53 51 27 59.5555555555556 27 59.5555555555556 42 0 0 0 0 135 27 59.1481481481481 27 59.1481481481481 50 0 0 0 0 62 1 53 0
19 20420783 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTAGTAGAGACGGGGTTTCACCATTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAACTTTTTGTATTTTTAATAGAGATGGGGTTTCAGCATATTGGTCAGGCCAGTCTTGAACTC;SVTYPE=TRA;CHR2=15;END=93835784;SVLEN=0 GT ./. E4341469 contig1 size182 2 cov1.66 125 4 0 0 0 38 0 0 0 0 148 5 23.8 2 59.5 48 2 18.5 1 37 4 0 5 0
19 20751038 N . <INV> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCACTGGAGGTAGAAAGAGAACACAGCCTTTGAGCAAGCTAAGCAAGCAGTGCATCTGGCCCTGGATGGCCCATATGGGATGGGCCAGTAGAATTGCAAACAACTGTCCTGGATTAACATGCTAATTGGAGCCTTGGGCAGAAACAAGATGGGAAGAGGGGACTCTTGGGGTTTCAAACCCGGAAGCTGCCAGAGGCTGGCGAAGCTTATAATCCTTTTGAGAAGCGACTGTTAGCTTGCTATCGTGCTTTGCTGGAAA;SVTYPE=INV;CHR2=19;END=20956727;SVLEN=205690 GT ./. E1807511 contig1 size259 2 cov1.17 252 11 10.1818181818182 1 43 63 0 0 0 0 179 0 0 0 0 53 0 0 0 0 4 0 3 0
19 24531112 N . <DEL> 3 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATATATACACATGAAAACTAGACAGAAACATTATGAGAAACTGCTCTGTGATGCGGGCATTCATCACCAGAGTTGAACCTTTCTTTTGATTGAACAGTTTTGAAACATTCTTTCTGTAGAATCTGAAGGGGATATTTGGAGCGCTTTGCAGTTTTTGGTGGAAAAGGATATATCTTCACATAAAAAATAAACAGAAGCA;SVTYPE=DEL;CHR2=19;END=27864806;SVLEN=-3333694 GT ./. E799961 contig1 size201 2 cov1.50 2439 61 12.2622950819672 12 39.5 776 15 11.1333333333333 3 40 1427 331 5.21450151057402 15 48.2 450 89 4.59550561797753 2 44 11 0 11 0
19 24599941 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGATCAATGCACACATCACAAAGAAGTTTCTCAGAATGCTTCTGTATAGTTTTTATCTGAAGTTATTTGCTTTTCCACGATAGGCCTCAAAGCACGCCAAATATCCACTTGCAGATCCTATGAAAAGAGTGTTCCAAAACTGGTCAATCATAAGATAGGTTTAACTCTGTGAGTTGAATGCACAATCACGAGGAAGTTTCTCAGAATGCCTCTGTGTGCTTTTCATTTGAAGGTATT;SVTYPE=INV;CHR2=19;END=27892057;SVLEN=3292115 GT ./. E1695635 contig1 size238 2 cov1.27 1578 26 14.3461538461538 4 41.25 585 12 12.5833333333333 3 38.6666666666667 576 53 4.75471698113208 1 59 193 16 2.4375 0 0 3 0 6 0
19 27764756 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACACGACGCTCTGCCGATCTTACCTTTTCATAGAACAGCTTTGAAACATACTTTTCGTAGAATCTGCAAGTGGGTGTTTGGACTGCTTGGAGGCCTTCATTGGAAATGGGAATGTCTTCACATATAAGCTAGACAGATTCATTCTCAGAAACTTCTATGAGATGTCTGCTTTCAACTCACAGAGTTGTACCTTTGTTTTGATAGAGCAGTTT;SVTYPE=DEL;CHR2=19;END=27769129;SVLEN=-4373 GT ./. E3701409 contig1 size213 2 cov1.42 353 19 4.52631578947368 1 60 121 1 0 0 0 1323 71 16.5070422535211 23 38.2608695652174 488 28 13.25 5 38.2 3 0 4 0
19 28306585 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCCTCCACCACTATGCAGATAGAAAAAAGTCTTAGGAAAGTGACATAACATCCAGAATTACACAGAGATTCCATGGCAAAGCTAGCACTTTAGTTAGGATTACATTTTCCTACATATAGAAGAAAACCCAGACCGGGTGCTGTAGTTCACGCCTGTTATCCCAACACATTGGGAGGTTGAGGCAGACGGATCACCAGAGGTCTGGAGTTTAAGACCAGCCTGACCAACATAGAGAAACCCAGTCTCTACCAAAAATACAAAATTTTCCAGGCGTAGTGGTGCATGCCTGTAATCCCTGCTTCTTGAGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTAGAGATTGTGGTGAACCGAGATCGCGCCATTGCACTCCAGTCTGGGCAATAAGAGTGAAACTCCGTCTCAAAAAAATTAAAAAAGAAAACCCAATATAATAGTGCAGATAAGAGAGAGAATGCTTTCTTTCTCATAAATAAGGATGTTAGAGCTGGGCAGTCTGACTCTGAACTGTACACGAAGGTAGTCAA;SVTYPE=TRA;CHR2=16;END=89966159;SVLEN=0 GT ./. E3025043 contig1 size536 5 cov1.41 670 0 0 0 0 232 0 0 0 0 62 0 0 0 0 38 0 0 0 0 3 0 6 0
19 32576039 N . <TRA> 3 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCACCCATCCACCCATCCATCCCTCCCTCCACCCACCCCCCCATCCATCCATCCATCCACCCATCCACCCACCCACCTATCCATCCGCCTATTCATCCATCCAACCATCTGTTCATCCATTCATCCATCCATCCATCCATCCACCATCCATCCATCCACATCCATCCATTCATACATCCATCATCCTCCCATTCATCCATCCATCCACCATCCATCCATTCATTCATCCATCCATCCATCCATCCATCCCTCCACCCACCCACCATCCATCCACCCC;SVTYPE=TRA;CHR2=9;END=137576903;SVLEN=0 GT ./. E2029293 contig1 size283 2 cov1.07 183 2 15 0 0 51 1 12 0 0 222 4 49.25 4 49.25 86 2 42 1 60 3 0 4 0
19 32576158 N . <TRA> 3 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCACCCATCCACCCATCCATCCCTCCCTCCACCCACCCCCCCATCCATCCATCCATCCACCCATCCACCCACCCACCTATCCATCCGCCTATTCATCCATCCAACCATCTGTTCATCCATTCATCCATCCATCCATCCATCCACCATCCATCCATCCACATCCATCCATTCATACATCCATCATCCTCCCATTCATCCATCCATCCACCATCCATCCATTCATTCATCCATCCATCCATCCATCCATCCCTCCACCCACCCACCATCCATCCACCCC;SVTYPE=TRA;CHR2=9;END=137576903;SVLEN=0 GT ./. E2029293 contig1 size283 2 cov1.07 129 0 0 0 0 39 0 0 0 0 222 4 49.25 4 49.25 86 2 42 1 60 3 0 4 0
19 33516902 N . <TRA> 40.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTGCGTGTCTATGAAATGTGACTACGCGGAATTACTGAAAATTAACTATAAAATCCAAGGCATCTAACTTTTAAACTTATCTTGGCTCATCACGTATATTTACACTAGATTTTATACTGTGTTCATTTGTTTTTTTTTTTTTTTTTTTTTTTGGACGGAGGCTCCCTCTGTCCCCCCGGCTGGCGTGCAGTGGCATGATCCCGGCTCACTGCAAGCTCCACATCCCCGGTTCCCCCCACCCCCCTGCCTCCGCCCCCCCGGGAGCCGGGGCTCCAGGG;SVTYPE=TRA;CHR2=1;END=232767747;SVLEN=0 GT ./. E896206 contig2 size280 2 cov1.08 101 4 50 4 50 47 1 60 1 60 140 10 58 10 58 37 1 60 1 60 1 0 1 0
19 39942466 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTACAGGTGCCCACCACCGTGCTGGGCTAGCTTTTGTATTTTTAGTAAAGACGGGGTTTCACCACATTGGCTAGGCGGGTCTTGTACTCCTGATGTCAGGTGATCCACCCGCTTTGGCCTCCTAAAGTGTTGGGATTACAGGCATGAGCCACTGCACCCGGCCAAGATACCCCTTCTCTGACCGCTCCGGGCTAGGCCCCACCAAGCTCGGATTTTTTTTTTTTTTTTTTTTTTGTACATAATCTTATCCCCGCCTCTAGACGGAAGTAGCGTGCGCATAGCAA;SVTYPE=TRA;CHR2=1;END=205224331;SVLEN=0 GT ./. E3754240 contig1 size286 2 cov1.06 94 0 0 0 0 41 0 0 0 0 109 17 58.5882352941176 17 58.5882352941176 39 0 0 0 0 0 0 0 0
19 42442594 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGTGGTGGGGTCCTTGGTCTTTTGGGTTGGGGGGGGGGGGGCTGGGGGTCTGGGTTCCTGGGTTTGGGGGGGGGGGGGCTGGGGCCTGGGCTCATGAGGTTGGGGGGGGGGGCTGCTGGGGGCCTGGACTCCTGGGTCTGAGGGAGGAGGGCCTGGGGCCTGGACTCCTGGGGCCGAGGGGGGGGGGGCTGGGGCCGGCGCACCCGAGACAAAGGGAGGAGACTGCTGGGGGCCGGGACTCATGAGTAAGAGGGAGGGGAGAGTGGGGGGCGGGC;SVTYPE=INV;CHR2=19;END=51580963;SVLEN=9138368 GT ./. E2535918 contig1 size277 2 cov1.09 76 2 17 0 0 38 0 0 0 0 81 0 0 0 0 16 0 0 0 0 3 0 3 0
19 43115024 N . <TRA> 20 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCCCGGACGGGGCGGCTGGCTGGGCAGGGGGCTGATCCCCCCACCTCCCTCCCGGACAGGGCGGCTGGCCGGGCAGAGGCTGCATTCTCGGCACTTTGGGAGGCCAAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTG;SVTYPE=TRA;CHR2=2;END=32519029;SVLEN=0 GT ./. E27212 contig3 size195 2 cov1.55 118 2 0 0 0 39 0 0 0 0 112 0 0 0 0 46 0 0 0 0 3 0 4 0
19 45105428 N . <TRA> 5.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACTAGCTTGAAAAGGTGGTGTCTGATTTACATAGGGCACGAAAGATTAGTCAGACCAGGTGTGCCATTTGCATAGCACATGAAGAAGCTGGCCACCCACCCTAATATTTTATTATGCAGATGGGTTCTTTACCTGGCTGGCGCCATGTTGCCTGCTTTTTACTGTACGCGTGGTGACAAAGAGAAGGGGAGATGGAGCCTCCACATTGAATGCACCTTTTCTATTGGCACAGCTGCCAGCATTCACCCAAGCGAGCTTCCA;SVTYPE=TRA;CHR2=13;END=97542894;SVLEN=0 GT ./. E515722 contig2 size262 2 cov1.15 185 16 3.25 0 0 38 1 7 0 0 99 0 0 0 0 50 0 0 0 0 5 0 4 0
19 50644327 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACCGCGATCCACACTCTTCCCCCACACGACGCTCTTCCGCTCTGCCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCCCCCCCGCTGGGAGGGGTGGCCAGCGGCTCGGTGCGCCCGCGCCACGGCGACGCCCGGCGGAGC;SVTYPE=TRA;CHR2=2;END=114152908;SVLEN=0 GT ./. E1158954 contig12 size286 2 cov1.06 118 0 0 0 0 46 0 0 0 0 113 1 0 0 0 44 1 0 0 0 5 0 5 0
19 58254173 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAAAAAAAAAAAAAAAACACAACCAAATTAGCCGGGCGTGGTGGCACATGCCTATAATTCCATCTACTCGGGAGGCTGAGGAGAATGGCATGAACCCGGGAGGCTGAGCTTGCAGTGAGCGAAGATCACGCCACTTCCTCCAGCCTGGGTCACAGAGCGAGATTCCGTCTCAAA;SVTYPE=DEL;CHR2=19;END=58254624;SVLEN=-451 GT ./. E3420068 contig2 size177 4 cov3.41 148 0 0 0 0 41 0 0 0 0 54 9 56.1111111111111 9 56.1111111111111 28 0 0 0 0 489 173 494 184
2 5181912 N . <TRA> 4.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTTCCCCCCCCCCATCCCCTCCCCTTCCCTTCCCCCCCCCCTTCCCTTCCCCTTCCCCTTCCCCCCCCTGTTCCCTCCCCCTTCCCTTCCCCCCTCCTTTCCCTTCCCCTTCTCTTTCTCCCTCCTATACCTTCCCCTTCTCTTTCTCCCTCCTATACCTTCCCCCTCCTCTTCTCCCCTCTTTTCCCTTCCCCTTCTCTTCCCCCCTCCTATACCTCCCCCTCTCCCCCCTCCCCTCCCATCCACCTCCCTCTCCTC;SVTYPE=TRA;CHR2=1;END=240348388;SVLEN=0 GT ./. E3891429 contig2 size260 2 cov1.16 72 0 0 0 0 34 0 0 0 0 1810 13 8.92307692307692 0 0 862 13 7.84615384615385 1 30 3 0 9 0
2 15207583 N . <DEL> 44 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGAGGAGGGGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGAGGGGAGGGGAGGGGGGGGGGGGGGGGGGGAGGGGAGAGGAGGGGAGAGGAGAAGAGAAGAAAAGAAAGAGAGTAAGAAAGGAATCCTACCACGTGCCACAACATGGATGAGCCTGAAGGACATTATGTTAAGTGACATGTTAGTTGCAGAAGGACAAGCACTGCATGAT;SVTYPE=DEL;CHR2=2;END=33141512;SVLEN=-17933929 GT ./. E2591711 contig1 size241 2 cov1.25 79 6 51.3333333333333 5 60 37 2 20 1 40 386758 2303 2.19366044290056 8 34.875 141756 871 2.11710677382319 1 34 6 0 18 1
2 87625319 N . <INV> 27 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCAGCCAGGCGAGCCACCCAAGCCCCCCCTCCAGCCCACGCCGCCCACCCAGCCCGCCACCCAAGCCCGGCCCGCCAGCCAAGCAAGCCAGGCAGCCAAGCCAGCCAACCCAGCCAGCCAGCCAAGCCAGCCATGCCAGCCAAGCCATCCAGTCAGCGAAGCCAGCTGGCTAGCCAAGCCAGCCAAGCCACACGGCCTGCCAAGCCAGCCAGCCAAGACAGCCAAGCCAGCCAACCAGCCAAGCCAGCCAGCCAAGACAGCCAAGCCAGCCAACCAGCCAAG;SVTYPE=INV;CHR2=2;END=91697227;SVLEN=4071909 GT ./. E1768166 contig3 size283 2 cov1.07 985 51 6.64705882352941 4 35.5 327 23 5.69565217391304 2 35.5 207 1 38 1 38 73 2 24 1 34 4 0 4 0
2 87647647 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCAGCTAGCCAAGGCGGCCAACCAGCCAGCCAGTCAAGCTGACCAGCCTGCCAGCCAACCAACCCGGCCAGACAGCCAAGGCAGCCAAGCCGGCCAGGCAGCCAAGCCAGCCAAGCCACTGACCCAGCCAAGCCACCCAGCCAGCCAAGCCTGCCAAGAGACCCACCAACCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCAAGCCACCTCACCCAGCCAGCGAAGCCAGCCAGCCAGCCAACCAGCCCAACCTACCAAGCCACCCAGCCAGCCAAGC;SVTYPE=DEL;CHR2=2;END=87730484;SVLEN=-82837 GT ./. E2838477 contig2 size280 2 cov1.08 228 1 16 0 0 86 0 0 0 0 744 4 0 0 0 261 0 0 0 0 11 1 17 1
2 87724873 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGCCTGCCAGCCAACCAAGCCGGCCAGACAGCCAAGGCAGCCAAGCCGGCCAGGCAGCCAAGCCAGCCAAGCCACCGACCCAGCCAAGCCACCCAGCCCGCCCAGCCAGCCACGCCAGCCAGCCCAGCCAGCCAGCCAAGCCAGCCCGCCAAACCAGCGAAGCCACCCAGCCAGCCAAGCCACCCAAGATCCCCAGCCAGCCAGTCAGCCAAGCCAGCCAACTAGCCAAGCCAGCCAAGGCAGCCACCAGGCAAGCCAGCCAGCCAGCCAAGCCAGCCAAGC;SVTYPE=DEL;CHR2=2;END=87730525;SVLEN=-5652 GT ./. E51689 contig1 size283 2 cov1.07 332 5 0 0 0 104 4 5.5 0 0 647 4 0 0 0 215 1 0 0 0 4 0 5 0
2 87725047 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGCGGGCTGGGCTGGCCGGCTGGGGCGGCCGGCGGGCTGGCCTGGCTGGCCGGCTGGGTTGGCTGTCCGGGCTGGCTGGCTGGGCTGGCTGGCTTGGCTGGCCGGGTGACTTTGCTGGCTTGAATGGCTGAGTGGATTGGCTAGCTTGGCTGGCCAGCTGGCTTGGCTGTCTTGGCTGGCTGGGTTGCCTGGATGGCTTGGCAGGCTGGCTGGCTTCTCTGGCTTGGCTGGCTGGCTGGCTTGGCTGGTTGGCTGGCTTGGCTGCCTGGGATGGCTATCAGG;SVTYPE=INV;CHR2=2;END=90483049;SVLEN=2758001 GT ./. E162291 contig4 size283 2 cov1.07 88 11 0 0 0 38 3 0 0 0 884 267 2.45318352059925 10 36.9 308 92 3.57608695652174 6 38 7 0 4 0
2 87727650 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGCCGCCCAGCCAGGCAGACAAACAAGGCCGCGAAGGCAGGCCGCCCGCGAAGCCAGCCAAGCCAGGCAAGCCAGCCAGCCAGCCAAGACAGCCAAGCCAGCCAAGCCAGCCAAGACAGCAAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCTGGCCAAGCCACTCAGCCAGCCAAGCCAGCCAGCCAGCCAAGCCGGCCAAGCCACTCAGCCAGCCAAGATGGCCAAGCCACCCAGTCAAGCCAGCTAAGCCAGCCAGGCAGCCAAGCCAGCCAAGCCAGGCAGCAAGCAAAGCCAGGCAGGCCAGCCAAGCCAGCTAGGCAGCCAAGCCAGAAAAACCAGCCAGCCAACCCAGCCAAGCCACCCAGCCAGCCAAGCCAACATCCTAAGCCCGCACGC;SVTYPE=INV;CHR2=2;END=90485383;SVLEN=2757734 GT ./. E2174853 contig1 size416 3 cov1.09 154 4 3.5 0 0 48 0 0 0 0 2620 20 20.95 7 47.4285714285714 864 3 43 3 43 9 0 23 2
2 88859483 N . <TRA> 22.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCGGTAGCTCCTGGCTATAGTTAGGGTTTTTTGTTTTGTTTCGCTTTTATGGCTGAATACTATTCCAGTGTATGGCTATATTACATTTTGTTTATTCATTCATTGGTTGGTGGCCATTTGGGTTATTTCCTCCTTTGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGT;SVTYPE=TRA;CHR2=11;END=85246640;SVLEN=0 GT ./. E4429275 contig2 size411 7 cov2.57 103 20 12.7 0 0 37 6 10 0 0 114 0 0 0 0 48 0 0 0 0 4 0 4 0
2 88859625 N . <TRA> 25.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGTGAAGTGATATT;SVTYPE=TRA;CHR2=11;END=85246640;SVLEN=0 GT ./. E3158968 contig1 size283 3 cov1.60 211 1 40 1 40 86 0 0 0 0 114 0 0 0 0 48 0 0 0 0 4 0 4 0
2 89841329 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATGATGATTCCATTCAATTGCATTCGATGATGATTCCATTCGATTCCATTCGATGATGATTCCATTCGGTTTCATTCGATGATTCTATTCAATTCCTTTCTATGATTATTCATTTCTTTTCCATTTGATGTTTCCATTTGTTTCCTTTTGATGATGATTCCATTCCATTCCATTCAATGGTGATTCCACTCATTTCCATTCGTGTTTCCCTTCGATTCCATTTGATGATGATTTCATTTGTTTCCATACGATGATTCCTTTTGATTCCAT;SVTYPE=DEL;CHR2=2;END=90373818;SVLEN=-532489 GT ./. E4128127 contig1 size271 2 cov1.11 902 1 60 1 60 327 1 0 0 0 4156 6 0 0 0 1503 5 8 1 40 4 0 3 0
2 89854806 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTGGAGTGGATTGGAGTGGAATGGAATGGAGTGGAATGGAATGGAATGGAAGGGAATGATTTTGAGAGGAATGGAGTGGAATGGAATCGAATGGAACAGAATGGAATGATTTTGAGAGGAATGGAGTGGAAAGGATTGGAATTGAGTGGAGTGGCATGGAATGGAGTCGAATAGAATGGAATGGAATGGAATGCAACGGCAAGGAATGGAATGGAAAGGAGTGGAAGGCAGTGGAGTAAAGTGGACTGCAATGACATGGAGTGCAACGGAGGGGAAAGCA;SVTYPE=INV;CHR2=2;END=89876232;SVLEN=21427 GT ./. E4133583 contig2 size282 2 cov1.07 2106 19 12.0526315789474 3 52.3333333333333 667 9 4.22222222222222 0 0 1984 46 5.43478260869565 3 43.6666666666667 622 14 0.642857142857143 0 0 15 1 7 0
2 90288349 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTGAACCTGCACTGGCCTGACCTTGGCTCTGGCCCTGCTCTGCCTTGTTCCTGGCCCTGACCCAGACCCAGACCCTTTCCTGGCTCTGCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAA;SVTYPE=TRA;CHR2=15;END=21356358;SVLEN=0 GT ./. E1984676 contig1 size214 2 cov1.41 148 0 0 0 0 61 0 0 0 0 59 2 0 0 0 17 0 0 0 0 3 0 8 0
2 90374017 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTCCATTTGCTGATGATTCCATTCGACTCCATTCAATGATTCCATTCGATGATGATTCCGTTCGATTCCATTCGATGAGGATTCCATTCGATTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAATGACCTGCAAGTCGAAGCGCTCGGGATTAAGCGTTGGTGCTTGGTCAGGTTGTAATTGTTGTGAGGTGTGAGGGTTCAGGAGTACAA;SVTYPE=DEL;CHR2=2;END=90393270;SVLEN=-19253 GT ./. E934825 contig8 size246 2 cov1.23 911 30 5.33333333333333 4 40 334 7 0 0 0 3383 23 0 0 0 1251 8 0 0 0 6 0 6 0
2 90393031 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCGTTTTCTTTCTATGATGATTCCATTCGAGTCCATTTGATGATTCTGTTCAATTCCATTCGATGATGATTCCTCTCAAATCCATTTGATGATTCCATTCGAGTACATTCGATTATTCCATTTGATTTTATTCGATGATGATTCCATTCGATTCCATTCGATGATGATTCCATTCGTTTTCATTCGATGACTCTGTTCAATTCCTTTCTATGATTCTTCAATTTTTTTCTATTTGTTAATTCCTTGTGTTTCTATTTGATTTTGATTCTTTTCGTTGTCT;SVTYPE=DEL;CHR2=2;END=91595163;SVLEN=-1202132 GT ./. E1880950 contig1 size284 2 cov1.06 2934 734 0 0 0 1373 441 0 0 0 420 9 3.88888888888889 1 35 148 3 2 0 0 5 0 4 0
2 91595167 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTATTTCATTCCATGATTATTCCATTCGTTTTCATTCGATTATTCTATTCAATTCCTTTCTATGATTATTCAATTCTTTTCCATTTGATGATTCCATGTGATTCCATTTGATGATGATTCCATTCGTTTGCATTCGATGATGATTCCATTCGGTTTCATTCGATGATTCTATTCAATTCCTTTCTATGATTATTCAATTCTTTTCCATTTGATGATTCCATGTGATTCCATTTGATGATGATTCCATTCGTTTGCATTCGATTATGATTCCATTCAGGTCCA;SVTYPE=DEL;CHR2=2;END=91614186;SVLEN=-19019 GT ./. E143869 contig1 size283 2 cov1.07 439 2 0 0 0 158 0 0 0 0 1647 15 0 0 0 652 9 0 0 0 6 0 5 0
2 91977417 N . <TRA> 1 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTGGACTCTTATAACAAAATAACATAAACTGGGTGACTAAAAAACAACAGATATTTCTTTTTTCATACTTCTTGAGGCTGTAAGATCTCAGGTCAAGATGCTCGCAAATTCAGTGTTGATGAGAGCCCATTTCATGGTTCATAGATGGTGCCTTCTCACACTCGGCTAATTTTTTGTATTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCCAACTCCTGACTTCAGGTGATCTACCCACTTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGCGCCTGGGCAGCTCTTTGACATATTTCAAGATGGCTACTCGGAAGACTGGAGATAGCATCTTCTACAAGAATAGCTGAAAAGCTCATGAGTCCTTTAGGTATCCCCCAGACCAGTCAGAACAGACACATAGTAATTTGCGAGTAACATCTTCTCTTGTTCCTTTGGACCATGGACCAGTGTTCCTCACTGGGAACGTGGGCTCCTGACACTTCAAAACTGCCAATTTGCTGGGGCAAAGGCAAGTTAAAAATGTCATAAAGTTTTCAAGTTGTCTTTTTCTTGAGTCTGCTTTCACTCGGTTGTTGTAATCTTTTGACTATTTTCCACAGTTTTGGCAAAGTTTATTCGGACAGTTTCTCTTAGTTGTGTAATGTTTCTGTGGGGAAATGAAAGATTGCAGCTGTCTCCACTGCCATTTTGCTGATGCTCCTCTTTTGTCAATTTTTGCTTCATGTTATTATGCTTTGTTATTAGTTCATGTATTAGTTTTCTAGGGCTGCCATAACCAAGTAACACAAACTGGGTGCCATGAACAACATACATTTATAGTCTTATAGTCCTGGAAGCTAAAAGTCTGAGATTGAGGTGTCAGCAGGGATGGTCCCTTCCAGGGCTA;SVTYPE=TRA;CHR2=9;END=70157593;SVLEN=0 GT ./. E4208783 contig1 size902 125 cov20.93 440 39 0.153846153846154 0 0 125 0 0 0 0 383 21 1.14285714285714 0 0 123 0 0 0 0 15 0 11 1
2 91980792 N . <INV> 6 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTCTCTCCATTAAGCATGCCATTAACTGAGTAAAAGAATCAAGCTGCAATTATGTAAACTACGTTTTCTAAAACCATAAAGAAAAGAAGAAATAAAAAGGTATTTGGGAAAAAAATCCAAAGGTACAGTCAACTACACAAAAAAAGCTTAGTCTCATTAATCATTATGAAAATGCAAATGGTAACTGAAAGAAGATAAAACTACAATTCAAAGAGAAAGCCTAAAATTTCAACCCCCCAAAAAGTCTGGGTTTTGGAGATCTGGGATGGAATAGGGTTCCTAACCTGACAACAATGAAAGAACCAAACTAACCTCAAAGTCATGACTTTATTTTTATAGCAACGAGGTTGCCAAGAACTGAGTCAAAATGTGAGGGAAAACAAGCACCTGCAAGGAGAAAGAGGACAGATGCACTTACATAGGACAGATGCAAATAGACACCACTATGACAAGTAAAGCTGGAATAATCAATAAATTCCTAAAGACAAAGTGGGGCTGGTCAGATTGGGAGACGGCTGACAGCTGCAGAAGTTGGGAAAGATCCATCATCTTGAAAACTTTTTCTCCACAAACCCACTGTGATCTCTCAAGCAATTGGTAAGGAATCCAAGAGAGTCTGTATATGACACAGATCAGGGAGAGCAGAACACTTGGGAGGTGACCAGGTCTCGGGGGTCGAGCCCTTATGAATCGGATTAGTGCCTTTATAAAAGAAGCTCAATGGAGTTCTTGTGTAAATTTCTATTTTATGCTTTCTCTATGCATATGCAAATTAATCTATCCACTTCTCTATCTCTATGTAGTAACATATGAAAATCAGGCCTCTATTCTTCTAATGGACATACACATGTTTGCGTATAGAATATCAGACTCTTTATAG;SVTYPE=INV;CHR2=2;END=92240330;SVLEN=259537 GT ./. E1130050 contig1 size883 38 cov6.50 483 20 13 5 40 148 0 0 0 0 348 27 5.96296296296296 1 40 120 1 0 0 0 21 0 24 0
2 91995259 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTTTTCAGAACGAATGACGTTGGGATCAGAAAGCCATCATTCTAATTGATGGTTCCAAGACTACACGGGCTCACACTCCCAAGAACAAAAGTAAATCATCGCAAAGGTGCTTCCTGATAATTTTAGAGAATGGAGAATTACTGTAACATCTTTCTGATTTTAGGAGAGGTAGCAGTTCCCTGTTTAGCCTAAACGCTATTTTTTTTTTAAAGCTCAGCCAAGAGACTCCATTATAATTTTCAAATGTGTGTAACTTAAATTCTCATATGAAATGCCACTATGCTTAAATTAGTCAAAACATTTTCCCCATCTACAACTCTATCTTGTCATTGCAATCATTTTCACAAAAGTGACTGCAGCTCACAGACCCTAAAAGGAGAAAATCCAGGGTAGGTTATCTGATCTAGTTAGTTTCGAAGACAGGATCTAGAGATTATTTAATATGAAATAGGTCACCTGAAATGAAGTGTTTACTGAAAACAGCTTGGATCAGCCCAGTTTTCTACCACTGAACCATGCATTTGGTTTAAAAAACACAAAGAAAGAGCAATGAGGGATAGAAAAGGTTAGTGATGGAGACACCAGCGATGCATTTTGCAACAAACAATGTGAAAATTTTACGGATTGGTTCAGCTAACTTACTACAGTTTACATTCCTCTCAGGTGGGAGAATTGTTG;SVTYPE=INV;CHR2=2;END=92253168;SVLEN=257910 GT ./. E2922456 contig4 size679 27 cov6.00 452 27 0 0 0 132 0 0 0 0 247 39 1.69230769230769 0 0 67 2 32.5 1 40 6 0 6 0
2 92278132 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACCCTCTTTTTGTAATATTTGGAAGTGGACATTTGCAGCGCTTTGAGGCCTATGATGTTTTAATGATTCGGCGACCACCGAGATCTACCCTCTTTCCCTACACGACGCTCTTCCGATCTTGTGTATTCAACTAACAGAGATGAACCTTTCTTTTTACAGAGCAGTTGTGAAACCCTCTTTTTGTGGAATCTGACAGTGGATATTTGGATCGCTTTGAGGATTTCGTTGGAAACGGGATTACATATAAAATCTAGAGAGAAGCATTCTCAG;SVTYPE=DEL;CHR2=2;END=92321050;SVLEN=-42918 GT ./. E487946 contig1 size272 2 cov1.11 315 735 0.0557823129251701 1 37 141 255 0.450980392156863 2 57.5 56037 304 4.9375 12 33 20598 78 4.87179487179487 2 35 3 0 4 0
2 92313236 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTGAGTCAACTCACGGAGTTGAAACTTGGTTTTGATACAGCAGTTTTGAAACCCTCTTTTTGTTAGAATCTTCAAGTGGATATTTGGATAGCTTTGAGGCTTTCATTGGAAACGGGAATATCTACACATAAGAACTAGACAGAAGCATTCTCAGAAACTTATTTGTGATGTGCGCCCTCAACTAACAGTGTTGAAGCATTCTTTTGATAGAGCAGTTTTGAAACACTCTTTTTGTAATATCTGCAAGTGGATATTTGGATAGCTTTGAGGATGTTCGGAAGAG;SVTYPE=DUP;CHR2=2;END=132998485;SVLEN=40685249 GT ./. E1988922 contig11 size284 2 cov1.06 64396 590 12.1915254237288 113 39.5486725663717 21840 227 13.0969162995595 48 39.4791666666667 4640 172 3.92441860465116 6 47.1666666666667 1334 45 2.84444444444444 1 33 11 0 5 0
2 98129524 N . <TRA> 5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAAGTATATATTAAAGAATAGCATTGTTTACATAAGGCCTTTGAACTAAAATAAAATATTTCAAGATTTATTATAAATAATTGTAGCTATAAATGCCATGATTCTTTTTTTTATTTTTTATTTTTATTTTTTTTTTGATACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATATCGGCTCACTGCACGCC;SVTYPE=TRA;CHR2=5;END=171373814;SVLEN=0 GT ./. E4405004 contig2 size202 2 cov1.50 760 529 5.49338374291115 4 43.75 252 171 4.60818713450292 0 0 65 4 31 2 60 42 1 60 1 60 14 0 4 0
2 110347664 N . <TRA> 30.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATCCACACAGTATTCAAGCTTTTTTAGTAACCATGTTTCTTTTAAAAATCTGAAATTAGTGCTAGTGAGTTCTTATTGAGACAATATGAAGCCCTTTGCACTGTAAATATTTTATATTTTTGGAGAGACATTTGATGATATCTAAGAGTAAAAATGAATATATATGTGTGTGTATATATATACACACACATATATGTGTAATATATGTGTGTGTATATATATACACACACATATATGTGTATGTGTGTATATATACACGTGTGTGTATATATACACACACACACATATATGTGTATGTGTGTGTATATATACACACACACATATATATGGTGTATATATATACCATCTTCAACTCAGTGAACCTGTGTTTTAAAATGTATCGTAAAGAAGGAATAGAAGAGGGGAAGAAAAGCATTATTTATATAGCATTGTTAATTTTTTTCAAATTAAGAACATGATAATATCTACAAGGATAAATTCATTCCCAAATAGTTAATTGTATGTAACATACAACTCGATGTAGTGTATCATACCTCAGCCTCTTTTTGGAGTGAATCTGTTACTCATTCATGAAGGAAAGAACTCTTACCAACGGGTGGTCAAGTAGAGACTGGTGATCTCCTGCGATGTTAGAGGGGTAAGGTGTAGGGGCTCTGTTAAGAGGAGGTGTTCACATATTTTCTTACTATACTTAACAC;SVTYPE=TRA;CHR2=6;END=64384220;SVLEN=0 GT ./. E612490 contig1 size700 25 cov5.39 142 0 0 0 0 27 0 0 0 0 147 40 52.35 37 56 35 3 41.3333333333333 2 60 17 0 4 0
2 114152908 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACCGCGATCCACACTCTTCCCCCACACGACGCTCTTCCGCTCTGCCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCCCCCCCGCTGGGAGGGGTGGCCAGCGGCTCGGTGCGCCCGCGCCACGGCGACGCCCGGCGGAGC;SVTYPE=TRA;CHR2=19;END=50644327;SVLEN=0 GT ./. E1158954 contig12 size286 2 cov1.06 113 1 0 0 0 44 1 0 0 0 118 0 0 0 0 46 0 0 0 0 5 0 5 0
2 114822093 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGTGCCACTGCACTTCAGCCGGGGTGACAGAGCAAGATTCCATCCTCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAGAAAGAAAAAAAAAAAAAAGAAAGAAAAAAAGAAGAGAAAAAGAAAAAGAGGAAAAAAGAAAGAAAGAAAGAAAAAAAAAAAAAAGGAAGGAAAGAAAGGAAGAAAGAAAGAAAAAGAGAGAAAGAAGAAAGAAGAAAAGGAAAGAAAGAAAGAGA;SVTYPE=TRA;CHR2=1;END=148795148;SVLEN=0 GT ./. E816213 contig1 size286 2 cov1.06 121 5 32 3 53.3333333333333 43 1 40 1 40 199 0 0 0 0 63 0 0 0 0 3 0 5 0
2 116246477 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAATGCTAGATGTTAAGCACAGCCTAATGAGTGCTAGTTATAATTTT;SVTYPE=TRA;CHR2=11;END=58171838;SVLEN=0 GT ./. E2689772 contig2 size153 2 cov1.97 128 23 6.78260869565217 4 39 44 7 0 0 0 109 80 44.6125 59 59.6779661016949 34 26 44.0384615384615 19 60 7 0 56 2
2 122339851 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAACGAGAGAAAGACAGAGAGAGCGGGAGAGAGAGAGAGAGAGAAAGAGAAAGGGAGGGAGAGAGACAGAGAGAGACAGACAGATAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGCACAGAGAGAGAGACAGAGAGACACAGAAAGAGAAAGAAAGAGAGAGGCAGACAGACAGAGAAAGACAGAGACAGAGAGAGAGAGAGGAACAGACAGAAAGAGAGAGGGACAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGA;SVTYPE=DEL;CHR2=2;END=133028333;SVLEN=-10688482 GT ./. E244107 contig1 size269 2 cov1.12 135 3 0 0 0 59 1 0 0 0 38701 184 13.4239130434783 40 40.05 12996 41 8.41463414634146 4 36 27 1 3 0
2 122339853 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCCCTGTCTGTTTCTCTCTCTCTCTTTCTGTCTGTTTCTGTCTCTCTCTGTCTGTCTCTGTCTTTCTCTGGTTGTCTCTTTCTCTGTCTTTCTGTCTCTCTCTCTCTTTTTCTGTGTCTCTCTGTCGGTCTCTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTCTGTCTTCCTCTCTTTCTCTGCCTGCCTGTCTGTCTCTCCCTCCCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTTTCCGTCGGTTTGTCTCTGTGTCTCTCTGTCCCTTTCTCCCCGTTTTTGGCTTTCTCTTTTGTTTTCTCTGCCTGCTCTCCCCTCCCTT;SVTYPE=DEL;CHR2=2;END=133028404;SVLEN=-10688551 GT ./. E4365583 contig10 size388 3 cov1.17 146 14 0.0714285714285714 0 0 65 4 0 0 0 148215 3189 7.68109125117592 294 41.8571428571429 48951 1048 7.50286259541985 85 40.6 27 1 3 0
2 122339890 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCCCTGTCTGTTTCTCTCTCTCTCTTTCTGTCTGTTTCTGTCTCTCTCTGTCTGTCTCTGTCTTTCTCTGGTTGTCTCTTTCTCTGTCTTTCTGTCTCTCTCTCTCTTTTTCTGTGTCTCTCTGTCGGTCTCTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTCTGTCTTCCTCTCTTTCTCTGCCTGCCTGTCTGTCTCTCCCTCCCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTTTCCGTCGGTTTGTCTCTGTGTCTCTCTGTCCCTTTCTCCCCGTTTTTGGCTTTCTCTTTTGTTTTCTCTGCCTGCTCTCCCCTCCCTT;SVTYPE=DEL;CHR2=2;END=133028530;SVLEN=-10688640 GT ./. E4365583 contig10 size388 3 cov1.17 224 6 10 1 60 86 2 0 0 0 66546 149 9.74496644295302 18 41.1111111111111 21832 52 11.1730769230769 7 38 31 1 4 0
2 122339916 N . <DEL> 30 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAAAGAAACAAACAGAGAGAGAGAGAGAGAAAGAGAAAGGGAGGGAGAGAAAGAAACAGAAAGGGAGGGAGAGAGAGAGAGAGAGACAGACGGGGAGAGAAAGAGAGTAAGACAGAAGACAGACACAGTGAGACAGGCAGAGAGGGAGAGAGAGAGACAAAGACAGAGACAGAGACAGAGAGAAAGAAAGAGACAGACAGACAGAGAAAGAGACACAGAGAGAAAGACAGAGACGAACAGAGAGAAACAGACAGAGAGAAGGCCCTAGCCCAGTAGCAATA;SVTYPE=DEL;CHR2=2;END=133029148;SVLEN=-10689232 GT ./. E3839026 contig8 size283 2 cov1.07 131 2 16.5 1 33 62 0 0 0 0 19770 5184 34.1140046296296 2967 47.479271991911 6672 1662 33.9620938628159 934 47.4925053533191 25 1 3 0
2 128127051 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATGGACACTCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAACAAAAACAAAATTAGCCGGGCATAGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGTAGGCAGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAGTATACATGCACACTAGGAGCAAAACTATGGAAACTAATGTGAAAATATGGAAGAAACAAATAACTCAT;SVTYPE=TRA;CHR2=6;END=18373279;SVLEN=0 GT ./. E26205 contig1 size300 4 cov2.01 95 1 0 0 0 35 0 0 0 0 118 11 49.9090909090909 11 49.9090909090909 45 1 2 0 0 0 0 0 0
2 134821993 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTTCCGATCTCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGATAATGGCGGTTTTGTGGAATAGAAAAGGGGGAAAGAGATCGGAAGA;SVTYPE=TRA;CHR2=19;END=50644221;SVLEN=0 GT ./. E725546 contig2 size162 2 cov1.86 103 1 0 0 0 35 0 0 0 0 92 2 23 1 46 59 1 2 0 0 4 0 5 0
2 135364636 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTGCAGACGTGTGCCCTTCCGATCAAGAGGACGGCCCCCGAGAACTGTGGTGGGGAAAAGGACAGCCGCCGAGAACTGTGCTGGTGAAAAGGACAGACCCCGAGAATTGTGCTGGTGAAAAGGACAGACCCCGAGAACTGTGCTGGTGAAAAGGAGAAGAGCCGCGAACAGGGGTGGTGGAGAGGACGGGAGGCGCGCAGTATCGTGGAGAAAAGGAGGACAGACCCCGAGAACTGTGCTGGTGAAGAGGGCAGGAGCGGAGCGGAGTG;SVTYPE=DEL;CHR2=2;END=135366321;SVLEN=-1685 GT ./. E465885 contig2 size271 2 cov1.11 184 3 2.33333333333333 0 0 77 1 0 0 0 174 2 0 0 0 66 1 0 0 0 8 0 5 0
2 135364672 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTGCAGACGTGTGCCCTTCCGATCAAGAGGACGGCCCCCGAGAACTGTGGTGGGGAAAAGGACAGCCGCCGAGAACTGTGCTGGTGAAAAGGACAGACCCCGAGAATTGTGCTGGTGAAAAGGACAGACCCCGAGAACTGTGCTGGTGAAAAGGAGAAGAGCCGCGAACAGGGGTGGTGGAGAGGACGGGAGGCGCGCAGTATCGTGGAGAAAAGGAGGACAGACCCCGAGAACTGTGCTGGTGAAGAGGGCAGGAGCGGAGCGGAGTG;SVTYPE=DEL;CHR2=2;END=135366321;SVLEN=-1649 GT ./. E465885 contig2 size271 2 cov1.11 221 1 0 0 0 105 0 0 0 0 174 2 0 0 0 66 1 0 0 0 8 0 5 0
2 141014019 N . <TRA> 24 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTTCTTTCTTTTTTTCTTTCTTTCTTTCTTTTTCTTTTTTTTTTTTTTTTGTTTCTTGTTTTTTTTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAGAGTCTTGCTTTGTCGTCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCT;SVTYPE=TRA;CHR2=11;END=126984683;SVLEN=0 GT ./. E1512686 contig1 size264 2 cov1.14 166 5 49.2 4 55 72 0 0 0 0 105 19 49.6315789473684 17 55.2941176470588 32 7 51.8571428571429 6 60 3 0 6 0
2 161504861 N . <TRA> 5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCATGTGGAGTGTCTGGAGCGGCTGCTGCCATCACACCAGCTGCAGCAGGAAGGTGCCGGCAGTGGTGGCAGGAGTGGCTGCAGGAGCAGCAATGGCGGTGATGAGATCCCCGTGCCCCACGGCCCCGAGGCAGCCGACTGCACCACCCCCACCCTCACACAGCCGGGCAGGACCCACTCCCAGGCCCAGGGCCTCCACCACGGCCTCAACCTCACTCCCCACTGTGTCTCGGGAACCCCTGAGCACTTGGTGGAAGGCACA;SVTYPE=TRA;CHR2=3;END=74801651;SVLEN=0 GT ./. E84807 contig1 size263 2 cov1.15 202 1 60 1 60 70 0 0 0 0 143 18 3.55555555555556 0 0 30 2 0 0 0 3 0 4 0
2 180884405 N . <TRA> 11 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTATGAAAATATCACAAGGTGTACACCCACTGTGATATTAGAAGTAATAACTACCTAGGATATTATGAATATCACAGTGGGTGTACACACATGGTGTGTGTATACACACATGGTATATGCCCACTGTGATATTAAGAGGTATAGCTTCCTAAACTATTATGAATAATATGACAAAGTGTACGCGATGTATGTACACCCATTGT;SVTYPE=TRA;CHR2=11;END=17076525;SVLEN=0 GT ./. E3567396 contig2 size204 2 cov1.48 228 10 26.4 4 37.5 63 2 8 0 0 124 4 0 0 0 53 0 0 0 0 4 0 17 1
2 203516734 N . <TRA> 33.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGCTCTTCCGATCTTGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGTGGACAAATGGTTTGAGCCCAGGAGGCAGAGGTTGTAGTGAGCCGAGATCGTACCATTGCACTCCAGCCTGGGCAACAAAAGTGAAACTCTGTCTAAAGAAAAAGATCGGAAGAGCAC;SVTYPE=TRA;CHR2=14;END=21044269;SVLEN=0 GT ./. E682527 contig1 size166 2 cov1.82 99 0 0 0 0 35 0 0 0 0 141 15 56.8666666666667 15 56.8666666666667 45 1 60 1 60 1 0 0 1
2 208493237 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGCGGGTGGATTACAAGGTCAGAAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATGTCTACTAAAAATACTAAAAATTAGCCGGGCATGGTGGTGGACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCTGAGATTGCACCACTGCAGCCTGGACCTCCTGGGTTCAGGCATCCTCCCACCTCAGCCTCCTAAGTAGCTGGGACTACAGGTGTGTGCCACCACACCCAGCTAATTTTATTTTTTGTATAGAGAGAGTCTTGACA;SVTYPE=DEL;CHR2=2;END=208493557;SVLEN=-320 GT ./. E1692901 contig1 size316 6 cov2.87 74 5 28.2 2 58.5 23 0 0 0 0 88 9 50 8 53.25 31 0 0 0 0 454 205 457 187
2 219112340 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTATGATAGCTTACAGTTTGGAATTAATAAGCTTGTTCACACTGCACCCAATGCCACTGGAATGTCTCCTTTGTGAAATGTAATTTAATTCACCTCAGTGGTAAAGGTGAACCTGTTTATTGGTGATGAATCTGTTGATTTACCAAATTTCATTAAATCTAAACTATACACTTTTTTCTTTTTTCTTTCTCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCTTCCCAGGCTCAAACAATTCTCGTGCCTCAGCTTCCCAAGTAGCTGGGACCACAGGCGTGTGCCACTGCGCCCAGCCAGCTATACCATTTTTTTCAAGTTTTTGTCTTTGAAGCTGGGATGCATCTT;SVTYPE=DEL;CHR2=2;END=219112777;SVLEN=-437 GT ./. E3568025 contig2 size374 12 cov4.84 122 10 49 9 54.4444444444444 43 0 0 0 0 128 13 52.2307692307692 13 52.2307692307692 43 0 0 0 0 560 217 554 235
20 7543461 N . <TRA> 47.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGCGCCACTGCATTCCAGCCTGGGCAACCGAGGGAGACTCTGTCTCAAGAAGAAAAAAAAAAGAAATTTTTGCATCTATGCTTATGATACATATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTGTATAAGAAAATAAAATTGGGAGTTGAAGGGCGCTGTATTTCTATGTGTATCTGCCCATGTGTGACCTCAATGAATGGTCTGCACAATATTGAAACCTGTACCTCTCTCAACCTACTCTT;SVTYPE=TRA;CHR2=8;END=65651083;SVLEN=0 GT ./. E3119026 contig1 size268 2 cov1.13 127 12 55.75 12 55.75 40 1 60 1 60 136 0 0 0 0 38 1 60 1 60 0 0 0 0
20 13160730 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTAGTCTATGGACACAGCGTTGGCCATTCTGTATTCAGAATAAACAGCCTGCCCTTCTCTGAAGTCATCACTCATCCAGACTGTAGGTTGGCCTCCCCACCTCATTCTGAATCCTGATTCTAGGGGTCTCTAGTCAAAATTTGCATTTACAAAGCAACATAAAAAGTAAATTTCTTGGAAATTAAAGAGAAACACACATGGATTATCTACTAAAAACATATAATATTAAGAATTTTTACCAAAAAATTTAATAGGTTGAGAGTAAAATATTCTTAGATAGGAAATGAGAATTTTACAAATAATTCTCTCCAAATTATAAACTTAATAAAAACAAAACTATTTTGAAAAATAACAATGAACAATGGCAGATTATCAAGCAATAGCACAAGCAGTTTTCTTTTATAAGA;SVTYPE=DEL;CHR2=20;END=13164100;SVLEN=-3370 GT ./. E2230849 contig3 size410 36 cov13.26 142 41 59.5609756097561 41 59.5609756097561 36 0 0 0 0 91 46 58.6521739130435 46 58.6521739130435 62 0 0 0 0 22 0 29 0
20 14962958 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGTATCTGGTGGAAGAAATTTCTAAGCAGCAAAACATTCAAGAGGTGACTTGGGTACTCTTAAATGCATTCAGTTTCAGAAGGGAAATGGAACATAAAATTTGGAAAATTTGCAGCCTAACAGTGCCAACGATGGGGAATGAAAAATCAGTCTCTTGCTATCCTTTCCCGTGGTGAGCTTTCAGCTGCCACACTTTCTCATTCTCTTCCCTCAAGCTGGGCCAGATCACATGGGCAGGCAGAGGAAGGAAGACTTGATAAAAGGTGTAATTT;SVTYPE=DEL;CHR2=20;END=15013948;SVLEN=-50990 GT ./. E3805528 contig1 size274 18 cov9.92 150 23 51.8260869565217 19 60 50 0 0 0 0 117 26 59.6538461538462 26 59.6538461538462 55 0 0 0 0 18 0 15 0
20 14988825 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAAAAGAACTGGCTTTCTTTCTATGAAAATAAGTTGGTGAATTAACGTGCTATTAGTTCTTTATTAAAATAAAACTTTTGATATGTAGCCTATTTTACTGACCAATTATAAGATTATTTAAAATAAGAATACCTGTATGTTTTTAGAACAGAGAAAGTGGGAACAATGGAGAATGAAGTCACATATATTTTTTAATCTTGTTTTTACAGTAGGTGGTTTTAAGTCCTACCATATGATGGCTGGTATTTTCGAGAATTGTTTCTTTCTATCAGTAGAAAATGTGTCCCTTCCAACGTTCCATTACTTGAATGTCTGTGTTAACCTAGAAAGACAGTAGGAGACTAAAACTTGTAATATTTTCATTACTTGAAAGATTAAATTATGTTTTATTGTATGAGTTCTTTAGTATTTTCCCTGGATAGGCCTTTTCTTCCCATCACACAAACAATAGAGACAACTTTATGAAATATGAGAGAATTGTATTTTAATACTCTGAGGTAGGATCAAGCTACTTTCATCAGTTGATACAATTTTCCCCTAAAGAAATTCTAGCTGTGAGGGCCAATGGACTTGGGTTACATATAAGAATTATATATACATTATCATTTGCTTTTGAAAGTAATTATTCTAAGGCTAAGTTAGGTTTGAATTTGATTCTGAACAATGATGATGCATTTGAACTGTTAGGGTAATTAGGACTATATCCCATTCACCCACACACTCTTTTTCATGTGTAGTCCTTTAAACTGCACAGCCTTTGAAGGATGGTTAGTTTGTATCTGGGGTTTGTGTTTTGTTTTTT;SVTYPE=DEL;CHR2=20;END=15108818;SVLEN=-119993 GT ./. E2367966 contig1 size803 25 cov4.70 149 21 51.0952380952381 21 51.0952380952381 52 0 0 0 0 158 18 59.5555555555556 18 59.5555555555556 45 0 0 0 0 11 0 6 0
20 15000624 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATTGTGTAGGTACTGATATAGAAAGAGAGAAAGCAAATTTTTACGAACATTTTATTGATGAAATTAAACATAATAATAATTGAATACTTAAAATATTAACTAGTAAATAAGAAGAAAATTTATTCTAGTAATGAAAAGGATGAAATGCTTAAAAATGGCTACAGTGATAAATTACATTATGTATATTTTACCACAATTAAAAATGCATGTCTTCATACTAAAACAGGTATCTTAAAATGTTTACCTCTGCTGCCAACGATGGGGAATGAAAAATCAGTCTCTTGCTATCCTTTCCCGTGGTGAGCTTTCAGCTGCCACACTTTCTCATTCTCTTCCCTCAAGCTGGGCCAGATCACATGGGCAGGCAGAGGAAGGAAGACTTGATAAAAGGTGTAATTTAGTCCTGCTGCTGCTTGTCGCAGTATATGCTTTGTCCATTTTATCTGCTTATGACCCAGTTATTTGCTTTTTCTCTTTATACACTTGAGGTAACCTTGGAAATGGGCTCTAAAATCTGAACTGAAATGAAATGGTCTTCATGTACCCCCAGTGGTGTGATGGTTTGTGCTTCTAATAAAATAATTTAAGCTAAGCTAAGCGTGCATCCACTATAACTCTCTAACTTGTGAAATCTGTAGCTTCAGAATCATCATTCATCATTTTTGTCTTCCAAGACACTAATGGAAATTAAAATAAACAAACCTGTCCATGTTAGAAAGAGAAAAGATCCTCTACAGTGACAAGTTTCACACAAATTGCAATA;SVTYPE=DEL;CHR2=20;END=15013842;SVLEN=-13218 GT ./. E4382603 contig1 size764 31 cov6.13 101 28 58.7857142857143 28 58.7857142857143 54 0 0 0 0 77 26 57.2307692307692 26 57.2307692307692 50 0 0 0 0 12 0 11 0
20 30964319 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCTCTGCCTCCCGGGTTGAAGTGATCCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTATATGCGTGAGCCACCACACCCGACTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCCTTACCTCAGGTGATATAATATACAACAGATATAATATGTCTATTATATATTATATATAATGTTATATAGATATCTATATTATATATAATATATTAATAGATATATTA;SVTYPE=DEL;CHR2=20;END=30964827;SVLEN=-508 GT ./. E3807937 contig1 size256 6 cov3.54 134 5 22 2 48 40 0 0 0 0 41 5 55.2 5 55.2 12 0 0 0 0 523 168 504 156
20 33289750 N . <TRA> 51 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCCGATCTGCTAGTTTTTTAAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAATTCCTGGCCTCAAGGGATCCGCCAACCTCGGCCTCCCAAAGTGTTGGGATTATGGCTGTGAGCCACCACACCTGGCTGACATACTTCTCAGATCGGAAG;SVTYPE=TRA;CHR2=1;END=200077033;SVLEN=0 GT ./. E3286114 contig1 size161 2 cov1.88 131 6 44.5 5 53.4 36 0 0 0 0 161 7 49.8571428571429 7 49.8571428571429 39 0 0 0 0 2 1 0 0
20 36552531 N . <TRA> 3 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTGTCTCTGCAAATAATAATAAACAGCCAAGTGTGTTAATACACATTTGTGGTCCCATCTGCTCAGGAGGCTGAGGCAGGAGAATTGCCTGAGCCTGAGTGGTCAAGGCTAGAGTGAGCTGTGATTATGCATTGCATTCCAGCCCAGGGGACACAGTGAGACCCTGTTTAAAGAAAAAAACAAACAAAAACTAAAAATTAACTAGGAGTAGTGGCATGCACCTGTACTCCCAGCTACTTCAGAAGCTGAAGTTAGAAAAGCATTTGAGCCTGAGAGTTTGAGTCTGCAGTGAACCATAATTGAGCTACTGAACTCCAGTCTGTGTGA;SVTYPE=TRA;CHR2=12;END=70997911;SVLEN=0 GT ./. E3912929 contig3 size328 3 cov1.38 310 19 0 0 0 99 3 0 0 0 127 57 1.89473684210526 0 0 41 12 3.16666666666667 0 0 7 0 3 0
20 37274467 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGGAGGAGGAGGGGAAGATGCAGGAGGAGGAAGAGAAGATGCAGGAGCAGGAGGAGAAGATGTGGGAGCAGGAAGCTCCACTCTCAGGGTCCCCTACTCCAAGGTCCACTTTAGGGGCTGAATGCCCCCTCCTCATTCCACCAAACCAGTGCTTCCGTCCCGTGTCCAAACAAATGCATATTTCCAAGCCCTGTGGGACGCTGGGCCAGGGAAGAGGCCACGATGACCCTGGAGAGGGCTCTGCCTCTCGCCCCCAGAAGTCCTATCCCCCTGCCACTAGTTCAATATGAATCTGTACCAACTAAAAGCAATATTTTAGTCAATATTTCCTGAGGTGAATTGATTTATATTGTTTTCTTCTATTAAAAAAAAAACACATTCCCATGTGTTTCCTTTTCCTTCATGGTTTTGAAAATATGGAATCAAGTTTTCTTTTTTTTTCTTTTTTTTTGAGACGGAGTCTCACTCT;SVTYPE=DEL;CHR2=20;END=37274668;SVLEN=-201 GT ./. E2267574 contig1 size471 19 cov6.09 134 19 39.1578947368421 13 49.6153846153846 41 0 0 0 0 165 25 56.44 24 58.2083333333333 43 0 0 0 0 674 191 643 192
20 39841385 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTAGATGAAAATTACATTACATTTTTATATCATCATGGGTAATACTGACAACCTTTTTTTTTTCCTTTGGAGATGGAGTTTTAGTGAGTCACTCAGGCTGAAGGGCAGTGGTGTGAGCTGTGCTCACTGCAAGCTCTGCTTCCCATGTTCAAGCAATTCTCCAGTCTCAGCCACCAGAGTAGCTGGGATTACAGTCATGCACCAACATGTATAGCTAACTTTTGTATTTTTAGTAGAGATAGGGTTTTGCCATGTTGGCCAGGCTAGTCTCAAACTTCTGATCTCAAGTGATCCACACACTTTGGCCTCCCAAAGTCCT;SVTYPE=TRA;CHR2=10;END=121793492;SVLEN=0 GT ./. E4090593 contig1 size319 3 cov1.42 297 20 3 1 60 96 5 0 0 0 66 38 0 0 0 30 10 0 0 0 4 0 4 0
20 50072530 N . <TRA> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCAGCCATCTCACCCATTCACCCATCCACTCATCCATTCACCTATCCACCCACCCATCCACTCATCCATCCACCCATCCATTCATCCATTTACCCACCCATTTACCTACCCATCCATTCACCCACGCTTCTACCTACCTGCCCTTCCATCCACCTACCCAACCACCCATCCATATACCCACCCACCCACCCATGCACCCATCCATTCACCTGTCCACCCATCCATCCACCCATCTATTCATCCATTCACCCACCCATTTACTTACCCATCCATTCAC;SVTYPE=TRA;CHR2=13;END=114078987;SVLEN=0 GT ./. E2344867 contig1 size278 2 cov1.09 133 0 0 0 0 40 0 0 0 0 160 38 49.1842105263158 32 57.0625 60 10 47.8 8 58.875 4 0 3 0
20 51231055 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTCATATTTCATGTCTAAAATTTTAGTGAATAGAAATATTCATGAGACTCTGAACTCCAGTCATAATAATAACTGGTTGTTATGCAACATTACTTGTTCAAGGTTCCCTTCCCTTCCTTTCCCTTCCCTCCCCTCCCCTCCCCTCCCCTTCTCTCCCCCCCCCCCCCCCCCCGCCCCCCCCCTCCCCCCCCTCCCCTGCCCTTCCTTTCTTCCCGGCGGGTC;SVTYPE=TRA;CHR2=7;END=41497684;SVLEN=0 GT ./. E497245 contig1 size224 2 cov1.35 123 0 0 0 0 30 0 0 0 0 163 78 45.6282051282051 56 59.4107142857143 47 22 49.2272727272727 18 60 4 0 5 0
20 57930541 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCCCTCTCTCCCTCTCCCCCTCCCCCCCTCCCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCTCCCCCTCCCTCCCCCTCTCTCTCTCCCCCTCTCCCCCTCTCCCCCTCTCCCTCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCTCTCCCCCCCGCCCCCGCCCTCCCTCCCCTCCCCCCCCGCCCCCCTCCCCCCCCCCCTCCCTCCCCCCCCCACTCCCCTTCCCCCCCCCCCCACCTCCCCCCCTCCCTCCCCCCCCTTCTC;SVTYPE=TRA;CHR2=7;END=112880364;SVLEN=0 GT ./. E2104843 contig7 size273 2 cov1.11 74 1 0 0 0 31 0 0 0 0 257 0 0 0 0 69 2 40 2 40 3 0 4 0
20 58889879 N . <TRA> 18 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCTCCCCTCCACCCATCCCTCCACCCACCCTCCCCTCCATCCTCCCTCCCCTCCGTCCACCCATCCATCCATCCATCCCCCCCCCCTCCCATCCACCCTCCCTCCCATCCATCCATCCTCCCATTCATCTATCCATCCATCCCTCGATCCTCCCATCCATCCATCCTCCCATCCATCCATCCATCCTCCCATCCTCCCTCCCCCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCTTCCTTCCCTCCTTCCCTCCCCCCCTCCCCCCCCCCC;SVTYPE=TRA;CHR2=8;END=103933714;SVLEN=0 GT ./. E3508781 contig1 size272 2 cov1.11 278 4 52 4 52 58 0 0 0 0 72 2 39.5 1 60 24 0 0 0 0 7 0 3 0
20 62123945 N . <TRA> 37.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGGGCGAACGGCTGGATGGATGGAGGGATGGATGGATGGGTGGATGGGAGGAAGGATGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAGAGATGGATGGATGGATGGATGGACAGAAGGATGGATGGGTGGGGAGATGGATGGATGGATGGATGGATGGATGGATGGATAGAGAGAAGGATGGATGGTTGGGACAATGGATGGATGGATGGAGGGATCGATAGATGGATGGATGGATGGACAGTCGGAAGGATGGGTGGGGAGGCGG;SVTYPE=TRA;CHR2=14;END=70198809;SVLEN=0 GT ./. E5024 contig1 size285 2 cov1.06 389 3 16.6666666666667 1 31 97 3 9 0 0 208 3 1.33333333333333 0 0 75 0 0 0 0 20 1 9 0
21 9551189 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATTGAATTTCAAGAATAAACATTTTCATTTCACCACATCTCATTTCCACTTAATTTCAATTACATCATAACATTTCATAATTTCCCTTCATGATTTCACTTCATATAAGCTCATTTATCGGATCATCAATTTTCATCTCATTTCATCTCATCGCATTTCATCATTACATCTCATTTCTTCTCATTTTATGTCATCATTTCATTTCATCATTTCATCCGATCTCATCTTATCCTTTTTTCTTGTCATCTCCTTTTATCTAATTTTATTATCTTCTCTCTTTC;SVTYPE=TRA;CHR2=15;END=21349125;SVLEN=0 GT ./. E989408 contig1 size282 2 cov1.07 354 1 40 1 40 108 1 33 1 33 210 0 0 0 0 58 0 0 0 0 9 0 4 0
21 9551316 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATTGAATTTCAAGAATAAACATTTTCATTTCACCACATCTCATTTCCACTTAATTTCAATTACATCATAACATTTCATAATTTCCCTTCATGATTTCACTTCATATAAGCTCATTTATCGGATCATCAATTTTCATCTCATTTCATCTCATCGCATTTCATCATTACATCTCATTTCTTCTCATTTTATGTCATCATTTCATTTCATCATTTCATCCGATCTCATCTTATCCTTTTTTCTTGTCATCTCCTTTTATCTAATTTTATTATCTTCTCTCTTTC;SVTYPE=TRA;CHR2=15;END=21349125;SVLEN=0 GT ./. E989408 contig1 size282 2 cov1.07 353 1 60 1 60 86 0 0 0 0 210 0 0 0 0 58 0 0 0 0 10 0 4 0
21 10775770 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAATGGCACCGTTTTTTAATGATCCGGAGAAAACGGAGATGTACACTCTTTCCCTGCACGACGCGCATCCGAACGGAATGGAATGGATAGGAATGGAGTGGAACTGAAAAGAAAGAAAAGGAATCGAATTGAATGGAATGGAATGGACCCGCATAGAATGGAATGGCATCGAATGGAATGGAAGGGACTGTAGGGGAATGGAATAGAATGAAATGGAATGGAATTCCTTGAATCGAACAGAATTTAATGGAATGCAGTGGACACCACCGGAATCGAAAGTGAA;SVTYPE=DUP;CHR2=21;END=10860602;SVLEN=84832 GT ./. E3378868 contig2 size284 2 cov1.06 2930 4 15 1 60 993 3 2.33333333333333 0 0 2873 34 0.147058823529412 0 0 995 15 4 1 60 5 0 4 0
21 10790155 N . <DUP> 5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCGATCTGGAGTGCAGTGGAGTGGAGTGGAGTGGAGTTCAGGGGAGTGGAGTGCAATTTAATGTAATGGAATGGAATGGAGTGCAGTGGAGTGGAGTGGAGTGGAATGGAATTGTTTGGAGGGGAGTGGAGTGGAGTGGAGGGGAATGGAGATCGGAG;SVTYPE=DUP;CHR2=21;END=10808048;SVLEN=17893 GT ./. E2911016 contig1 size160 2 cov1.89 2015 50 3.96 2 60 665 14 0.214285714285714 0 0 592 17 7.41176470588235 1 60 213 4 31.25 2 60 14 1 17 1
21 10798149 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGTGGAGTGGGATGGAGTGGAGTGGAGTGGGGTGGAGTGGAGTTGAATTGAACGGAATGGACTGGAAGGGAATGGAATGGAGTGGAATGGAATGGAATGGAATGGAATGGAATGGAGTGGAATGGACTCGAATGGAATGGAGTGGAATGTAGTGGAGTGGAGTGAAGTGGAATGGATTGGAGAGGAGTGGAGTTGAGTGGAATGGAAGGGAGTGGAGTGTAATGGAGTTGAGTGGAGTGGAGAGGAGTGGTGTGGAATGGAGTGGAATCGAGTGAAATGGAATA;SVTYPE=DUP;CHR2=21;END=10858354;SVLEN=60205 GT ./. E378833 contig1 size286 2 cov1.06 2748 7 0.285714285714286 0 0 886 1 60 1 60 1170 76 8.30263157894737 8 57 362 30 5.63333333333333 1 60 3 0 3 0
21 10801399 N . <DUP> 4.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGGAATGGACTGGAATGGAATGGATTCGAATGGAATCGAATGGAACAATATGGAATGGTACCGAATGGAATGGAATGTAATGGAACGGAATGGAATGGAATAGAATGGAATGGAACTGAATGGAATGGAATGGAATGGAATGGAATGGAATAGAATGGAATGATATCGAAAGGAATGGGCTCGAATGGAATGGAATTGAGTGGAATGAATTCTAATGGAATGGAAACGAATGGAATGCAATGGAATGGAATTGAATGGAATACAATGGAATGGAATCGGA;SVTYPE=DUP;CHR2=21;END=10831475;SVLEN=30076 GT ./. E258253 contig1 size282 2 cov1.07 3764 39 1.82051282051282 0 0 1221 10 1.9 0 0 18297 217 4.11981566820277 5 50.2 8231 97 4.07216494845361 2 40 11 0 10 0
21 10820713 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTGAAACGAAAGGGAGAGAATGGGATGGGAAGGGAAAGAAAGGAAAGGAAAGGAAAGAGAGGGAAAGGAAATAAAGGGAAGGGAAGGAATAGAGAAGAAAGGAAAAGAAAGGAAAGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGCAATGGAATGGAATCAACCGGAAGGGAATCGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCGAATGGAATGGAAAGGAATGGAACGACAC;SVTYPE=TRA;CHR2=3;END=72768405;SVLEN=0 GT ./. E297669 contig1 size266 2 cov1.14 1203 13 16.7692307692308 3 60 422 6 5 0 0 243 1 60 1 60 66 0 0 0 0 4 0 3 0
21 20702434 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTCTTTATATATATATTTATATATATTTCTTTATATATATATTTATATATATTTCTTTATATATATTTATATATATCAGTATATATTTCTTTATATATTTATATATCAGTATATATATTTCTTTATATATATTTCTTTATATATATTTCTTTATATATATATATCAGTATTTGTGTATG;SVTYPE=TRA;CHR2=11;END=42304035;SVLEN=0 GT ./. E978364 contig4 size180 3 cov2.52 107 12 55 11 59.6363636363636 34 0 0 0 0 120 0 0 0 0 41 0 0 0 0 0 0 1 1
21 21960406 N . <TRA> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATATATATACCCTGGTCTGTGTATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATACACACCCCGGAGTGGGTATATATATATACACCCGGGAGTGGGTATATATATATACACCCGGGAGTGGGTATATATAGATACACCCGGGAGTGGGAAGGTATATATACAGCCTGGAGGGGGGATATATGTACGCAGTAGTGGGTATATAGATTC;SVTYPE=TRA;CHR2=1;END=195466932;SVLEN=0 GT ./. E2846990 contig1 size234 2 cov1.29 51 2 11 0 0 7 0 0 0 0 83 0 0 0 0 24 0 0 0 0 4 0 3 0
21 27039776 N . <TRA> 3 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAAAATGGAACAACATACTATACTAAAAGTTATAGGAATGTGGTCTCTCAAAATATCTTATTCTACTGTATTCAACACATTCAAAATAATAAAATATTCAAGATATTCAAAATATCTTATTGTCTTTTCTGTCTGCAGTTGACTACAGGGAACTGAAACCACAGAAAGCAAAACTGTGGATAAGGGGGATTACTGTATGGCATAAGATTCAAGTAAGGCAGACTGGAGAATAGCCATTGGAGTTGCATATAATTTAGGTTAATGGTGAGCATTA;SVTYPE=TRA;CHR2=13;END=110264901;SVLEN=0 GT ./. E3248595 contig1 size274 2 cov1.10 490 15 0 0 0 170 9 0 0 0 870 6 0.166666666666667 0 0 326 4 0 0 0 5 0 8 0
21 33264612 N . <TRA> 47 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAAAGCAAAATTACGACTAAAAAAAAAAAAAAAAAAAAAAACGGAACTCAATACAAAAAAATCAACTGAAAACAAAAGAAGGCAGTAATTTTAAAAACAGCAGGCAAGCCAGGTGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGATCAGGAGTTCAAGACCAGCTTGGCCAACATGGTGAGACCTCTGCCTCTATAAGAAAATACCAAAAAATTAGCCAAGCCTGGTGGCGCATGCCTGTAGTCCCAG;SVTYPE=TRA;CHR2=1;END=243066888;SVLEN=0 GT ./. E475201 contig1 size281 2 cov1.07 95 0 0 0 0 34 0 0 0 0 139 14 54 13 56.3076923076923 36 0 0 0 0 0 0 1 0
21 45024792 N . <TRA> 3 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACACAATATACACACCAAACACTGTGCACACACCACACACCACACACAATACATACCACACACCACATACACACCATGCACTACACACTACACACACCACACACACAACATACACACCAAACACCATGCACACACCACACACACACCAAACACTATACACACCACATACACACCACATACAACATATACACCAAACACTACACACTACACACACCACACACACAACATACACACCAAACACCATGCACACACCACACACACACCAAAAACTATACA;SVTYPE=TRA;CHR2=19;END=35789280;SVLEN=0 GT ./. E3488574 contig2 size279 2 cov1.08 444 7 35.1428571428571 3 60 118 4 26.75 1 47 339 6 0 0 0 102 1 45 1 45 5 0 7 0
22 20342140 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGCCCGCGTCGACCGTCCTGCGCCTCGCGGACGTGGTCGCCGCCCACGGCGTCGCCGACGGGGTCGCCGTCCACGGCCTCGCCGACGGGGTTGCCGTCCAGGGCAGCGCTAACGGGGACGCCGTCCAGGGCATCGCTAACGAGGACGCCGCCCTGGGCATCGCCAACGACGACGCCGTCCAGGGCATCGCTAATGAAGATGGAGTCCACGGTATCGATAACGAGGACACCGCCCAGGGCATCGCCAACTGGGACTCCGTCCAGGGCCTCGCCGACGGGGACGCCGTCCAGGGCCTCGCTGACTGGGTCGCCGTCCAGGGCCTCGCTGACGGGGACGCCGTCAAGGGCATCGCTGATCGGGACGCCGTCAAGGGCA;SVTYPE=DEL;CHR2=22;END=20714788;SVLEN=-372648 GT ./. E1065623 contig5 size376 3 cov1.20 415 6 18.5 2 43 127 3 9.66666666666667 0 0 216 9 11.6666666666667 2 38.5 65 7 5.85714285714286 1 39 4 0 4 0
22 24293599 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCACCCTGAGCTCCAGCGTTTGCTGGTCTGGCTGGCATACAGAGATGCAGCTGGAGCACAATTCAGTGGAGGAGGCAGGGCTATAACTAAGCAGTAGGGCAGAGAGCAGAGCCAGAGCCCCCTGGGCAGGCCAGAGGGAGGACCCTGCTCAGCTGACTCTTCCCAACTGCTGCCCTTGGTACAACCAGCTTGAGTCACCTGCTACAGAACAGGGGCTGGACACAGGAAAGATGGCCCTCTGATGGGGTCAAGGTCTGTGACCCAGTGACTAGCAGAGAGGCTTCCTCTTCCCTGATGCCTCCCAGATAGGGGCCTCAGAAAGCTG;SVTYPE=INV;CHR2=22;END=24331604;SVLEN=38006 GT ./. E1616133 contig1 size328 4 cov1.84 129 0 0 0 0 31 0 0 0 0 124 3 0 0 0 21 0 0 0 0 4 0 6 0
22 29965541 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAAAATGCAGAAGCTAGGCAAGAGGCCCTCAGGACTTCCGACACTGAAATTTACATCCTGGCTGGGCACAGTGGCTCACACCTGTAATCCCAACACTGGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAGTAGTTTGAGACCAGCCTGGGCAACGAGAGCAAAACTCCATCTCAAAAAAAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAAAGGCAGAAATAAAAGAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTC;SVTYPE=DEL;CHR2=22;END=29965946;SVLEN=-405 GT ./. E1198404 contig1 size270 5 cov2.80 107 6 49.8333333333333 5 55.6 28 0 0 0 0 78 13 47.7692307692308 10 56.8 33 0 0 0 0 606 186 597 196
22 29987742 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGGGCAACATGGCAAAACTCTTATCTCTACAAAAATGCAAAAATTGCCGGGCGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGAAGGATCACCTGAGGCTGGGAGTTCGAGACCAGCCTGACCAACGTGGAAAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGTGCATGCCTGGCCTCCATTTCTTTTTTAAAATTATTTTTATTTCTTTTGGGTGGGCAGGGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTGGAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCATCCTGGCCAACA;SVTYPE=DEL;CHR2=22;END=29988104;SVLEN=-362 GT ./. E1020755 contig1 size341 8 cov3.54 95 9 45.8888888888889 8 48.5 24 0 0 0 0 58 8 40.25 7 46 13 0 0 0 0 547 158 534 144
22 33759249 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCATCTGACCCAGCATGGGGCTCCCGCTTTTCCCACAGGGGGCTGCTCAGGTTGACTCTCCTTTGGAGTAGCAGAGTGTGAGCTGAGGGAGACCAGGAGAGGCAGGGTCCCCCTGTCTACAGTAGTATCTGCACACATTCCAAAACCCAGAATGGTTGCCTGAAACCATGCAATAGTGCTGTATAAGTCCGTTTTCACGCTGCTGAAACTACTGATGCAGCTACTCGCAGGCTGAGCCCTGGGAATTTCTTTTTCAACAGTGGCCCCCATTAATTCTGATACAGGGTAGGTTTGGGGACCTCTGAAAGGGGGTGGTCACCTACCAGGCATGCTGTGGGAAGGGGGATTTCTGTACTGCGCAGAAGACTAGGTTTGAAGACCTCAAAGCTGCCTTCCAACCTGATTGGGAGCTCTCTTTATGCTATGTCAGTGATGAGTTTTCTCAACATTCTCATCAAGAACATCCCCATACTTGTTCTTCTTTTACTTGTGCTGTCCATATGTGTATGGACAGCTGCCCTATGAGCAGAGTCAGTTTTTCTCAGTGCTGCTCCCTCTAGTTAGTACTTGGTCCAGGCACTGGGATACTGATAGCTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGCCGCCCAGGCTGGAGTGCAGTGGCACTATCTCCGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA;SVTYPE=DEL;CHR2=22;END=33838399;SVLEN=-79150 GT ./. E2160416 contig1 size735 26 cov5.34 133 24 48.625 19 58.1052631578947 32 0 0 0 0 86 25 58.2 25 58.2 37 0 0 0 0 18 0 15 0
22 35566379 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAGCCTTCAGATGAAAGTTGAGATCCTACAGGACCAAGTAGGCGGAGATAATATTTCCTTTTAAATTATAGAATATAAGCCTTCTGCCCTTTCTGAATAGAACACTGTAAAATTATATCTATATACGTATATATATATATACACATATATACGTATATATGTGTATATATACACATATATATGCGTATATATGTGTATATATACACATATATATACGTAGATATGTATATATTTTTTAACCCACTGAGGGCGGATGATCTAAAGTAGAGGCGGTTTGGGAGGTT;SVTYPE=TRA;CHR2=7;END=39458677;SVLEN=0 GT ./. E3966559 contig1 size286 2 cov1.06 94 20 59.5 20 59.5 24 0 0 0 0 154 1 60 1 60 35 0 0 0 0 3 4 0 0
22 38065350 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTACTGTTTTAGAGATGGTCTCACTCTATTGCTGAGTCTAGACTGTAGTGGTGCAGTCACGGCTCATTGCAGCCTCTAACTGCTGGGTTCACGTGATCCTCCTGCCTCAGCCTCCTGAGTAGCTAGGAGCACAGGCATATGCCACCACACCCAGCTAATTTTTTAAAAAATTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGGGGCTGAGGCGGGTGGATTACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTATAAATACAAAAAAAAAAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGCGCCTGTAATTCCAGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGGTTGCAGTGGCTATTCACAGGCAGGATCCCACTGCTGATCATCGTGGGAGTTTTGACCTGCTCTGTTTCCGACCAGGGCCAGTACAGTCCTCCTTAGGCAAACTTGTGGTTGCCTCTCCCAGGAGGTCACCATATTGATGCCAATCTTAGCGCACTACAGCCCACGATTCCTGGGCTCAGGCGATCTTCCTGCATCAGCCTTCCAAAACGCTGAGATTACAGGCATGAACCACTGTGCCCAGCTTGTTTACATTTTTTAACTGAACCATCTGAGAGTATGTTACAGATGCTAACACAGTTCACCGAAAATTCTTCAGCTTGTATGACCTAAGAGCAAGGACAGCCTACACAGCCACCATCCAGGATTACACGAG;SVTYPE=DEL;CHR2=22;END=38065506;SVLEN=-156 GT ./. E2285151 contig1 size786 31 cov5.96 169 12 52.1666666666667 12 52.1666666666667 41 1 60 1 60 120 18 49.6111111111111 16 54.125 38 0 0 0 0 552 163 556 164
22 43601849 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGTGTGTGGGGTGTGGGGGGTGTGGGGTGTGTGGGGGGTGTGGGGGGTGTGGGGGGTGTGGGGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGCGGTGTGTGTGGAGTGTGTGGAGTGTGGGGGGTGTGTGGTGGGTGTGGTGTGTGTGGTGGGTGAGGGGTGTGTGGGGTGGGCGGGGGGTGCGGGGGGGGGGGGGGGTGAGGG;SVTYPE=TRA;CHR2=7;END=157275053;SVLEN=0 GT ./. E4466009 contig1 size411 3 cov1.10 100 2 4.5 0 0 20 0 0 0 0 142 2 30 1 60 67 2 60 2 60 3 0 16 1
22 43601896 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGTGTGTGGGGTGTGGGGGGTGTGGGGTGTGTGGGGGGTGTGGGGGGTGTGGGGGGTGTGGGGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGCGGTGTGTGTGGAGTGTGTGGAGTGTGGGGGGTGTGTGGTGGGTGTGGTGTGTGTGGTGGGTGAGGGGTGTGTGGGGTGGGCGGGGGGTGCGGGGGGGGGGGGGGGTGAGGG;SVTYPE=TRA;CHR2=7;END=157275053;SVLEN=0 GT ./. E4466009 contig1 size411 3 cov1.10 128 4 0 0 0 24 1 27 0 0 142 2 30 1 60 67 2 60 2 60 3 0 16 1
22 44936030 N . <TRA> 27.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCTTCCCCCACACCCAACACCCCATCCACCCCCCCCCCCACCCATCCACCCACCCACCCATCCACCTGCCCCCCCAACCACCCACCCCTCCACCCACCCCCCCCCCCACCCATCCATCCATCCACATATCTACCCATCCACCCACCCACCTCCCCACCCACCCACCCACCCACCCTCCCGTCCATCCACCCACCCACCCACCCACCCACTCACCCACTCACCCACCCACCCATTAGCCCACCCACCTACCCATCCATCACCTATGCATCCACTCACCCATTCA;SVTYPE=TRA;CHR2=12;END=132890456;SVLEN=0 GT ./. E3804408 contig9 size286 2 cov1.06 118 0 0 0 0 46 1 60 1 60 90 0 0 0 0 38 0 0 0 0 3 0 4 0
3 8907578 N . <TRA> 32 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAATTAAAAGCTAACATTCAAGAAGTGTGTGTGTATGTGTGCGTGTGTGTATGTATGCATGTGTGTGTGTGTGCGCATGTGTGTGTGTGCGTGTATGTGTGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC;SVTYPE=TRA;CHR2=13;END=100129099;SVLEN=0 GT ./. E3171030 contig1 size202 2 cov1.50 92 0 0 0 0 44 0 0 0 0 98 0 0 0 0 37 0 0 0 0 3 0 4 0
3 19776832 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGAAGGAGGGGGAGGGAGGGGGGAAGGAGGGTGGAGAGGGAGGGAGAAAGAGGGGGAGGGAGGGAGGAAGGAGGGAGGAGAGGGAGGGAGAAAGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGAGGGGGAAGGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGGGGGGGGAGGGGAGGGGGGGAGGGAGGAGGGAGGGGGGG;SVTYPE=TRA;CHR2=18;END=51387863;SVLEN=0 GT ./. E1745032 contig1 size279 2 cov1.08 52 0 0 0 0 33 0 0 0 0 421 4 4.75 0 0 161 3 11 1 31 3 0 14 1
3 19776864 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGAAGGAGGGGGAGGGAGGGGGGAAGGAGGGTGGAGAGGGAGGGAGAAAGAGGGGGAGGGAGGGAGGAAGGAGGGAGGAGAGGGAGGGAGAAAGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGAGGGGGAAGGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGGGGGGGGAGGGGAGGGGGGGAGGGAGGAGGGAGGGGGGG;SVTYPE=TRA;CHR2=18;END=51387863;SVLEN=0 GT ./. E1745032 contig1 size279 2 cov1.08 61 3 40 2 60 49 0 0 0 0 421 4 4.75 0 0 161 3 11 1 31 3 0 14 1
3 22097802 N . <TRA> 30 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAATATTTTAAATATTTTAAAAATGTTTTAAAACTCTGAAAACTTTATAAAATATTAAGCATAATCACATTAATTGCTGACATACTTCCTAATTAATGAGGAA;SVTYPE=TRA;CHR2=4;END=125230275;SVLEN=0 GT ./. E608395 contig2 size205 3 cov2.21 120 26 3.30769230769231 2 40 44 5 0 0 0 147 8 22.5 3 60 43 1 37 1 37 12 0 7 0
3 25400602 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGCCCACGTCGGCCCAGCCGCCG;SVTYPE=TRA;CHR2=12;END=72666892;SVLEN=0 GT ./. E3103918 contig4 size192 2 cov1.57 383 48 38.4791666666667 35 48.3714285714286 34 0 0 0 0 98 42 50.3809523809524 41 51.0243902439024 24 1 40 1 40 66 0 94 0
3 25401059 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAACTTCCAATACTATGTTGAATAGGAGTGGTGAGAGAGGACATTCTTGTCTTGTGCTGGTTTGCAAAGGGAATCCTTCCAGGTTTGCCCATTCAGTATGATATTGGCTGTGCGTTCTCATTAATAGCTCTTATTATTTTGAGATATGTTCCATCAATACCTAGTTTATTGAATGTTATTAGCATGAAGGGTTGTTGAATTTTATTGAAGGCTTTTCCTGCATCTAATGAGATAATTATGTGGTTTTCATCATTGGTTCTGTTTATGTGATGGATTACATTCATTGATTTGCATATGTTGAACCAGCCTTGCATCCCGGGGATGAAGCCGACTTGATCATGGTGAATAAGATTTTTAATGTGCTGCTGGATTCAGTTTGCCAGTATTTTATTGAGGATTTTCGCATTGATGTTCATCAGGGATATTGGCCTGAAATTTTCTTTTTTTTTTTTAATCTCTGCCAGGTTTTGGTATCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGACCACGTCGGCCCAGCCGCCGTCGGAGGAGGAGCGGGAGCCGTGGGAGCCGTGGACGCAGCTGCGCCTGTCGGGCCACCTGAAGCCGCTGCACTACAATCTGATGCTCACCGCCTTCATGGAGAACTTCACCTTCTCCGGGGAGGTCAACGTGGAGATCGCGGCATCAAATCTGTTGAAATGTATATTATAGCCATATCCTACATATACATGCAATGGTATTTCATGCAGCTACAAAAATAATGGTATTACTGTTTACGTGCTTATATAGAAGAAGTTCTCTGCTTATTTTTTTAACTCTTATTTAAACTTAACTTGTCATACTTTGTTATTAATATACAAAGACAATAAACTTTTAAAACACTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACACATTCAAAAGCTAGCAGAAGACAAGAAATAACTAAAGTCAGAGCAGAACTGAAAGAGACAGAGAATTGAAAAACCCTTCGAAAAATCAATGAATCCAGGAGGTGGTTTTTTTTTTAAAAATTAACAAAATAGATAGACCACTAACCAGACTAATAAAAAGAGAAGAATGAAATAGACACAATAAAAAATGATAAAGGGGAGATCACCACTGAACCCACAGAAATACAAACTACCATCAGTGAATACTATAAACACCTCTATGCAAATAAGCTAGAAAATCTACAAGAAATGGATAAATTCTTAGACACATACACCCTCCAAAGACTAAACCAGGAAGACGTCGAATCCCTGAATAGACCAAAAACAAGTTCTGAAATTGAGGCAGTAACTGATATCCTACCAACCAAAAAAAGCCCAGAACCAGATGGATTCACAGCTAAATTCTACCAGAGGTACAAAGAGGAAGTGGTACCATTCCTTATGAAACTATTCCCAACAATAGAAAAAGAGTGACTCCTCTCTAACTCATTTTATGAGACCAGCATCATCCTGATACCAAAACCTGGCAGAGATTAAAAAAAAAAA;SVTYPE=TRA;CHR2=10;END=60477224;SVLEN=0 GT ./. E3103918 contig1 size1634 168 cov15.53 380 30 30.1 16 48.8125 42 0 0 0 0 88 59 40.9322033898305 42 55 30 0 0 0 0 88 0 153 0
3 26650960 N . <TRA> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTGTGTGAGATTTTTATTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTGAGCTTTATCAGGCAATTTGGTACAATAAAGTTTAGCTTTTGGTTGAAAATATTGAATTATTATAGTCACTGTTGAGAATTATTTTGCTACATCACGTTTGTTTCTTT;SVTYPE=TRA;CHR2=1;END=106823659;SVLEN=0 GT ./. E2480976 contig2 size215 2 cov1.40 410 21 49.3333333333333 18 54.8333333333333 37 0 0 0 0 37 27 52.4074074074074 26 54.2692307692308 22 13 55.3846153846154 13 55.3846153846154 3 0 5 0
3 26663922 N . <INV> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACCTTTCCAGTAAAGGGGCTGTGAGTCTAACTGTATGTGTGGTTCCCTCCACCACACCCTAAATCAAAAGTTCCATCCCTGGAGTCTCTTTAATTCTAGAGACACTGAGATTTAGCTCATACAGAAGGAGAAAATGACCTTCAACTGGATAAGCTTTCCTTGAGTACCCATTAGATACAAAACACTGCTGGATGTTGCAGTGAGAACAAACAAACAAAAAGCACAGGGAATACTCATATGTGAGTGAAGAGATAAATCTATAAATATATAAGTTCCGCAAGTGATTGGCAAATAAAATTCTGAGAGGGCAAAGAGAGGGGAAAGATTTCTGCCTCGAGTCAGAGGACTGGGGTAGCGGAAAAAAGCTTTAGAAAAAAAGGTGGTATTTGTAGAGTCTGGAGAGGCGGGTTCCTCTGCCCCAAACTGGTGTCTACTGCAGATATGGTAAATAATTAAAATCATGAAATAAGAACATCACTAAAACCATTAATTTGACTTACTCTTAAAACACACGCGCGCACGCGAGCGCGCTCGCACACACACACACTGGCGTGCGCGCGCTTTTTTAAGGGGCCTATAGACTCCATTTCGGCTGCAGGTTAAAGTCATCCCAGGAAGGAGAAAGGAAAATTGAATTCCACCTTCTTCTGATTTAGAAAGCTAGATTGGTTGAGGATCGGGATCAGGGACCACAACTCAACCCCGAAACTTTGGGCTTCCAGAACTGCAGGGGAAACTGATTCTGAGATCTGACAACGGACCCTGGGGCGGGAGGGGGGTACCTTATTCATAACCCTCCCTCACAATAGCGGAGCACAGTACTCAGCACCCAGTAAACACTCATTTGTCGAATTGATTTTAAGCCTCCGCTTTTCCCCCAAGGAGGGCAATCAATCCCTTGCACGTTTTGCTCCTTTCACCAGCTTAATTCAGCTCTGATCTCAGTAGTTAGAAAAATAGGAGAAAGAATGGGGCCATAGCCTGCTGCAAGTAGAGCTGTGTAAGGGGGTGCGAGGAAGGCAGGCGAGAGCAGCAGAGGGAGTTAATACTCCTACCTCAGCTGGTCTCCGGCAGCCAACGCTCAGCCCCCGCCTCCTCTCTCCATTCCGGACCCCGCAACCGCGAGGCGAGAGAGCAGCGCCGGCGAGGCACTGGCTGGGCTCTGACTGTCACGTTAATTCCCTGCTGCTTTTTCTAGTCCCCAGCCGCCTCGCCCCTCCTCCCTCATTCCCAGCCTGGGTTTGGAGGCGATTTCCCTCTATTGACTGAGCCGACTGCATCTCTGGGCAAGCGGCGCTTTGCCTCTCTCCTGTCTTTGTCTGCTCTTCCTGCAAGGCTACGGCGCCTGGAGCAGGGTCTGCAGCGGCCGCCGCAGCAACGCGAGCCAAGTCGTGCCCCGCACGGCCGCCCGGGGCCGCACCCTCGCTCGGTGGCGGCGCCCGAAGACGCCAGCCGCGCCACGCCTCCTTGGGGGAAAAGCGGAGGCTTAAAATCAATTCGACAAATGAGTGTTTACTGGGTGCTGAGTACTGTGCTCCGCTATTGTGAGGGAGGGTTATGAATAAGGTACCCCCCTCCCGCCCCAGGGTCCGTTGTCAGATCTCAGAAT;SVTYPE=INV;CHR2=3;END=26664499;SVLEN=576 GT ./. E2489092 contig1 size1609 148 cov13.89 335 99 58.040404040404 99 58.040404040404 33 0 0 0 0 154 107 58.8691588785047 107 58.8691588785047 19 0 0 0 0 1484 159 892 141
3 27007856 N . <DUP> 42.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTAAAAATACAAAAAAAAAAAAAAAAAAAAAAATTAGTCAGGCACGGTGGCTGACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGGGGATCTCCTGAGTTCAGGAGTGCAAGACCATCCCGGGCAACATGGTGAAACCCCGTCTCT;SVTYPE=DUP;CHR2=3;END=153162700;SVLEN=126154844 GT ./. E1536812 contig2 size154 2 cov1.96 161 9 3.44444444444444 0 0 48 2 0 0 0 122 73 45.4657534246575 60 52.1166666666667 31 22 45.0909090909091 18 53.2222222222222 13 1 3 0
3 49283352 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATAATTTACAAAAATTAATGCCTTTTTGTGGCCTAAAAATTAATCCCCAACTGTCTGCATAGAAGCACTGTACTGTCTGCTGGATTTCAACCTGGGCATCCCACACACAGGGCATATGCATCTGTTTAGAAACTTGTTCTGGGGCCGGGCACAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTAAGGCGGGAGGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAAAATGACGAAAGCCCGTCTCTACTAAAAATGCAAAAAAAATTAGCCAGGCGTGGTGGCAGACACCTGTAATCCCAGCTACTTGG;SVTYPE=DEL;CHR2=3;END=49283795;SVLEN=-443 GT ./. E2482455 contig1 size323 5 cov2.34 131 8 50.875 8 50.875 43 0 0 0 0 127 17 46.7058823529412 14 53.7857142857143 37 0 0 0 0 694 237 694 233
3 49520642 N . <TRA> 12 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGAGGGTGGTGGCTGTTGAAAGGATCCCAGATTCTGCATTTCTTCTGGACTTGCATCATTTATCCAGCCCAGTAGCTATTTTTCTTTTTCTTTTTTTCTTTCTTTCTTCCTTTTTTTTTTTTTTGACAGAGTTTTAGTCTTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAA;SVTYPE=TRA;CHR2=X;END=897182;SVLEN=0 GT ./. E3612995 contig2 size207 2 cov1.46 157 1 9 0 0 50 2 36.5 1 60 79 0 0 0 0 60 0 0 0 0 5 0 5 0
3 51212071 N . <DUP> 3 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCAGGAGACATAGGAGGCATGACTGCTTTACTTCAGAAATTTGAGGTTACAGTGAGCTGTGATTGCACCACTGCAATCTGTCCCAGGAGATAGAGTAAGATCCTGTGTATAAAATGAAAAAATAAAGAAAAATAAAATGATTTTAAGTTAAAAAATAATTCATAGATCTCCACTTCTTTAGGGTCACTTGAATATATATTTTTCTCGTTTCATTAGGCTATATTTCCTGGTTGCTTTTAAGTACTGTGGTTTTGTTAAGGTTTTGGTCAATTAAGAAACCACTACCTATTTTATCCTTTATGAAAA;SVTYPE=DUP;CHR2=3;END=57785693;SVLEN=6573622 GT ./. E2007763 contig1 size307 3 cov1.48 699 33 17.4545454545455 7 31.1428571428571 191 8 12.5 1 29 160 19 0.631578947368421 0 0 57 7 0.285714285714286 0 0 5 0 5 0
3 59125549 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAACCTGTGCTTCAATTAGGAATTGATCAATTG;SVTYPE=TRA;CHR2=8;END=92677072;SVLEN=0 GT ./. E2834631 contig1 size248 2 cov1.22 168 10 39.6 10 39.6 43 2 40 2 40 147 51 44.1176470588235 38 58 39 14 52.2857142857143 12 60 12 0 14 1
3 60132754 N . <DEL> 52.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGCTAGAGAGAATGGGGGTAGCTACGTTCAAACCATTTGGATGAGGCAGGACTCGCCTGAAATGGGGTAAGTGTAGCCCTCCTAAGAAAGAAGCACTGTGCGGATGAACATCATGAACACCATCCAAGTTTCAACATGTCTGAGATTAAATCTGCAGCAAAAGTTTACTCCATTTCTGGGTGTGTAAAGCAGCTAAAACTTCCTACCATGCGTCCGCTATCCATGGAAATCCGGAACAAAAGCTTAAGATCCAAGAAAATAAAATGTGTTTTGAAGAAAAATATGCTCTTGCAACATAAAGAAGCTGTCTTCAGTTACAAATAGATATAAAATGTGAAGATATATAATTGCTGCATAAATTTATTAATAGAAGTGCTAATGCCATAAATCGTACATCTCCATTTTGACACGCAATCCTTTTGAGGTTTGAATCCAGGGTCTGAGCTCTTAACTCTATACTGCCTACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATACATACATATATAAATTAACCTTTCTTATCCTACT;SVTYPE=DEL;CHR2=3;END=60204543;SVLEN=-71789 GT ./. E203918 contig1 size561 17 cov4.58 165 15 53.7333333333333 13 57.6923076923077 36 0 0 0 0 108 7 52.1428571428571 7 52.1428571428571 35 0 0 0 0 24 0 25 0
3 60872125 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAGGCGCCTATGCTAATAAGAAAGTGATCCAATATTCATGAGAAGAACTTGAAAAACTATTATTTTTGCCTGCAATCTTCTTGGCTTTTCCATAATTAATATGTCATTATCATCAGAAGGCTAAGAGATCAAGAGTGGTAAAAGCCACAAATCAAGACTCAATATCATTTCGTTGACTTGAGAGTGATGGAGAATATGCAGATTAACTTAAAGTGTGCCATATCTGTGGCTGTTATATTCTGAATAACACACACACACAAATGGAGAACCCATTCTTCCAGTATTATAAACTATCATACAATATGTATGACAGAAAGATGATTATTCATCAGTTGCAAACATAGACTGGCTATGGATATAAGAATTTGGCAAAAATCAACCAAAGCAGTGTGTGAGAATCTACTGGCTATCCAGGATTTACAATCAAGAGTAGTGATTATTTTATTCATATTTATAAATTACATGTTACATGTCCTTTATATCAGTAAAATTAATAATAAACACACATGCAAGCATGCACATTAGGGCATGCATGCACACACATACACATATTTTTCCTTGAGAGCCAGCTGTTAAACATTTACCAGCATACCACTAAATTGACCATTATTTTAAACTAAGAGGAACCTAGAAGCTCTTAAGCAGAGCCCTAGGCTCATCTTCAAATCACTAAGGTTGGGTTATAAATGGTTTTAGCTTCAGGTAAGGCTACC;SVTYPE=DEL;CHR2=3;END=61013213;SVLEN=-141088 GT ./. E4166359 contig1 size714 39 cov8.25 157 33 58.8484848484849 33 58.8484848484849 62 0 0 0 0 147 37 59.5675675675676 37 59.5675675675676 43 1 60 1 60 20 0 20 0
3 63661065 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGTGGTCCTAGCTACTCAGGAGACTGAGGCAGGAGGATCACTAGAGCCCAGTGAGCTATAATTGTGCCGCTGCATTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAT;SVTYPE=TRA;CHR2=19;END=10298694;SVLEN=0 GT ./. E60231 contig12 size188 2 cov1.61 156 2 0 0 0 38 0 0 0 0 126 0 0 0 0 49 0 0 0 0 3 0 12 1
3 68176842 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCCACCACCACCACCATCGTCATCACTATCATCATCACCCCACCACCATCATCACACCACTACCATCATCACACCACCACCACCGTCACACCACCACCACCATCATCATCACTACCACCATCATCATCACACCACCACCACCATCGTCATCACTATCATCATCACACCACCACCATCATCACACCACTACCATCATCACACCACCACCACCGTCACACCACCACCACCATCATCATCACTACCACCATCATCATCACACCACCACCACCATCACACCACC;SVTYPE=TRA;CHR2=10;END=125013981;SVLEN=0 GT ./. E2756384 contig2 size286 2 cov1.06 327 1 60 1 60 74 0 0 0 0 306 4 32.5 2 51.5 137 2 38 1 60 13 1 3 0
3 72768390 N . <TRA> 2 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTTTCCTTCTACTCAATTTCATTACACGCCACTCCCTCCCCCTCCATTTCCTTTCTTTCCCTTCCCTTCCCTTCCCTTACCTTCCATTCCATTCCATTCCATTCGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATGCCATTCCACTCGGGTTTATTCCATTCCTTTCCATTCCATTCGGGTTGAATCCATTCCATTCCATCCCGTTCCATCCCATTCCATCCCATTCTGTTCAGGTTAATTCCATTCCGTCCCTTTCCTTTCAA;SVTYPE=TRA;CHR2=20;END=29814112;SVLEN=0 GT ./. E3328092 contig1 size282 2 cov1.07 125 0 0 0 0 40 0 0 0 0 3246 143 1.04195804195804 1 60 1037 44 1.56818181818182 0 0 5 0 8 0
3 74801651 N . <TRA> 19.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCACCAAGTGCTCAGGGGTTCCCGAGACACAGTGGGGAGTGAGGTTGAGGCCGTGGTGGAGGCCCTGGGCCTGGGAGTGGGTCCTGCCCGGCTGTGTGAGGGTGGGGGGGGTGCAGTCGGCTGCCTCGGGGACGTGGGGCACGGGGATCTCATCACCGCCATTGCTGCTCCTGCAGCCACTCCTGCCACCACTGCCGGCACCTTCCTGCTGCAGCTGGTGTGATGGCAGCAGCCGCTCCAGACACTCCACATGCTGCAGCCATCACTGCCTTTGGCATGTTGAAGGGTACAGTTCAGTGGCACCGAGCCCATTCACAACGTGAATTCATCACCACCATCCATTTCCAGAACACTTTCCATCTTGCACACCTGAAACTCTA;SVTYPE=TRA;CHR2=2;END=161504861;SVLEN=0 GT ./. E3443379 contig2 size382 4 cov1.58 143 18 3.55555555555556 0 0 30 2 0 0 0 202 1 60 1 60 70 0 0 0 0 4 0 3 0
3 74801697 N . <TRA> 19.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCACCAAGTGCTCAGGGGTTCCCGAGACACAGTGGGGAGTGAGGTTGAGGCCGTGGTGGAGGCCCTGGGCCTGGGAGTGGGTCCTGCCCGGCTGTGTGAGGGTGGGGGGGGTGCAGTCGGCTGCCTCGGGGACGTGGGGCACGGGGATCTCATCACCGCCATTGCTGCTCCTGCAGCCACTCCTGCCACCACTGCCGGCACCTTCCTGCTGCAGCTGGTGTGATGGCAGCAGCCGCTCCAGACACTCCACATGCTGCAGCCATCACTGCCTTTGGCATGTTGAAGGGTACAGTTCAGTGGCACCGAGCCCATTCACAACGTGAATTCATCACCACCATCCATTTCCAGAACACTTTCCATCTTGCACACCTGAAACTCTA;SVTYPE=TRA;CHR2=2;END=161504861;SVLEN=0 GT ./. E3443379 contig2 size382 4 cov1.58 305 11 11.6363636363636 0 0 83 2 9.5 0 0 202 1 60 1 60 70 0 0 0 0 4 0 3 0
3 77338430 N . <DEL> 31 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCGGGTAAACGGGTAAGCTGAGGCTAGATCACCGAAGAAATAAAGTAAAATTGACGGCTTAATGGGTAAGCTGAGGCTAGATCACCCCAGACATAACGTAAAATTGACGGTTAAACGGGTAAGCTGAGACTAGATCACCCCAGACATAAAGTAAAATTGACGTTTAAACGGGGACACTGAGGCTAGATCACCCCAGAAATTAAGTAAAATTGATGGTTAAATGGGAAGTTGAGGCTAGATCACCCCAGA;SVTYPE=DEL;CHR2=3;END=77340928;SVLEN=-2498 GT ./. E108874 contig1 size250 2 cov1.21 181 0 0 0 0 45 0 0 0 0 134 3 57 3 57 28 0 0 0 0 3 0 11 0
3 90321422 N . <DEL> 5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGAATGCATACATCGCAAAGAAGTTTCTCAGAATGTTTCTGTCTAGCCCCCAAAGCACTCCAAATATCCATTTGCATATTCTACAAAAAGACTGCTTCCAAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAACATGGACAGCCTTGCTATCATACCCCGTAGAGTCTTCTCGCAGAGACGAAACATATTTACAGGATGTGTGCACTGGCGTTTTTAGATG;SVTYPE=DEL;CHR2=3;END=90354183;SVLEN=-32761 GT ./. E1352498 contig11 size303 3 cov1.50 1117 1 26 0 0 378 0 0 0 0 728 1 0 0 0 218 0 0 0 0 3 0 4 0
3 90332250 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAAGCAATACCGAGCAGTTTCTCAGAATTTTTCTGTCTATTTTTTATTTGAAGTTATTTCATTTTCCACTACAGGCCGTAATGCACTCCTAATATCCACTTGCAGATTCTACAAAAAGACTGTTTGCAAACTGCTCAAACAAAAGAAAAGTTCAACTCTGTGAGTTGAATGAGCACATCACAAAGAAGTTTCTCAGAATGCTTCTGT;SVTYPE=DUP;CHR2=3;END=90377368;SVLEN=45118 GT ./. E2973695 contig1 size208 2 cov1.45 527 436 2.52752293577982 16 48.3125 153 143 2.30769230769231 4 42.75 292 23 3.82608695652174 1 60 115 7 0 0 0 5 0 5 0
3 90332253 N . <DUP> 19 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCAGAGCCCCAAACGCCCCAAAAATACCCGTTACAGATTCTACTAAAAGACTGTTTCCAAACTCCTCAATGAAAAGAAAGTTTCAACTCTGTGAGATGAATGCACACATCACAAAGAAGTTTCTCGGAATGCTTCTGTCTAGTTTTTATGTGAAGATATTTCCTATTTCACCATAGTCCTCAAAGGGCTCAGAAATGTCCCTTTGCAGATTCTTTGAAAAGACTGTTTCCAAACTACTGAATGCAATGAAAGGTTTAACTCTGTGGGATGAAGGCACATATCA;SVTYPE=DUP;CHR2=3;END=90340523;SVLEN=8270 GT ./. E4446056 contig1 size285 2 cov1.06 994 33 13.0909090909091 9 40.7777777777778 307 6 9 1 37 192 4 12.25 0 0 53 1 18 0 0 9 0 8 0
3 90332390 N . <DUP> 19 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCAGAGCCCCAAACGCCCCAAAAATACCCGTTACAGATTCTACTAAAAGACTGTTTCCAAACTCCTCAATGAAAAGAAAGTTTCAACTCTGTGAGATGAATGCACACATCACAAAGAAGTTTCTCGGAATGCTTCTGTCTAGTTTTTATGTGAAGATATTTCCTATTTCACCATAGTCCTCAAAGGGCTCAGAAATGTCCCTTTGCAGATTCTTTGAAAAGACTGTTTCCAAACTACTGAATGCAATGAAAGGTTTAACTCTGTGGGATGAAGGCACATATCA;SVTYPE=DUP;CHR2=3;END=90340523;SVLEN=8133 GT ./. E4446056 contig1 size285 2 cov1.06 1138 6 32.3333333333333 3 53.3333333333333 354 3 43.3333333333333 3 43.3333333333333 192 4 12.25 0 0 53 1 18 0 0 9 0 8 0
3 90353974 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCACTCCTAATATCCACTTGCAGATTCTACAGAAAGACTGTTTGCAAACTGCTCAAACAAAAGAAAAGTTCAACTCTGTGAGTTGAATGAGCACATCACAAAGAAGTTTCTCAGAATGCTTCTGTCTAGTTTTTATGTGAATATATTTCCTTTTCCACTATAGGCCGTAATGCGCTCCAAATATCCACCTGGAGATTCTACAAAAAGACTGTTTCCAAACTGCTCAATCAAAAGAAAAGCTCAACTCTGTGAGTGGAATGAGCACATC;SVTYPE=DEL;CHR2=3;END=90441451;SVLEN=-87477 GT ./. E1712621 contig1 size268 3 cov1.69 1461 47 9.31914893617021 6 43.5 561 20 5.75 1 45 292 5 0 0 0 83 1 53 1 53 3 0 3 0
3 90453627 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTCTACTTTTTAGGTGGGGGTATTCTTGTTTCCAACAAAGGCCTCAAAGTGGTCCCAATCTCCTATTGCAGATTCTACAAACAGAGTGTTTCACACCTGCTCTCTCAACGGCACGGTTCCCCTCTGTGTGTTGAATGCACACATCACAAACAAGTCTCTGAGAATACTTCTGTGTAGTTTTTCTTCGAAAATATTCCAGTTTCCAACGAAGGCCCAAAAGCAGTCCAAATAGCCGCTTGCAGATTCTGCTAGAAGAGTGTTTCAAAACTGCTCTAT;SVTYPE=DEL;CHR2=3;END=90491463;SVLEN=-37836 GT ./. E658615 contig2 size277 2 cov1.09 282 220 9.13636363636364 22 37.5454545454545 64 61 8.9672131147541 8 37.25 358 1 0 0 0 125 1 3 0 0 4 0 4 0
3 95035898 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCTGTCTTAGTCTCTCTCTCTCTCTCTCCCTGTCTGTCTGTCTCTCTCTCTCTCTCCCCCTGTCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGTCTCTCTGTCACTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTCTGTGCCTATCTTCTGTCTTACTCTCTTTCTCTGGCTGACTGCCTGTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTGTCTCTCTCTACCTCTCTCTCTCCCTCTCTGTCTTTTTGTGTCTGTGTCCTTC;SVTYPE=TRA;CHR2=X;END=3053114;SVLEN=0 GT ./. E2767402 contig2 size285 2 cov1.06 181 0 0 0 0 38 0 0 0 0 243 122 1.47540983606557 0 0 76 40 2.325 0 0 3 0 11 0
3 95874517 N . <INV> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTGAAAGAAATGTGGAATTATGTGAAGAGACCAAATCTATGACTGATTGGTGTACCTGAAAGAGATGGGGAGAATCGAACCAACCTGGAAAACATATTTCAGGATATCATCCATGAGAACTTACCCAACCAAGCTAGAGAGGACAACATTCAACTTCAAGAAATGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGA;SVTYPE=INV;CHR2=3;END=163464479;SVLEN=67589963 GT ./. E3444345 contig1 size243 3 cov1.86 192 62 28.2903225806452 29 58.9310344827586 57 10 36 6 60 193 26 6.80769230769231 3 59 31 4 0 0 0 7 0 9 0
3 107273555 N . <TRA> 32 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGTATGGTTACTTGCGGAGTTTAACTTATGCATTTTTTATTCTTTAATTTATTCTGTCTAGTTTCTGTAGCTCTTTGATTCGTGAGTACTTATTTTCTAGATTTCTAGAAAGATCATGCAATTGCACTCCAGCCTGGGCAACAGGGGCGAACCCCCGCCCCAAAACAACGACGACAACAACAACAACAACAGCAAAAAACGACTGTTTCTACGATAGATACATAAGATTGATATGGGTGCAGATCGCAGGAGCGTCGTGTCGGGAGGGAG;SVTYPE=TRA;CHR2=1;END=21070557;SVLEN=0 GT ./. E2589997 contig1 size270 2 cov1.12 185 11 56.7272727272727 11 56.7272727272727 42 1 60 1 60 112 0 0 0 0 27 0 0 0 0 2 0 1 0
3 128604825 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTAAAAATACAAAAATTGGCCGGGCATGGTGGCGGGTGCCTGTAATCCCGGCTATTCAGGAGGCTGAAGCAGGCGAATTGCTTGAACCCAGGAGGCAGAGATTGTAGTGAGCCAACATTGCACCACTGCAACCTCTACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTATCTGGGACTGCAGGCATGCACCACCACGCCCGGGTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGGTTGGTCTTGAACTCCTGACCTCATGATCTGCCTTCCTCAGCCTCCCCAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCAGCTAATGAAAAATATTTTGAAAAATAATCAGGCCAGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTACGGAGACTGAGGTGGGTGGATCACCTGAGGTCGGGAGTTCGATACCAGCCTGACCAACATGGAGAAACCTCAT;SVTYPE=DEL;CHR2=3;END=128605019;SVLEN=-194 GT ./. E2591256 contig1 size488 16 cov4.95 130 15 42.9333333333333 11 49.8181818181818 39 0 0 0 0 91 9 39.3333333333333 9 39.3333333333333 26 0 0 0 0 523 170 597 194
3 130081127 N . <TRA> 30.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCGGCCACTGGGGAGTCTGGGTCGGCAGAGACACGTGAAGCGAGGGTTGGCGGGCCGGAGGTGGGGTGGGACTGCTCACCTGCATTCCAGCCTGCTTGTCCGTGCGAGCTCTTGTCTCAAAAAAAAAAAAAAGAAAAAAAAAGTTATCCAGGAAAATCTGGACCCTCGCCTAATTCTTCTCCATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTAGGAAAAATAGCTTCAAAATAATACACTT;SVTYPE=TRA;CHR2=7;END=131257722;SVLEN=0 GT ./. E3976122 contig6 size266 2 cov1.14 143 1 0 0 0 30 1 0 0 0 154 14 36.7142857142857 10 48.7 33 3 41.6666666666667 2 51 5 0 3 0
3 137861723 N . <TRA> 38 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATTTCGCAAAAGAAGATATACAAACAGCCAAGAAACATATGAAGAAATGCTTGGCCGGGCGCAGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTAGATCACCTGAGGTCAGGAGTTTGACACCAGCCTGGCCAACATGATGAAAC;SVTYPE=TRA;CHR2=X;END=40391849;SVLEN=0 GT ./. E2882740 contig2 size162 2 cov1.86 176 18 47.9444444444444 15 55.4666666666667 51 1 60 1 60 99 2 46.5 2 46.5 24 0 0 0 0 1 0 2 0
3 149292637 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGGTAGCCAGGATGGTCTTGGTCTCGATATCCGGCCCCCTGATCTGCCCACTTCGTCTTCTCAGAGTGCTGGGATTAGAGGCGTGAGCCACCGCCCCCGGCCTGTTCTATAAATTTCTAAGTGATACACATAAAGTTTATTTTAAAAATTACATCACACTACATTAAAATTTACTCTTTCTCCAGGTGTATTCCATCTATCTATCTATCTATCTATCATCTATCATCTATCTATCTATGACAAGGCCTTGCTCTGTCACACAGACTGGAGTTCAGTAGCTCAATTATGGCTCACTG;SVTYPE=TRA;CHR2=4;END=167499654;SVLEN=0 GT ./. E2236877 contig1 size335 3 cov1.35 650 54 0 0 0 183 11 0 0 0 152 2 0 0 0 49 1 0 0 0 6 0 4 0
3 152178421 N . <INV> 9 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGAGGCAGCCTGACACTTGCTGATCTTGTCTTTTAAGTGTGGAGTCCTCTATGGAGTGGGTTGGGTACTTACTAGCTGGCCTCTGCCAGCTGTTTGGCTGCCTCAGTTTCTGCCCTTCACAGACATGCTGGCCACCTGGTGTGACATTCAGTGGCCTTGTTTGCAGCTAGTATGATGAGACAAGTGGATCAGGTACATTATAAACTGAAAAAGCACACAACATGCAGAGGGAAAGGATAAATGACCATGTGTATCCTGCTCTGCTAAAGTCCACATCACATGACTGAGATGATGAACTTTTTTTCTGTTTTTTTTTTTATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGTACTGCACCCACTCACT;SVTYPE=INV;CHR2=3;END=197851256;SVLEN=45672834 GT ./. E960541 contig1 size410 11 cov4.05 238 36 1.55555555555556 1 50 72 9 0 0 0 401 2 2 0 0 84 0 0 0 0 10 0 7 0
3 152896617 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGTCTCGGTGGCGGGTGCCTATAATCCCAGCTACCCACGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAAATGGTGCAGTGAGCCAAGATCGTGCCATTGCACTCTAGCCTGGGCAACAGAGTGAGACTTCATCTCAAAAACAAAACAAAACAAAAAACTTGGTTGGCCTAGTGGCTCAATCCCAGCACTTTGGGAGCCCAAGGCAGGTGAATTGTTTGAGCCCAGAAGCTCAAGACCAGTGTGAGC;SVTYPE=TRA;CHR2=7;END=87441819;SVLEN=0 GT ./. E2951981 contig2 size254 2 cov1.19 206 10 1 0 0 55 1 0 0 0 172 34 0.647058823529412 0 0 37 9 0 0 0 5 0 5 0
3 178111037 N . <TRA> 39 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTTGCAGGGACCCGAGATTGCGCCACTGAAGGCCGCAGCCAGGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAATAAAAAAATAAAAAAAAAAAAAAAAATGGGAAGAAGTAGATTTCGGCAGGCCAATGCTGCCCCTGAGAATAAAAAGAAAAAAAGCCACATAACATATGGTAATCATCTGTTTGAAGTCTTCACACTGCTACAACAGAAAAGAGAAATG;SVTYPE=TRA;CHR2=6;END=101596143;SVLEN=0 GT ./. E43475 contig1 size235 2 cov1.29 143 56 45.6071428571429 41 59.7073170731707 38 23 45.0434782608696 17 60 154 5 25.8 2 46 59 2 30 1 60 3 0 11 1
3 180554119 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCCCACTCTTCTTCTATATAGTACTGGAAGTCATAGCCAGAGCATTCAAGCAATAGAAAAAATAAAAGACATCTAAATACATTAAAAATGTCAAACTATCTTCACAGATGATATAATTCTATGCCTAGAAAACCCTAAAGACACCTCCATAGGCTCTGGAACTGATAAACACACTTCAGTCAAGTCTCAGAACACAAAATCAATGCACAAAAATCAGTAAGACTTCTATACTCCAATA;SVTYPE=TRA;CHR2=1;END=69322210;SVLEN=0 GT ./. E2885880 contig8 size239 2 cov1.26 165 9 13.3333333333333 2 60 43 0 0 0 0 123 14 0 0 0 46 2 0 0 0 5 0 6 0
3 195056986 N . <TRA> 57.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCCAGGCCGCTCTCGACCCCCGGACCCCAGGTGCTCCACCCGCCACAGCCTCCCAAGGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCCTTCGTTAGTTTTAAAACCAAAAATAGGGCCCCCCCCCGCAAAAAAAAAAAAAAAATTTTTTATGACGCTTCAAGAACATAGTGAAACCCTGTCTCTACAACGGAATTAAAAATTAGCGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCATGAGTTCAGGAGA;SVTYPE=TRA;CHR2=1;END=150438496;SVLEN=0 GT ./. E810396 contig1 size286 2 cov1.06 132 5 60 5 60 32 0 0 0 0 220 9 57.7777777777778 9 57.7777777777778 70 0 0 0 0 0 0 1 2
4 6257278 N . <TRA> 12.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAATAAAACAATCTTTTTTATTTTTATTTTTTAGTGACAGGGTCTCACTCCGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTTACGGTAGCCTTGAACTCCTGGGCTCCAGTGATCCTCCCACCTCAGTCTCCTGAGTGGCTAAAACTACAGGTGC;SVTYPE=TRA;CHR2=1;END=88473124;SVLEN=0 GT ./. E897774 contig2 size164 2 cov1.84 75 15 13.7333333333333 0 0 50 6 16.1666666666667 0 0 81 12 0 0 0 41 1 0 0 0 6 0 4 0
4 9973697 N . <TRA> 8 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAGTCTCTCTAAAAGAAAGAAAATACTCTTGTTTGGGAATAGAGCATTGAATAGAAATATGTGTGCCATAGTAAACCATGTGCATATGCAGGGAGGTAAAGACTCTGCTAGAACATTTGTATGTTGCTGTAAAGAAATGCCTGAGGCTGAGCTATTTATAAAGGAAAGAGGTTTAATTGGCTCATGGTTCTACAGGTCTGATAGGATGCATGGTTCTGACATCTGCTTCTGGTGAGAGCCT;SVTYPE=TRA;CHR2=7;END=94641503;SVLEN=0 GT ./. E3059411 contig2 size242 2 cov1.25 598 25 7.88 0 0 211 5 8.6 0 0 230 0 0 0 0 64 0 0 0 0 5 0 5 0
4 12785174 N . <TRA> 35 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCATCGCGGGCTGAGGTAGTAAATACTCACACCCGTCCAACCAGCGCAAACAACCCCAACCCAACCTAAAAAAAAAAAAAAAAAAAAACCTAAAGATCCATAAAACAAGCTAATGTTTTTGTTTCTGTGTGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGGTTTTCCTTTTTTTGCCCCGGCTGGGGGGGAGGGGCACGATCCCGGCTCCCCGCCACCTCTGCCCCCCGGGTTCAAGTGTTTCTCCTGCTTCCCCCTTCCCTGGTTGCTG;SVTYPE=TRA;CHR2=14;END=104278398;SVLEN=0 GT ./. E2003421 contig2 size283 2 cov1.07 84 1 0 0 0 53 1 60 1 60 99 20 59 20 59 35 8 52.625 8 52.625 4 0 3 0
4 37231764 N . <TRA> 22 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGAAGGAGAATGGCGTGAACCCAGGTGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAGGTTTAACTCTATAGGTTGAATCCACACATCACCAAGCAGTTTCACAGATAGCTTCTATCTAGTTTATATCTGGGGATATTTTCTTTATCACCATAGGGCTATAAACATTCTCAAATGTC;SVTYPE=TRA;CHR2=11;END=50072654;SVLEN=0 GT ./. E1401568 contig1 size263 2 cov1.15 109 4 10.5 0 0 48 0 0 0 0 267 17 5.17647058823529 0 0 59 4 0 0 0 7 0 8 0
4 37231766 N . <TRA> 5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTCGGGAGGCTGAGGAAGGAGAATGGCGTGAACCCAGGTGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGGGTTAACTCTATAGGTTGAATCCACACATCACCAAGCAGTTTCACAGATAGCTTCTATCTAGTTTATATCTGGGGATATTTTCTTTATCACCATA;SVTYPE=TRA;CHR2=11;END=50072654;SVLEN=0 GT ./. E697553 contig2 size224 2 cov1.35 110 13 4.92307692307692 0 0 48 7 3.71428571428571 0 0 267 17 5.17647058823529 0 0 59 4 0 0 0 7 0 8 0
4 37510915 N . <TRA> 6 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGGCAGAGGGTCTCCTCACTTCCCAGAAGGGGTGGCCAGGCAGAGGCGCCCCCCACCCCCCAGACAGGGCGGCTGACTGGGCGTGGGCTGCTCCCCACCTCCCTCCCTGCCGGGGTGGCTGGCCGGGCGGGGGCTGCCCCCCAACTCCCTCCCAGATGGGGCGGCTGGCCGGGAAGGGGCTGCCCCCCACCTACCTCCCAGATGGGGTGGCTGGCCGGGCA;SVTYPE=TRA;CHR2=6;END=87949118;SVLEN=0 GT ./. E1972434 contig1 size222 2 cov1.36 120 41 2.39024390243902 1 37 41 5 0 0 0 142 50 14.64 14 39.6428571428571 56 24 9.70833333333333 2 38.5 5 0 4 0
4 38656803 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAACTAGCCGGGTGTGGTGGGACATGCCCATAATCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATCACTTGAAGCTGGGAGGAGGAGGTTGCAGTGGCACAATCTCGGCTCACTGCAAAGTCGCCTCGCAGGTTCAAGCGATTCTTCTCCCTCAGCCTCCGGAGTAGCTGGGATTATAGACACGTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGG;SVTYPE=DEL;CHR2=4;END=38657160;SVLEN=-357 GT ./. E4326884 contig1 size230 4 cov2.63 44 3 59.3333333333333 3 59.3333333333333 26 0 0 0 0 58 6 58.1666666666667 6 58.1666666666667 38 0 0 0 0 368 202 390 204
4 43882577 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCCATTCCAATCCATTCCATTAAATTCGGGTTCATTCCATTCCATTCCTTTCCATTCCGTTCAGTTCCATTCCATTCCATTCCATTCCTCTCGTGTTGATTCCACCCCATTCCATTCCATTGATTCCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCGGGTTCATTCCATTCCATTCCATTCTATTCCATTCGTTTCGTTTCCATTCCTTTCCTTTCCATTGCATTCTTTTCCGTTGCTTTCCATTTCTTTCCTTTCCTTCCCTTTCCTTTCC;SVTYPE=INV;CHR2=4;END=49101580;SVLEN=5219002 GT ./. E3245838 contig1 size286 2 cov1.06 392 38 1.28947368421053 0 0 115 16 0.5625 0 0 39516 12 1.66666666666667 0 0 12753 3 0 0 0 6 0 4 0
4 49251731 N . <TRA> 4 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCACGGGGGTGTGGACAGCGCCTGCAATGGGGGGATCCAAACGTTTTTCCCCCCCCCGGATATGAGGAACAATATCACAAGGGGGTTGTACAACCCCTGTGATATTGGGAGTAACTTTATACCCTTTCCACATGGATATTAGGAACAATATCACAGGCGGAGTTTACACCCCCTGCTATTTTACCTGTAATATTATTCTCTTCCAACCTGGATATTAGGAATAATATAACAGGAGGGGTGACAACCACCTGTGATATTGGGAGTAAACTCATTCTCTCCCCCCC;SVTYPE=TRA;CHR2=Y;END=13285111;SVLEN=0 GT ./. E410303 contig2 size285 2 cov1.06 590 3 17.3333333333333 1 33 227 0 0 0 0 392 1 0 0 0 124 0 0 0 0 4 0 18 1
4 57914181 N . <TRA> 41 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGCTAAATTTTGTATTTTTTTAGATATGGGGTCTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGAGCTCAGGCAACCTGCCTGCCTCGGCCTCTCAAAGTGCTGGGATTATAGGTGTGAGCCACCACGCCCGGCCTCCCCTTCGCCCCCCGCCCGCCCCC;SVTYPE=TRA;CHR2=3;END=49368469;SVLEN=0 GT ./. E3864709 contig1 size164 2 cov1.84 188 5 57.6 5 57.6 43 0 0 0 0 113 12 54.0833333333333 11 59 25 0 0 0 0 0 0 3 0
4 63016359 N . <DUP> 3 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAGAGAGAGAGAGAGAGACAGGGAGAGAGAGAGAGAAAGAGAGAAAGAGACAGAGAGAGAAAGACAGAGAGAGAGAAACAGACAGAAAGAGAGACACAGACAGAGACAGAGAAACAGCCGACAGGGGGGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGACAGACAGACAGGCAGAGAAAGACAGTAAGACAGAAGACAGACACACAGAGAGAGAGAGAGACAGAGACAGAAAGAAAGACAAAGACAGAGAGAGAGAGAGAGAGAGAGAGA;SVTYPE=DUP;CHR2=4;END=80273897;SVLEN=17257538 GT ./. E3074008 contig2 size277 2 cov1.09 216 7 34.2857142857143 4 60 66 3 21.3333333333333 1 60 10019 43 2.2093023255814 1 40 3337 10 3.8 0 0 13 1 10 0
4 63016407 N . <DUP> 3 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAGAGAGAGAGAGAGAGACAGGGAGAGAGAGAGAGAAAGAGAGAAAGAGACAGAGAGAGAAAGACAGAGAGAGAGAAACAGACAGAAAGAGAGACACAGACAGAGACAGAGAAACAGCCGACAGGGGGGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGACAGACAGACAGGCAGAGAAAGACAGTAAGACAGAAGACAGACACACAGAGAGAGAGAGAGACAGAGACAGAAAGAAAGACAAAGACAGAGAGAGAGAGAGAGAGAGAGAGA;SVTYPE=DUP;CHR2=4;END=80273897;SVLEN=17257490 GT ./. E3074008 contig2 size277 2 cov1.09 364 10 2 0 0 125 4 2.5 0 0 10019 43 2.2093023255814 1 40 3337 10 3.8 0 0 13 1 10 0
4 64069041 N . <TRA> 11.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACATATGATATATCTATACTATATATACTATATATAGTATATATAGTATATATAGCATATCTATACCACATATACTATATATAGTACATATGTAGTATATCTATACTATATATACTATATATAGTATATATGTAGTATATATAATACGTATATATAGTATATATGTAGTATATATACTACGTAT;SVTYPE=TRA;CHR2=X;END=81772538;SVLEN=0 GT ./. E1881422 contig2 size185 2 cov1.63 15 1 56 1 56 4 0 0 0 0 37 9 49 7 60 9 3 60 3 60 9 0 6 0
4 83762621 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTACTCCAGCCTGGGTGACAGAATGAGACTCCATCTCAAAAAAGAAAAAAAAAATTTTATATATATATATATATATATATATATATATATATATATACACACACACTAAAAATACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC;SVTYPE=TRA;CHR2=1;END=182899674;SVLEN=0 GT ./. E39669 contig2 size189 2 cov1.60 35 7 33 4 50 10 1 60 1 60 57 0 0 0 0 23 0 0 0 0 3 0 11 1
4 83786512 N . <TRA> 2 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATATATATTAGAAAATAAGAAGTGTGGGGGAAGATGTGAAGAAGTTGGAAATTCCCATTATTGGTGGGAATGCAAAATGGTGCAGCCACTGTGCAAAACAGTATGGCGTTTCCTCAAAAAAGTAAATAGAATCATCCTATGATCCAGCAATCCCACTTATGTGTATATATCCCAAGGAGTTTAAATTAGACTATCAAAGAGATATTTGCACACCCATGTTCATAGCAGCACTATTCACAACAGCCAAGAGGTGGAAGCAACCCAAGTGTCCATCAACAGATGAAT;SVTYPE=TRA;CHR2=16;END=71050417;SVLEN=0 GT ./. E996260 contig1 size286 2 cov1.06 130 11 0.363636363636364 0 0 30 0 0 0 0 222 3 0 0 0 75 1 0 0 0 3 0 7 0
4 100031730 N . <TRA> 59 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCCAGCTTTTAGCCGACTTTAGAGCAGAAGAAGTCTCTTTATTTGGTCTAAAATTTTCGAAGAATATCTCTGATGCCTTCCTTCTATGGAATAAATGGTTTTCTTTTCTTTTCTTTGTTCTTTTTTTTTTCTTTGTTTTTTTTTTTTTCTTATTTTTTTTTTTTTGCTTTGTTTGTTTTTTTTTTTGTTTGTTTTTTTTGTTGTTGGGGTTTTGTGTTCTTTGTGTGTGTGTACCACTCTACCCATCCTATATTTATTGTCCTGTATTCGGTCTGTTCTGCCT;SVTYPE=TRA;CHR2=7;END=55103982;SVLEN=0 GT ./. E2764855 contig1 size286 2 cov1.06 151 0 0 0 0 33 0 0 0 0 144 24 59.8333333333333 24 59.8333333333333 48 1 60 1 60 1 0 3 1
4 125391736 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCTCAGTCCGTGGCTGGCGTACGAGCGCGCGTCCTGCCTCTCTTCCTGCCTTGTGTTCTTCCGTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCCTTTCTGTTTCCTGCCTTTGTGGCTCCTTGTGTGCTTCGTGTGTGTGGCCGGTTCTTTCTGATGGTCT;SVTYPE=TRA;CHR2=17;END=13951684;SVLEN=0 GT ./. E1460639 contig1 size275 2 cov1.10 186 2 0 0 0 58 0 0 0 0 124 4 0.5 0 0 53 5 7.2 0 0 3 0 6 0
4 158907289 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGCTGGAGGCGTACGATCACTGCGAGGAGAGGTGGGGAGGGGGGCGGGTCGGGAGGGGCATAGCATTGGGAGGTATACCTAATGCTATATGACAAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGCGCACATGTACCATAAAACTTAGATTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAATGGTTACCCACTGCCTGCAAATCCTTGGCAAG;SVTYPE=TRA;CHR2=11;END=85041860;SVLEN=0 GT ./. E474657 contig2 size267 2 cov1.13 232 92 51.0434782608696 78 59.7179487179487 61 24 43.1666666666667 17 60 146 7 1 0 0 51 1 4 0 0 13 1 11 1
4 178270194 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTCTATCCCTGTCCATCTGTTCCTCTCTGTTGTTGTCTCTTTCTCTTTTCGAGTGTTTCTATTTATAGCTGGGTGTGTGCCTGTTCCCAGGTCTCTGTCTCTAGCTCTGTGTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACACGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCGTGGGTCA;SVTYPE=TRA;CHR2=19;END=49151462;SVLEN=0 GT ./. E3648161 contig2 size286 2 cov1.06 115 0 0 0 0 41 0 0 0 0 78 13 57.6923076923077 13 57.6923076923077 29 1 60 1 60 0 1 0 0
4 186748531 N . <TRA> 2 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTATCATCACTGTCACCAACAGCACCATCACCACCATCATCATCACCATTACCATCCTCATCATCACCATTACTATCATCACCATCATCACCACCATCACCATCATCACCATTATCATCACCATCATCATCACCATCACCATCATCATTACCATCATCACCATAATCATTACCATCACCACCACCACCAGCAGCAGCAGCACCATTATCACCATCATCATCACCATCATCATCATCACTGCCATCACCATCATCACCATCATCAGCACCATCATCATCATCACCATCATCATCGTCATCACCACCACCACCACCACCACCACATCCTCCCCACCACCCTCACCCTCCTCCTTATCCTGATCGCGCTCATCACCCACCGCCGCCGCACCCACCACGCCA;SVTYPE=TRA;CHR2=5;END=97651602;SVLEN=0 GT ./. E1694257 contig1 size401 3 cov1.13 685 2 4.5 0 0 236 1 40 1 40 87 0 0 0 0 29 0 0 0 0 9 0 3 0
4 187033865 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGACGGGTTGATGAATGTTGTCAAAGGCTTTTTCTGCATCTGTTGAGATAATCGTGTGGTTTTTGTCTTTGGTTTTGTTTAAATACTGGATTACATTTATTGATTTGCAACCCAAAAAATAGGAGAAAGTTTTTGCAATGTACGCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT;SVTYPE=TRA;CHR2=X;END=75897463;SVLEN=0 GT ./. E57323 contig1 size185 2 cov1.63 275 204 0.42156862745098 0 0 68 52 0 0 0 87 80 0.025 0 0 16 8 0 0 0 12 0 7 0
5 28787995 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCATTTTATGTTTCCAATTTCTCCCTTTTGGAACGTGAGTGCTATCTTATTTCTGTCTTATCACACTGTAAAGTTTTTTTTTTTTAAGTTTAGTCACACAAAGTATGTTACTGGAGTAAAACACAATCTCCTGAGTAGCTGGGATTACACGTGTGCACCACCACACCCAGCTAATTTTTGTATTTTTGTAAAGATGGGATTTTGCCATGTTGCCCCGGCTGGGCTCCAACTCCTGA;SVTYPE=DEL;CHR2=5;END=28963096;SVLEN=-175101 GT ./. E2879700 contig3 size237 3 cov1.91 83 20 49.9 19 52.3684210526316 47 0 0 0 0 36 19 41.2631578947368 14 52.0714285714286 36 0 0 0 0 12 0 7 0
5 28787996 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTTTTTTAAGTTTAGTCACACAAAGTATGTTACTGGAGTAAAACACAATCTCCTGAGTAGCTGGGATTACACGTGTGCACCACCACACCCAGCTAATTTTTGTATTTTTGTAAAGATGGGATTTTGCCATGTTGCCCAGGCTGGTCTCCAACTCCTGACCTCAAAGTCATCCGCGTTCCTGGGCA;SVTYPE=DEL;CHR2=5;END=28963096;SVLEN=-175100 GT ./. E2879700 contig2 size188 5 cov4.02 83 19 51 18 53.6666666666667 47 0 0 0 0 36 19 41.2631578947368 14 52.0714285714286 36 0 0 0 0 12 0 7 0
5 31930312 N . <TRA> 35 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCCGGGGGGCAGAGCTGCCAGGGGGCAGCGATCGCCTCCCTGCACCCCAGCCGGGGCGACAGAGCGAGACTGTCTCCAAAAAAAAAAAAAAAAAAAGACTAAATGTACGACATATCTTTAAAAGGTAATAGCATATCAATTTGGTTAGATTTTTAAAACCAGTGCCACGTATGTTTATTTACTACTATGCCACTACTATGTAGAGTTCC;SVTYPE=TRA;CHR2=9;END=31029111;SVLEN=0 GT ./. E3022846 contig3 size211 2 cov1.43 79 1 30 1 30 34 1 54 1 54 252 37 49.1621621621622 31 57 93 1 60 1 60 1 0 7 8
5 31930368 N . <TRA> 35 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCCGGGGGGCAGAGCTGCCAGGGGGCAGCGATCGCCTCCCTGCACCCCAGCCGGGGCGACAGAGCGAGACTGTCTCCAAAAAAAAAAAAAAAAAAAGACTAAATGTACGACATATCTTTAAAAGGTAATAGCATATCAATTTGGTTAGATTTTTAAAACCAGTGCCACGTATGTTTATTTACTACTATGCCACTACTATGTAGAGTTCC;SVTYPE=TRA;CHR2=9;END=31029111;SVLEN=0 GT ./. E3022846 contig3 size211 2 cov1.43 74 0 0 0 0 39 0 0 0 0 252 37 49.1621621621622 31 57 93 1 60 1 60 1 0 7 8
5 43377818 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGATACTACATTAGACTTAGTTGTCATCCTCATTAGTTTCCTCTTGGCTGTGACAATTTTCCCCACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAG;SVTYPE=TRA;CHR2=10;END=92227511;SVLEN=0 GT ./. E4297876 contig1 size164 2 cov1.84 55 4 0 0 0 37 2 30 1 60 179 68 53.1617647058824 61 58.8852459016393 40 12 60 12 60 3 0 6 0
5 45996244 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCGTTTGGTGTTTTAGACATTAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATTGCCTAGGCTTTTTTCTGATTCTTATCTGAAGATATTTTCCTTTTCCCCACAGGCCACAATGCACTCCCAAATATCCCTTTGTGGATTCTACAAAAACAGTGTTTCTAAACCACTGAATGAAAAGAAATGTTTAAGTCGGCGAGACAAATGCACACAT;SVTYPE=TRA;CHR2=1;END=79480651;SVLEN=0 GT ./. E3078726 contig1 size256 2 cov1.18 168 14 10.7142857142857 0 0 75 0 0 0 0 141 1 0 0 0 54 0 0 0 0 5 0 4 0
5 63979148 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGCGAAAGAGAGAGAGAAAAACAGGCAGGACAGGAGGGAGAGAGAGAGAAAGAGAGAGAAAGAAAGGACAGAAGGAGCGAGAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAATCCCACCACGAGGACCCGGAAATAGTGTGTGATCTGTGTCCCGGCCTAGTCCCCTGTCTGGTGTGTCGCTGACTGAGGATTCCACAAATGAAGGGCAGCGGGGTCGCTT;SVTYPE=TRA;CHR2=12;END=33135502;SVLEN=0 GT ./. E3942439 contig13 size285 2 cov1.06 71 1 53 1 53 37 0 0 0 0 117 8 0.625 0 0 33 2 0 0 0 3 0 4 0
5 68317876 N . <TRA> 1 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTGCATTCCATTCCATTCCTTTCTGTTCCATTCAATTCCATTCCATTCCATTCTATTCGTGTTAATTCCATTCCATTCTATTCCATTCCATTCCATTGAAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCTTTCCATCCCATTCCATTCCTTTCCCTCCCCTCCCATCCCCTCCCCTCCCATTCCATCCCATCCCATCCCCCTCCCTCCCCTCC;SVTYPE=TRA;CHR2=10;END=42375150;SVLEN=0 GT ./. E1986233 contig8 size262 2 cov1.15 66 7 9 1 60 35 2 8.5 0 0 6421 29 0.275862068965517 0 0 2275 6 0 0 0 3 0 15 0
5 94594988 N . <TRA> 5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTAGTAATCAGTACCTGGGTCATCATGTCTGAGGTGGAGAGTGAATTCATCAACTGGGCAGCAACCACGGCAACAGAAGCCAACCGCAGTCAATGCTGGCTATGCATCAAATTGCCAGAGACCACAGGAAATGGACTGCCTTGCAGAGTTGTCCTTGCCAATATTTCTGAATGGCTCTGTCACTACAAATGGGGCCAAAACAACAACACTTGCAATCCAACCTGGACTTCCTTTGCTACTTTAATAACATCTTAATACACTATAATTGTA;SVTYPE=TRA;CHR2=11;END=99052297;SVLEN=0 GT ./. E1963720 contig2 size272 2 cov1.11 620 324 23.5925925925926 87 54.8045977011494 189 102 23.578431372549 28 53.4285714285714 156 12 9.75 1 40 43 3 9 0 0 16 0 15 0
5 97651568 N . <TRA> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTATCATCACTGTCACCAACAGCACCATCACCACCATCATCATCACCATTACCATCCTCATCATCACCATTACTATCATCACCATCATCACCACCATCACCATCATCACCATTATCATCACCATCATCATCACCATCACCATCATCATTACCATCATCACCATAATCATTACCATCACCACCACCACCAGCAGCAGCAGCACCATTATCACCATCATCATCACCATCATCATCATCACTGCCATCACCATCATCACCATCATCAGCACCATCATCATCATCACCATCATCATCGTCATCACCACCACCACCACCACCACCACATCCTCCCCACCACCCTCACCCTCCTCCTTATCCTGATCGCGCTCATCACCCACCGCCGCCGCACCCACCACGCCA;SVTYPE=TRA;CHR2=4;END=186748254;SVLEN=0 GT ./. E1694257 contig1 size401 3 cov1.13 97 0 0 0 0 40 0 0 0 0 468 0 0 0 0 174 1 60 1 60 3 0 8 0
5 97651602 N . <TRA> 2 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTATCATCACTGTCACCAACAGCACCATCACCACCATCATCATCACCATTACCATCCTCATCATCACCATTACTATCATCACCATCATCACCACCATCACCATCATCACCATTATCATCACCATCATCATCACCATCACCATCATCATTACCATCATCACCATAATCATTACCATCACCACCACCACCAGCAGCAGCAGCACCATTATCACCATCATCATCACCATCATCATCATCACTGCCATCACCATCATCACCATCATCAGCACCATCATCATCATCACCATCATCATCGTCATCACCACCACCACCACCACCACCACATCCTCCCCACCACCCTCACCCTCCTCCTTATCCTGATCGCGCTCATCACCCACCGCCGCCGCACCCACCACGCCA;SVTYPE=TRA;CHR2=4;END=186748254;SVLEN=0 GT ./. E1694257 contig1 size401 3 cov1.13 87 0 0 0 0 29 0 0 0 0 468 0 0 0 0 174 1 60 1 60 3 0 8 0
5 105522555 N . <TRA> 32 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCCCCCAGCAGTTCTTGTGAGAAACAGAGTCTCATTTCTATTAGATAAAGCCACCTTTTCTTTCTTTTCTAGGGGAGAATATTTGCTTTCTAAGTTTATCATGAGAAGAGGAAGAGGAGCCTTCTTTTTTTTTTTTTTTTTTTTTTAGATGGAATCTTTCTCTTTCACCCCGGCTGGAGTCCAGTGGCCTGGTCTTGGGTGACCTCCAGCCCCCCCCCCCCCGTTCCCCCCCTTCTCCTGCCCCCCCCCCCCGAGTAGCTTGGACCACCGGCC;SVTYPE=TRA;CHR2=7;END=73740969;SVLEN=0 GT ./. E2814295 contig1 size275 2 cov1.10 79 8 60 8 60 25 1 60 1 60 121 4 48.75 3 60 45 0 0 0 0 0 0 2 1
5 128211062 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACCCCAGCAACGCGGAAGGCTAAGCCAGAACAATGGTGGGCACCCGGAAGGCAGAGCTTGCAGTAAGCCGAGACCGCGCCACTGCACTCAAGCCTGGGGCAACAGAGCAAGACTCCGTCTAAAAAAAAAAAAAAATCACAAATGTTTATAGAAGCAGTATTCACAATAGCCAAAATATAGAAACAACACAAATGTTCATCAACTGATGAATGAGCAAACAAAATGTGTTATAGCCATATAATGGAATATTATTTGGCAATAA;SVTYPE=TRA;CHR2=4;END=151093680;SVLEN=0 GT ./. E2983312 contig2 size264 2 cov1.14 83 7 3.28571428571429 0 0 37 1 0 0 0 133 0 0 0 0 38 0 0 0 0 5 0 5 0
5 156202979 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTATTCAATAAAAAACTGAGTCACTCAATACCTAGTACTGGGAGACTTTGTGAAGACTTCCTCTGTCATAGACCTGATAAGGCACATGGATATGATTCTAAATATAAAGAGAAAGTACTAGAAAGTTGAATTCCTGTATTAGATCATTCTCATACTGCAATGATGGAGTACCTGAGACTGGGTAACTTATAAAGTAAAGAAGTTTAATTGACTCACATTTCCACATAATTGTGGGGGCACCTCAGAAACCTTCCAATTACAGTGGCTGACAAGTGAAGTGAGTGAGAGCATGGGATGTACCAGATGCTTATGAAACTATCAGATCTCGTGAGAACTCACTATCACAAGAACAGCATGAGGAGAACCCGTCCCCATAATCCAATCATCTCCCCTCAGGTTTTCCCTTAACACCTAGGGGTTATA;SVTYPE=TRA;CHR2=11;END=102440440;SVLEN=0 GT ./. E3733736 contig3 size424 4 cov1.42 592 29 0.172413793103448 0 0 174 5 0 0 0 156 11 0.636363636363636 0 0 49 1 1 0 0 8 0 9 0
5 160422522 N . <TRA> 51 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGGATTCCCCGGTCCAGGAATCAAGGGTTGGAAGTGAAAGTGGCACCACCCACAATCACCCCTAATGATCCACTGGCAACATTTTTGCTTCCTGTTTCCAAGACATTATGTTCTGCTGGCCTAGAGGTCTTTTTTTTTTTTTTTTTGAGACCGGGGCCGCCTCTGTTGCCCAGGCTGGGGCGCCGGGGGGGGGTTCCGGCCCCCCGCCAGCGCCGCCTCCCCGGCTCACCCCATTCTCCCCCCCGCGCCCCC;SVTYPE=TRA;CHR2=16;END=58794445;SVLEN=0 GT ./. E976241 contig1 size253 2 cov1.19 64 12 56.25 12 56.25 30 1 60 1 60 77 0 0 0 0 37 0 0 0 0 1 0 1 0
5 162104002 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAGATGCCGTCAACATGTTTTTTTTACGGCCTGTAGACCGCGGGCCACTACACTCTCTCCTCTGACTACACTCCCCCGTCTTCGGGATTTCTCTATATCAATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTACAGTATATATACAGTATATATATATATAGTATGTATATATACAATATATATATATAGTATGTATATATACAGTATAGATCGAGAGAGCGTCGTGTAGGGAAAGAGTGTAGCTCTCGGTG;SVTYPE=TRA;CHR2=7;END=147119163;SVLEN=0 GT ./. E4075694 contig4 size258 2 cov1.17 104 0 0 0 0 54 0 0 0 0 142 13 51.6153846153846 12 55.9166666666667 26 1 60 1 60 1 0 1 0
5 169514230 N . <TRA> 30.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAGTTCAGACGTGTGCTCTTCCGATCTCACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAGAGTGATAAATGCCATTCACAAGTTTGGGGATTTGGAGTTAATATAATATCAAATAACCAATTTAGACATTGTGTAGACATAGATCGGAAGAGCGTCGTGTAGGGAAAGA;SVTYPE=TRA;CHR2=3;END=169294627;SVLEN=0 GT ./. E4322019 contig2 size180 2 cov1.68 76 0 0 0 0 47 0 0 0 0 144 11 60 11 60 32 1 60 1 60 1 0 0 2
5 169514261 N . <TRA> 30.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAGTTCAGACGTGTGCTCTTCCGATCTCACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAGAGTGATAAATGCCATTCACAAGTTTGGGGATTTGGAGTTAATATAATATCAAATAACCAATTTAGACATTGTGTAGACATAGATCGGAAGAGCGTCGTGTAGGGAAAGA;SVTYPE=TRA;CHR2=3;END=169294627;SVLEN=0 GT ./. E4322019 contig2 size180 2 cov1.68 86 0 0 0 0 50 0 0 0 0 144 11 60 11 60 32 1 60 1 60 1 0 0 2
5 178758588 N . <TRA> 30 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGGGAGGGAGAGGATGGGGAGAGTGAGGAGGGGAGGGGAGGGGAGGGAGAGGAGGGGAAGGGAGGGAGAGGAGGGGGAGAGAGGGGAAGGGAGGGAGAGGAGGGGGAGAGAGGGGAAGGGAGGGAGGGGAGGGGGAGGGAGGGAGAGGAGGGAGGGGAAAGGAAGAGAGGGGAAGGGAAGGGAAAGGAGGGGAATGGAGGGGAGGGAAAGG;SVTYPE=TRA;CHR2=1;END=34330531;SVLEN=0 GT ./. E1231148 contig1 size214 2 cov1.41 27 0 0 0 0 22 0 0 0 0 46 29 53.4137931034483 26 59.1153846153846 20 7 60 7 60 15 1 8 0
6 20232263 N . <TRA> 25 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=X;END=42828498;SVLEN=0 GT ./. E3251915 contig1 size154 2 cov1.96 32 1 23 0 0 13 0 0 0 0 23 5 45.2 3 60 7 2 46.5 2 46.5 5 0 4 0
6 20232336 N . <TRA> 25 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=X;END=42828498;SVLEN=0 GT ./. E3251915 contig1 size154 2 cov1.96 38 2 20 1 40 9 0 0 0 0 23 5 45.2 3 60 7 2 46.5 2 46.5 5 0 4 0
6 27410686 N . <INV> 30 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCGTGGAGCTGGGACCACGCGGAACTCCCTCTCCTACATTTTTTTCAGCCCCACCGCGAGTTTGCATCCGCGGGACTTTTAAGAGGGAGTCACTGCTGCCGTCAGCCAGTAATGCTTCCTCCTTTTTTGCTTTTAGGTTTTGTCTTGCCTTTTTTTTTTTTCTTTCTTTTTTTCTTTCTTTTTGTTTTTTTCTTTCTTTCTTTCTCTTCCCCGCACTCTCCCTCCCCTGCGCTCTCTCTCTTTTTCTCCCCCTTCCCCTCCCGCTC;SVTYPE=INV;CHR2=6;END=119558697;SVLEN=92148010 GT ./. E2271620 contig2 size268 2 cov1.13 237 10 19 2 56.5 68 6 4.5 0 0 126158 28634 45.0062862331494 21758 58.5136041915617 42571 10087 44.8543670070388 7618 58.583880283539 5 0 3 0
6 32555165 N . <TRA> 35.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGAGGGTTGGAGGGAGGCGGGATGGCGCCAGTGCACTCCAGCCTGGGCAAGAAAGCGAGACTCCATCTTAAAAAAATAAATAAATAAATAAATAAAATAAATAAATAAATAAATAAATAAATAAAATAAAATTCAAATTTTTTACCGTGGACATCAGAGCCTATAATGATGAGGCTCCTGACTTTCTCTCTGTGTCCTACCTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA;SVTYPE=TRA;CHR2=17;END=34187454;SVLEN=0 GT ./. E2554224 contig5 size252 2 cov1.20 110 0 0 0 0 40 0 0 0 0 78 1 0 0 0 29 0 0 0 0 12 1 15 0
6 33800609 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGTCTGGGAGGTGAGGAGCGTCTCTACCCGGCCGCTCCGTCTGAGATGCAAGCAGACGCCGGCCTACGCGACCGGCCCGTGTCTGGAGTGCGGACGTGTGCCCCCCCGATCCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGATCGGAAGAGCACACGTCTGAACTCCCGTCACGACCAGCGCTCGTATGC;SVTYPE=TRA;CHR2=2;END=71388453;SVLEN=0 GT ./. E2889849 contig2 size264 2 cov1.14 138 2 4.5 0 0 41 0 0 0 0 123 3 12 1 33 63 0 0 0 0 4 0 4 0
6 44012281 N . <TRA> 18.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCACGCACATCCACACACACCGGTCCACGCACATCCACACACAGGTCCACACACATACACACACATACGTCCACACACATCCACACACACACCCACACACACACACACACACACACACCCACCCACACGCCCCCACACACACACACACACACCCACCCACACGCCCCCTCACACCCACACACACATTCATATACACCTTCACACACACCCACGCTCACATACACACACACACATTCATATACACATTCACACACATCCATATACACCTTTACACACACATTCAT;SVTYPE=TRA;CHR2=2;END=15921077;SVLEN=0 GT ./. E3150652 contig1 size285 2 cov1.06 480 24 17.4166666666667 4 57.5 123 4 27 2 47.5 104 0 0 0 0 31 0 0 0 0 6 0 4 0
6 57267473 N . <TRA> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAATGGCGGGAACCCGGGAGGGGGAGGTTGCAGTGAGCAGAGATCCAGCCACTGCACTCAAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAATAGCAGAAGATCAAATTGTCAAAGTAAGTATTACCAAGCTTATGACTTTGAATTTTAGTGTGTGTGCTGGTGGTTTCCAAACTTTTGATTGTGTCCCCTCAGTTAAAA;SVTYPE=TRA;CHR2=2;END=238590316;SVLEN=0 GT ./. E3783855 contig1 size222 2 cov1.36 306 38 50.4473684210526 32 59.8125 93 15 40 10 60 112 5 0 0 0 33 0 0 0 0 9 0 3 0
6 58777422 N . <TRA> 32 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAATTTTTGAACACTCTTTTTTTTAGAATCTTCAAATGGGTATTTGGACAGCTTTGAGGCTTTGATTGGAAACGGGAATATCTTCACATAAAAACTAGACAGAAGCATTCTCAGAAACTTCTTTATGAAGTTTGCATTCAACTCACAGAGTGGAACTTTCCTCTTTATAGAGCAGTGTTGAAACACTCTTTTTGTAGAAACTGCAAGTGGATATTTGGACCTCTTTGAGGCCTTCGTGGGAAACGGTATTTCTTCCTATAACCCTAGACATAAGAATTTTCAGAA;SVTYPE=TRA;CHR2=21;END=14339564;SVLEN=0 GT ./. E1112706 contig4 size286 2 cov1.06 135397 123 51.8943089430894 111 56.1981981981982 40979 39 53.7179487179487 37 55.9189189189189 312 25 9.72 3 57.6666666666667 120 4 32.75 2 57 29 2 26 1
6 64384188 N . <TRA> 30.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATCCACACAGTATTCAAGCTTTTTTAGTAACCATGTTTCTTTTAAAAATCTGAAATTAGTGCTAGTGAGTTCTTATTGAGACAATATGAAGCCCTTTGCACTGTAAATATTTTATATTTTTGGAGAGACATTTGATGATATCTAAGAGTAAAAATGAATATATATGTGTGTGTATATATATACACACACATATATGTGTAATATATGTGTGTGTATATATATACACACACATATATGTGTATGTGTGTATATATACACGTGTGTGTATATATACACACACACACATATATGTGTATGTGTGTGTATATATACACACACACATATATATGGTGTATATATATACCATCTTCAACTCAGTGAACCTGTGTTTTAAAATGTATCGTAAAGAAGGAATAGAAGAGGGGAAGAAAAGCATTATTTATATAGCATTGTTAATTTTTTTCAAATTAAGAACATGATAATATCTACAAGGATAAATTCATTCCCAAATAGTTAATTGTATGTAACATACAACTCGATGTAGTGTATCATACCTCAGCCTCTTTTTGGAGTGAATCTGTTACTCATTCATGAAGGAAAGAACTCTTACCAACGGGTGGTCAAGTAGAGACTGGTGATCTCCTGCGATGTTAGAGGGGTAAGGTGTAGGGGCTCTGTTAAGAGGAGGTGTTCACATATTTTCTTACTATACTTAACAC;SVTYPE=TRA;CHR2=2;END=110347592;SVLEN=0 GT ./. E612490 contig1 size700 25 cov5.39 123 16 51 14 56.8571428571429 26 4 54.75 4 54.75 112 0 0 0 0 42 0 0 0 0 4 0 17 0
6 65298377 N . <TRA> 40 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACCCTCTAAAGACTAGAGATCAATTCAAAGGACTGGCTTTAGCCTCCAGCTACTGAACAGCTTTGGTTAATAAGAAGCACCTGCAGAAGACTAGAAGACAACAGGAAAGGGGTTGTCTAGTGTTTTTTTCTCTGTGTTGTCTTTTTTTTTTTTTTTTTTTTGAATTCCGTGTAAACAAAAACACGCAGTATTTAGCCTTTTTGGTTTTATTTTTGTTTGTTTAATAGAAAAGGGGGGGTTTTTTTGTTTTCCTTTGTTTG;SVTYPE=TRA;CHR2=15;END=20942026;SVLEN=0 GT ./. E4105744 contig4 size260 2 cov1.16 151 28 43.9642857142857 20 60 45 0 0 0 0 277 0 0 0 0 82 0 0 0 0 56 0 51 0
6 69947981 N . <TRA> 1 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCCTATCTTCTGTCTTACTCTCTTTCTCTGCCTGTCTATCTGTCTGTCTCTCTCTGTCTCTCTCCCTGCCTTTCTGTTTCTCTCTCTCTCCCTCTCTCGCTCTCTCTGTCTTTCTCTCTTTCTCTCTGTTTCTCTGTCTCTCTCTGTCCGTCTCTGTCTTTTTCTGTCTGTCTGTCTCTCTCTTTCTTTCTGTCGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTGTCTCTCCCTCTCTGGGTGTATCTTTGGTCTTGGTCTCCTTCTCTTCCTTTCCGTCTGTCTGTCTGTCTCTCTCTCTCCCTGTCCCTCTCTCTTTCTGTCTGTTTCTCTCTCTCTCTCTCTC;SVTYPE=TRA;CHR2=7;END=8031725;SVLEN=0 GT ./. E76592 contig1 size355 3 cov1.28 239 638 0.105015673981191 0 0 79 213 0.0516431924882629 0 0 274 1098 0.388888888888889 0 0 75 376 0.526595744680851 1 40 38 1 15 1
6 76487192 N . <TRA> 3 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCCAAGTGTGTTAATACACATTTGTGGTCCCATCTGCTCAGGAGGCTGAGGCAGGAGAATTGCCTGAGCCTGAGTGGTCAAGGCTAGAGTGAGCTGTGATTATGCATTGCATTCCAGCCCAGGTGACACAGTGAGACCCTGTTTAAAGAAAAAAACAAACA;SVTYPE=TRA;CHR2=12;END=70997975;SVLEN=0 GT ./. E3656124 contig1 size162 2 cov1.86 441 36 1.61111111111111 1 58 143 15 0 0 0 799 66 10.5606060606061 0 0 171 8 11.75 0 0 3 0 35 1
6 95008249 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAAAAAGGAAATAAAATAAGACAAAAAGAGAAAAAAAAGAAAAGGAAGGAAGGAAAGAAGGAAGCAAGAAGAAGGAAGGAAGGAAGGGGAAGAAAAGAAGAAGGAAGGGAGGGAGGAAAGAAAAGAAAGAGAAAAAAGAAAGAAAGAGAGAAAGAAAAGAAAGAAGGGAGGAAGGAAGAAAAAGAAAGAAAAGAAAGAAAAAAGAGAAAGAAAGGGAAAATCTAAGAGTAAATCTTGATCTAGGAAAGCCTTCTTAGATACAACAGCAAAAGCACAAGTAGGT;SVTYPE=TRA;CHR2=11;END=69782213;SVLEN=0 GT ./. E1541643 contig4 size285 2 cov1.06 121 12 60 12 60 39 1 60 1 60 127 1 18 0 0 46 0 0 0 0 0 0 9 1
6 96918879 N . <TRA> 8.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAACACATACACATACACACATACTAACACATACACACACACTAACACATACACATACATATATACAAACATACACATACACACATACAAACACATACACACACACATACACATACACATACAGATATACTAACACATACACACACACACATACTAACACATACACATACACACATACTAACACATACACATACATATATACTAACACACACTAACACATACACACATACTAACACACACACACACTAACACACACACACACTAACACATACACATACACACAA;SVTYPE=TRA;CHR2=1;END=5220237;SVLEN=0 GT ./. E216809 contig14 size285 2 cov1.06 136 0 0 0 0 42 0 0 0 0 195 1 27 0 0 78 0 0 0 0 21 2 22 2
6 105398392 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTAATAAAATAAATGAATGTTAGAATGTGTGGGAAAAGGCAAAGTAAAACAAAAAAAAATTTTAAGAAAGAGAAAAAGGATAAATAAGTGTTGCATTTTTAATTATTTGCAAAGCCACTAAATCTTTGGTGTTTTTTTTTTTTTTTTTCAATTTTTTGTTTAATTAATGTTTTAAAAGATCAAGATCGCTAGAGGCATATGAGAACCTGACAGCACTCAGGAATTCTCCATCCTTTCTACTTTGGCAAGACAGGTACCAAGTCCTCCTATACTTCGTCCT;SVTYPE=TRA;CHR2=1;END=200208314;SVLEN=0 GT ./. E1596017 contig1 size281 4 cov2.15 107 1 60 1 60 55 0 0 0 0 179 15 60 15 60 44 1 60 1 60 0 0 0 0
6 107380286 N . <TRA> 57.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAGAGGATAAGGGGGAAGAGGGGTGGTTACAAGAGGTCGGGAGGGGAATGGAGGGGGGCGGGGTGGGGTGGGGGGAGATGGTTAATGGGTACAAAAAATTAGGGGCTGGGTGCAGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGACGTGGCAGGAGCGTCGTGTAGGGAAAGAGTGTAGATCCCGGTGGTCGCCGCATCGTTAAACAACATCTCTATTAAAAATATAAAAAATTAGCCAGGCGTGGTGGTGGACCCCTATAATCGCAGCAATTCA;SVTYPE=TRA;CHR2=14;END=91913932;SVLEN=0 GT ./. E3393029 contig1 size282 2 cov1.07 100 1 60 1 60 30 0 0 0 0 93 10 60 10 60 41 0 0 0 0 0 0 0 0
6 134724037 N . <TRA> 23 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTTGTTTGTTCCCTTCCTCCCTCCTTTCCTCCTTCCTTCCCTCCTTCCCCCCCTCCCTCCTTCCTTCCCTCTCTCTCCCCCTTTCCTTCCTTCCTTCCTCCGTCCCTCCCTCCCTCCTTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCCCCTTTTTTTCTTCCCCCCCTGCCGCTGCCACCTCCCGCGTTTTTCTT;SVTYPE=TRA;CHR2=10;END=8339288;SVLEN=0 GT ./. E189093 contig1 size286 2 cov1.06 105 1 40 1 40 34 0 0 0 0 105 1 59 1 59 28 0 0 0 0 3 0 4 0
6 138774182 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTCCATGTTGGTAAGGCTGGTCTCAATATCCTGACCTCAGGTTATCCGCTCTCTTCGGCCTCCCGGGGTGCTGGGATCGCAGGCGTGAGCCACCGCGCTCAGGCCAATTTATTAATCAGACAGGAATAGGTCGGCCTGGTGTTTTACATACATCAGTTAGCTCAAGTTCACTGATGATGTTGGTCAAACTTTCCAAGGCTTGCTGAGTTTTAGAAATTATTCAATCATTTGCTTACAGGGACACCTAGTGGTTCAAAATACTACTAAGTTAACCCAAGTTATTACACACTGGATATTCAATGAAGATCAATTAGTTTGGTTATTGGTGAATGATTTTTCTCCCTTTTGAAAAATAATAGCCACAAATATTTTGATGAGGAAAGGGGACAGAAAATGCACTAGGACATATTTTACAAGTATTTTAACCTCTTATTTTAACAAAAATCTCCCAGGAGGCACAATATGGATTAATTCTGTTGATTCTTACTCTGTGGCCTTTCCAGTGCAAGATTGCGCCACTACACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAGAAAAAAAGAATGAACAATTAAAGTTACTTAATAATATGGATGTGGAAGTCACCTGTTGGCCAGATAATATACCAGAGAAGTATATTATCAGACCTCTTTCTCAAACATCTTTGTCACCAATTTTTCAACAATTTTCCTTCCAAGTCCCTGAATATCCTGCCAAACCATTGGCAGCAGCCCATGAATCAGTATATAATTGCATGTCTGGCCATTTTTCCTTCCAAGAAAGTGCACAACTAGGTGCACTGTCTAAAGGTCTGCTGACTAGGCAGATTTCTCTTCACCATTGTCCTCCAGAGATGTCCCAAACAGAGGCTGTAGTGTTGCAAATGCCCACCATTGTGTAGTGCCTGCATAGTATGCAAAACCATCTGTAGACAGATCCTAGCTTTTAATTTCTCTGTTGACTGGTCATAGGAAGTTCCCTTAAGACCATGCATTCAGTGGGGAAAGAGAAGGCCGTTTAGTAGGAGTGGAGACCATGGCATTTTGACCACTTTTTCATTTAACTTATTTGTGCCTTGGGGCCTGTTCTGGCTCAATCATATATAAACCCCTTGCATTTCATAATGTTGCTGCTGTCTACCTGAAATTTCTGGCCAGGTGGGTCAGATGACACATAGTTCACCATGGGTAGCTGAGGTTGCATGGTAAGTGTTCTGCTAACACCCAACTGCAGACCAATAACTGTTTCTCAAAAAAAGAACAGTTATCTGAGGAGAATGATAGAACTTT;SVTYPE=TRA;CHR2=15;END=23712615;SVLEN=0 GT ./. E2801615 contig1 size1304 75 cov8.68 172 30 46.4333333333333 26 49.6923076923077 34 0 0 0 0 226 1 60 1 60 45 0 0 0 0 47 0 15 0
6 149575303 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCAATTCCATTCCATTCCATTTGATTCCATTCCCTTCCATTGCATTCTACTCAGCTTTATTCCATTCCATTCCATTCCGTTTCGATCCATTACACTCAATTCCACTCTGGTTGATTCCATTGCATTCCATTCCATTCCATTCCATTCCATTCAATTCCTTTCCATTCCATTCCACTCGTGTTGATTCTATTGAATTCCACTCCATTCCTTTCCATTCCATTCCATTCCACTCGTTTTGTTTCGATTCCTTTCCTTTCCTTTTCTTTCCTTTCCTTTCCAT;SVTYPE=TRA;CHR2=10;END=42363498;SVLEN=0 GT ./. E2778609 contig1 size283 2 cov1.07 118 10 0.7 0 0 47 3 0.666666666666667 0 0 44951 1299 5.68206312548114 90 40.2666666666667 14730 431 5.56844547563805 28 38.0357142857143 17 1 9 0
6 167365347 N . <TRA> 20 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATAATTGTAGAGCAAGGATTATTATAATATTGGAATGAAGAGTAATGCTACAAACTGATTATTCATAATATTTGTATACCATCATATCTATAATCTATTACTAGTATAACTATTCTTATTTTATATATTTTCTTTATTATACTGGAACAGCTCGTGCCCTCGGTCTCTTGCCTCAGGACTTGGGTGGCTTACCGCCCACACAAATGGGAGTGGACAGAGGCACATTTGCTGCCTGCGGGGTTCAGAGAAGGTGTCTGTGAGGGATATGGAGCTTTGATCA;SVTYPE=TRA;CHR2=7;END=142014575;SVLEN=0 GT ./. E1126693 contig1 size282 2 cov1.07 122 1 60 1 60 35 0 0 0 0 336 8 7.5 1 60 80 2 0 0 0 10 0 9 0
6 170802311 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGGCGGAGGGGAGGAGGAAGAGAGGAGGAGGGGAGGGGGGGGAGGGGGGGAGAAGGGGAGGGGGAGGGGGAGGGGAGGGGGAAGGGGGGGAGAGGAGGGGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAAGAGAGGAGGAGGAGAGGAAGAGGAGAGGAGGAGAAGAGGAGGAGGAAGGGGAGGAGAGGAGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGAGAGGGGGAGGAGAAGAGCGGAAGAG;SVTYPE=TRA;CHR2=7;END=65564037;SVLEN=0 GT ./. E4217826 contig2 size278 2 cov1.09 75 0 0 0 0 20 0 0 0 0 147 1 0 0 0 41 0 0 0 0 12 1 8 0
7 1357039 N . <TRA> 3.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATGGTGGTGTGCGCCTGTAATCCCAGCTACTCAAAAGGCTGAGACAGGAGAATTGCTTGAATCTGGGAGGTGGAGGTTGCATTGAGACAAGATCATGGCACTACACTCCAGCCTAGCCCACAGAGCAAGACACTGTCTTGAAAAAAAATAAAAACAAAAATAAAGAAAGCTAGCCAGTCATGGGGGTTCATGCCTATAGTCCTAGGTAATTAAGCGGTTGATGCACGAGGACTGCGCAAACCCAAGAGGTTAAGGTTACCGGGAACGATTAGTATG;SVTYPE=TRA;CHR2=13;END=99353921;SVLEN=0 GT ./. E202835 contig1 size278 2 cov1.09 311 76 4.67105263157895 0 0 76 21 3.47619047619048 0 0 125 17 0 0 0 31 6 10 1 60 5 0 4 0
7 6012115 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAACTGGAATGTTCTACAGTTCACATCCTGAGGAAACCAAATCACAGCATTAAATTATGGGAAATCAAACTCTTTTTGTTCCCCTGCAAGGTCACATCCTGAGGAAACCAAATCACAGCATCAAATTATGGGAAATCAAACTCTTTTTGTTCCCCTGCGAGGACAGCATTTTGCGACCTTGGCCGCACAGAGGAATGTTTCAAATAGTGACCCCTGTCCCATCCAGTCC;SVTYPE=INV;CHR2=7;END=6791873;SVLEN=779759 GT ./. E151091 contig3 size230 2 cov1.31 130 37 0.72972972972973 0 0 19 0 0 0 0 177 29 8.75862068965517 5 40 37 0 0 0 0 43 1 44 0
7 6012181 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAATGCTGGCCGCGCAGGGGAACGAAAAGAGTTTGATTTCCCAGAATTTGATGCGGTGATTTGGGTTCCTCAGGATGTGACCTTGCAGGGGAACAAAAAGAGTTTGATTGCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGACCTTGCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCCGTGATTTGGTTTCCTCAGGATGTGAACTGTAGAACATTCCAGTTACTGGCCTTGAATGGTTCTGGGAATA;SVTYPE=INV;CHR2=7;END=6791939;SVLEN=779759 GT ./. E151091 contig5 size269 2 cov1.12 155 35 0.771428571428571 0 0 20 0 0 0 0 234 23 8.1304347826087 4 40 48 0 0 0 0 43 1 43 0
7 8192253 N . <TRA> 32 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCACCACCACCACCCCCTCCCCCACCACTACCACCACCACCACCACCTCCTCCACCACCACCACCACCACCACCACCATCTCCTTCATCACCACTACCCCCACCACTACCACCATCACCTCCTCCACCATCACCACCACCACCACAACCACCATCTCCTTCATCACCACTACCCCCACCACCACCACCACCACCACCTCCGCCACCACCACCACCACCTCCACCACCACCACCACCACCACCACCACCACCACCACCCCCACCACCACCCCCATCCCCTCCC;SVTYPE=TRA;CHR2=2;END=46590098;SVLEN=0 GT ./. E2799639 contig1 size283 2 cov1.07 351 15 37.0666666666667 9 54.5555555555556 99 1 22 0 0 183 10 19.4 3 60 70 0 0 0 0 8 3 15 6
7 20824948 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCAGGTGCGAGGAGGCGCCGCTGCTGAAGGCCGAGTGACTCAGGCCCGAGTAATCCGAGTTGTAGCCTCCGAGCGGCGAGTGCAGCGAGGTTTGGAGCCCCCCGGCGGCAGGGTGCAGCGAGCCGGGCAGCGCAGCCGCGCTGTTCGGGTTCTGCACGTCGATCCAGCCGGCCCCCACGTCCCACCAGCTGGAGGCGCCGGCCGAGCCCACCTCGCCCGCAGCACCCAGGCCCGGGTGCGAGGGCTTAAACCACGACTCGTACGGGTGCGCCATGCCCACCCGCGGGTAGATGCCCTGCAGCCCGTCCACAGAGGTGTGCACCTTGGAGATGAACACCGGCTGGTGGGAGCCGTCCTGCGAGTGCGCGGAGGAGCCGCCGCAGCTGAACGAGTCGGACACCAGGGCCGCGGCAGCCGCGGCTGCTGCCGCGGCCGCCGCAGCCGCCGAGGACGAGCCGCCGTTCCTGGAGGCCCCGGACACGCCGAAGCTTGAGAGACTGGAACCCACTACGTTGCAGCTGGCGGAAGAAG;SVTYPE=DEL;CHR2=7;END=20825107;SVLEN=-159 GT ./. E1060653 contig1 size532 15 cov4.26 99 14 59.3571428571429 14 59.3571428571429 33 1 60 1 60 81 11 60 11 60 9 0 0 0 0 426 119 432 131
7 21703767 N . <TRA> 41.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCATAATGGCTGCACTAACTTACATTCCCACCAACAGTGTACAAGGATTCCCTTTTTAAGCACTTCAATTTACATACCCAATTCATCAGTTTAATTTCAGTTATTATATCTCAATTTCCCAAAGTTTTTTTTTTTTTTTTTTTTGCTTTTTTTAAAAATTTATTGTCAACTGTTTTTTTTTTTTTGTTTTTATTCTTTTATTTTTTTTTTTTTTTCTAATATGTGTTT;SVTYPE=TRA;CHR2=1;END=47318325;SVLEN=0 GT ./. E1544637 contig1 size229 2 cov1.32 191 24 59.1666666666667 24 59.1666666666667 47 0 0 0 0 123 2 60 2 60 51 1 6 0 0 0 0 6 1
7 39070144 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTATAGAAATGCTAATCCTTTTTATATATTGATTTTATATCCTAAAATTTTGCTAAAGTTGTTTATCAACAGAAGAATAAACGGGCCAAGACTATGACTTTTTCTATATATATGTATATGTATGTGTGTGTATATACATATATATATATATATATATATATATATATATATATATATATATATATATATAGTATTTTTTGAAAGTTCAATACAGGAGATTAGCAAAAACTGTTCCTTTGAAAAAGCTAATAAATAATCAGATCTCA;SVTYPE=TRA;CHR2=9;END=76501453;SVLEN=0 GT ./. E3770773 contig1 size267 2 cov1.13 78 5 30.8 2 58.5 28 1 60 1 60 140 10 60 10 60 59 1 60 1 60 0 0 0 0
7 45292457 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAAAGAGACAACCAGAAAGAAAAAGAGAGACACACAGAGAGAGAGAGCGAGAGAGACAGAGAGAGAGAAAGAGAAAGAGAGAGACAGAGATAGACAGAGAGACAGAGACAGAGAGAGAAACAGACAGACAGGGAGGGAGGGACGGAGACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGGCAGCCAGCCAGAGAAAGAGAGAAAGACAGAAGAAAGGCACAGACAGAGAGAAAGGCACAGAGAGAGACAGAGAGACA;SVTYPE=TRA;CHR2=18;END=53647413;SVLEN=0 GT ./. E2495324 contig1 size271 2 cov1.11 414 9 26.6666666666667 4 60 134 4 0 0 0 164 4 11.75 1 47 64 0 0 0 0 7 0 4 0
7 55103982 N . <TRA> 59 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCCAGCTTTTAGCCGACTTTAGAGCAGAAGAAGTCTCTTTATTTGGTCTAAAATTTTCGAAGAATATCTCTGATGCCTTCCTTCTATGGAATAAATGGTTTTCTTTTCTTTTCTTTGTTCTTTTTTTTTTCTTTGTTTTTTTTTTTTTCTTATTTTTTTTTTTTTGCTTTGTTTGTTTTTTTTTTTGTTTGTTTTTTTTGTTGTTGGGGTTTTGTGTTCTTTGTGTGTGTGTACCACTCTACCCATCCTATATTTATTGTCCTGTATTCGGTCTGTTCTGCCT;SVTYPE=TRA;CHR2=4;END=100031730;SVLEN=0 GT ./. E2764855 contig1 size286 2 cov1.06 144 24 59.8333333333333 24 59.8333333333333 48 1 60 1 60 151 0 0 0 0 33 0 0 0 0 3 1 1 0
7 55955411 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCGGCGGCGTCAGGGGGCGGAGCCTGCCGAAGCGCCCTTTGTCTGCGGAGGTGAGTGCGCGCCGGGAGGAGGCGGAGGCGGGAGGCGGCGGGCGGCGGGCGGCGGGCGGCGGGCGGCGGGCGGCGGCGGCGGCGGGAGGCGGCAGGTGGCGGGAGGGGCGGCCGCTGTCCCCGCTGTCCCCATTCCTGTCACCCGCCCCGTGTCCCTTTCAGATTTTTGGTCTTTTATAGGAAGGTCTTACCCGTTCCAATATT;SVTYPE=DEL;CHR2=7;END=55955542;SVLEN=-131 GT ./. E2550414 contig1 size255 4 cov2.37 8 3 44.6666666666667 3 44.6666666666667 7 0 0 0 0 4 2 37 2 37 2 0 0 0 0 527 131 541 128
7 56087686 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTAACACACCAATAGCATCCAGTAGAGTGTATATAAGGTACAACAAATAATTATTAGAAGAACCAATCAGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAAGCCAGGAGTCTGAGACCAGCCTGGCCAACATGATGAAA;SVTYPE=TRA;CHR2=6;END=34332592;SVLEN=0 GT ./. E485938 contig1 size178 2 cov1.70 111 1 5 0 0 54 0 0 0 0 155 15 52.4666666666667 14 55.8571428571429 32 0 0 0 0 2 0 0 0
7 56881746 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACGTGTGCTCTTCCGATCTAGACCTGGGCCTGTACAGGCCACCGGGAGGCAGGAGGTGGAACTGAGGAGCTTCGCTGGAGAAAGTTCAGGGTCTACAAAAGCCGGCGGGAGCTGGGCAGGCACTGAGTCCAAAGAGGTTGTTGGGAGGCAGAGATCGGAAGAGCGTCGTG;SVTYPE=INV;CHR2=7;END=63213812;SVLEN=6332067 GT ./. E2305708 contig3 size170 2 cov1.78 168 2 0 0 0 47 0 0 0 0 136 2 17 1 34 35 0 0 0 0 4 0 6 0
7 57471578 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGCTCACGCCTGCAATCCCAGCACTTTGAGAGGCTGAGACGGGCGGATCACTTGAGATCAGGAGTTCGAGACCAGACTGGCCAACATGGCGAAACCCCATCTGTACTAAAAATACAAAAATTAGCCCGGCAAGGTGGCGGGTGTCTGTAATTTCAACTACTGGGGAGGCTGGGGCAGAACAATTGCTTGAACCCAGGAGGCGGAGGTTTCAGTGAGCCCAGATCGAGTCAGTCACTGCACTCCAGCCTGGGCTACAGAGTGAGACTCCGGGTCAAAAAAAGAAAAAAGAAAAATGGATTCAAAGAATTATCACTGTTAAGTTCCACCAGCAAATTATTAAACGTGGTTCCAAAGGGATATTTAAAAAGGGAAATTAAGTGTTTCCATGAAGGTCCTATTCACAGCAGAAACGCAGACACTGTTCATGACCTCACCACACAAACTTCCCTTATGTGTTGGGAGGGACCAAGGGGCTCTCTGGCCCTGCACCTGCGTTAATTACGGCCGGGAGGTCCACACTAGGACCCCAAGGTCTGGGAACCAGCCTGGATCGGGGGCAGAGAAGCGGTGGATGTGGCTCCCAAAGTGTCTTAGGTGCTCCCTTCCCTGTGGCTGTTTCCTGACTGGATGCAGCAGGGTCAGGCCTTTCGCTGTGACGTTTTCAACTCTTTGTCAGAGTGGCAGGAGCGTCCCTGTGAGAGGCGAAAATACAAACCAGTAAATTATCGAATTGTTTTAACTTTAGATTATTCTCTATATTAAGTATTCTTGTCTAATGTAAAGTTTGAAAATTATAGTGCCTTTGTACTTTCTCGTGGGAATTCTCTGAGGTTTAGTTAGACTTGATTTTTGAATACTCCCTCACACTTATTGCATTTGAAAAGTTTCCCTGTGGAAGAATTCTTTATGAATTCTGGTTATTTCTAAGGTTTATATTTAAGATAAAACTCTATCTACATCCATTACATGTATAGTGATCTTCTAGTATGAATTATCTGATGTTGAGTAAAGTGTGAACAGTTGTTAAAGGCTTTGCCACATTTTTTACATTGTATTTAAAACAGCACATAGAAAGCAAATCTGTTTTATTCATTAAGACAAATTAATAATGTTTTCCATTTTAAAGAAAGTGTGAAGGATTTTTTTTTCTAGCTAGTCGTCATCCTTTATATAGACAGCTTAGGGGTCCCTGGGTGCTGGAGACAGGGGTCCCTTGCCCACTCATATCTAAGAAGGTTCTGGTTGGCATTCATTCATTTAACACAGAAATATTAAGCAATTAACTTTGTGTGGTTACTTTGCTAGAACCTTGGCATAATTCAATGACTACAGCATACAGATCTCTGGGCCTCAATTCTATTCAAGGAGTTAGACACTCCTTCAAAGTAGATGGACATCATAGCAGGTCATGTCCACGGAATGTGAGATGAGATGCCCAATGGCCTCTTCTAGGTAGGGAGCCATCCGCTTAGATTCT;SVTYPE=DEL;CHR2=7;END=57496109;SVLEN=-24531 GT ./. E1293175 contig1 size1478 98 cov10.01 143 63 52.9206349206349 57 56.5964912280702 45 0 0 0 0 79 73 58.9315068493151 73 58.9315068493151 39 0 0 0 0 33 0 25 0
7 57546769 N . <DUP> 4 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAATGGAATTGAATCATCATGGAATGGAATCGAATGGAATCATCATCGAATTGACTTGAAAGGAATCCTCATTGAATGGAATTGATTGGAATCATCATTGAATGGAATCCTCTTCACATGGAATCAAATTGAATCATCATCAAATTGAATCAAAAGGAATCATCAACAAATGGAATTGAAAGGAATCATCATCGAATGGAATCGAATGCAGTAATCATTGAATGGCATCAAATGGCATCATCATCA;SVTYPE=DUP;CHR2=7;END=61740290;SVLEN=4193521 GT ./. E3288052 contig2 size246 2 cov1.23 1164 16 8.625 1 60 372 2 3.5 0 0 476 13 20.4615384615385 5 46.4 139 9 18.3333333333333 3 54 8 0 13 0
7 57685614 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTGGTGTTACCTGTGCCTTGATTTCTACCTCAGCCTGCTGTACACCTGGGGCCTGGGTGTCCACCTGTGAGCCTGATGTACACCTGGAGTCCAGTGTCCCCTTGGTTACTAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG;SVTYPE=INV;CHR2=7;END=57899799;SVLEN=214184 GT ./. E1585364 contig2 size192 2 cov1.57 226 0 0 0 0 48 0 0 0 0 314 2 13.5 0 0 79 2 0 0 0 19 0 15 0
7 57949286 N . <DEL> 6.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAGAAGTTTCTAAGATTGCTTCTGTCAAGATTTTATATGAAGATATTTCACTTTCACCTTAGGCCTCAAGGTGCTCGAAATGCCCCCTGGCCGATTCTACAAAAGGAGTATTTCAAACCTGGTACATCAAAAGAAAGTTTCAACTCTTTGAGATGAATGCACATATCACAAACAAGTTCCTCAGAAAGCTTCTGTCTAGTTTTTATGTGAACATATTTCCTTTTCCACTGTAGGCCTCAAAGCACTCCCAATGTCAGTTTGCAGA;SVTYPE=DEL;CHR2=7;END=58038450;SVLEN=-89164 GT ./. E2318824 contig1 size266 2 cov1.14 322 124 14.991935483871 9 44.3333333333333 98 34 13.2352941176471 1 60 578 17 8.11764705882353 3 44 154 2 0 0 0 4 0 5 0
7 57958883 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCGTTTTCCAGGTTCTGCAAGTAGATATTTGGCGAGTTTTGAGGCCCATGGTGGAAAAGGAAATACCTACACATAAAAACTAGGCGGAAGCACTCTCAGAAATATCTTTGTGATGAGTGCATTCAACTCACAGAGTTGAACATTTATGTTGATAGAGGAGTTTTAAAACACTCTTTTTCAGGAATCTGAAAGTGGATA;SVTYPE=DEL;CHR2=7;END=62000668;SVLEN=-4041785 GT ./. E638240 contig2 size199 2 cov1.52 1504 30 0 0 0 497 10 0 0 0 4947 877 14.0410490307868 138 43.2608695652174 1525 296 12.777027027027 38 44.1842105263158 13 0 12 0
7 58037636 N . <DUP> 4 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTTGCAGATTCAACAAAAAGAGTGTTTCCAAACGGCCCAAACAAAAGAAAGTTTCAACTCTGTGAGAGGAACGCACACATCACAAAGTGGTTTCTCAGAATTTGTCTTTCTAGATTTTATGAGAAGATAAATCCTTTTTCACCATAGGTCACAAAGCCTTCCAAATGTACAAATGCAGATTCGACAAAAAGAGAGTTTAAAAACTGCTCAATCAAAAGAAAGGGTTAACTCTGTGAGATCAATACACAAATCACAAAGAAGTTTCACAGATTGCTTCTTGCAGATTCTACAAAAAGAGTGTTTCCAAAATGCTCAATCCAAAGAAAGGTTCAAATCTGTGAGATGAACATACACATCACAAAGAAGTTTCCCAGAATGCGTCTATATAGTTTTTACGTGAAGATATTTCCTTTTCTACCATAGGCCACAAAGCGCTCCAAATATCCACTTGCAGATTCTACAAAAAGAGTGTTTCCAAACAGTTCAATGAAAAGAAAGTTTCAATTCTGTGAGATGAACTCACACATCACAAAGAAGTATCTCGGAATTCTTCTGTCTACCTTTGATGTGAAGATATTTCCTTTTCCACCATAGGCCTCAAATCACTCAAAATCTCCACTTGCAGATATTACAAACATAGATTTTCAAAACTGCTCCAACAAAAGAAAAGTTTAAATCTGTGGGATGAATGCAAACATCACTAAGAAGTTTCTCAGATTTCTTCTGTCTAGATTTTATGTGAAGATATTTCCGTTTCTACTGAAGGCCACAAAACTCTGTCTAGGATATTTCATATTCCATT;SVTYPE=DUP;CHR2=7;END=58044792;SVLEN=7156 GT ./. E3038266 contig2 size803 33 cov6.21 941 21 15.9047619047619 7 37 312 8 15.625 2 35.5 202 14 0 0 0 52 8 0 0 0 9 0 8 0
7 61229546 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTGCCTTCAACTCACAGAGTTGAAGCTTCTTTTTGATAGAGCAGTTTTGAAACACTCCTTTTGTAGAATCTGCAGGCGGATATTTAAGTACTCTTTGAAGCATTCTTTGGAAACGAGAATACCTTCACCTAAAACCTAGACAGAAGCATTCTCAGAAACATCTTTATGATGTGTCCATTCATCTCACAGAGTTGATAGAACAGTTTTGATAGAGCAGTTTTGAAACACTCCTTTTAAAGAATCTGCCAGTTCATATGTGCAGTGCTTTGAGGCTTATGGTAGA;SVTYPE=DUP;CHR2=7;END=61242897;SVLEN=13351 GT ./. E2759495 contig1 size286 2 cov1.06 298 2 0 0 0 81 0 0 0 0 1600 9 12 1 40 454 1 37 1 37 5 0 5 0
7 61978563 N . <DUP> 9 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGCCTGTGGTACAAAAAGGAATGTCCTCACATAAAATCTAGACAGAAGCATTGTCGGAAACTGCTTTGTGATACCTACCTTCATCTCTCAGAGTTGAATATTCCTCTTGATGGAGCAGTTTTGAAAAACTCTTTTTGTTGAATCTCCAAGTGGATATTTGGACCTCTTTGTGGCCTTCGTTTGAGACGTGACTGCTTCATACAAAAGTAGACAGAAGAATTCTCATAAACTTCTTCGTGATGTGTGCTTTCAACTCGCGGAGCTGAAGCTTC;SVTYPE=DUP;CHR2=7;END=61995484;SVLEN=16921 GT ./. E3470672 contig1 size273 2 cov1.11 17573 1789 18.4449413079933 337 44.7715133531157 5005 572 18.8374125874126 110 43.9363636363636 599 33 6.90909090909091 3 54.3333333333333 174 15 0.466666666666667 0 0 4 0 4 0
7 62665125 N . <TRA> 3 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATACACAACACACACTCACATACACACAACACACACACATACACACCACACACACACACATACACACAACACACACACACACACCACACACACACACACACACACCCCAACAACACACACACACACATACCCAACACACACACATACACACACCACCCACCCACACACACACACCCCACACAACTACCCACAACACACACCTAAACACACCCCACCCACCGCGGCACACTCACATATACACACCACACACACACATATACACACAACACACTCATACACAACACA;SVTYPE=TRA;CHR2=4;END=24110622;SVLEN=0 GT ./. E2743770 contig1 size285 2 cov1.06 152 1 60 1 60 36 0 0 0 0 79 3 40 2 60 51 0 0 0 0 8 0 6 0
7 63211754 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAGCTCCGGCCCCTCCGCCGCTTCGGCAGGCGCAGCTCCCGTAAGCCAGCGGCCACCTCCGAGACCTACAGCCCATCCCTACCCGACGCCCTTCCCAGCTCAGCTCCGCCCTCCCGGCGGCCTCTCCAGGCCCAGAAGCTCCTCAAGTCGGCCTCTCCAGACCCACTTGCAGCCTCCCGGCGTCCTCTCCGGGCCCAGCTCTTCCTCCCGGCTGCGTCTGCAGGCCCGGCTCTCGCCTCCCGGCGGCCTCCCGGGACCCAGTCCCTGCCCGCCTCCCCGC;SVTYPE=DEL;CHR2=7;END=63219190;SVLEN=-7436 GT ./. E2449077 contig7 size282 2 cov1.07 46 0 0 0 0 12 0 0 0 0 306 2 18.5 0 0 65 1 24 0 0 3 0 3 0
7 64751648 N . <TRA> 15 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTAGCTTTCTATGTTCTTCTTTAGCTGAATGAGCATCTTTAAGCTAGGTGTTTTAGCCAGGCACAATGATATGTGTGTCTAATTCCAGCTACTTTGAAAGCTAAGGCAAGGGGATTACTGTATTAATAAATTCTCATGCTGTTAATAAAGACATAACCAAGACTGGATAATTC;SVTYPE=TRA;CHR2=11;END=27905258;SVLEN=0 GT ./. E1239992 contig2 size175 2 cov1.73 488 73 19.2054794520548 21 39 158 19 25.3684210526316 10 38.8 118 25 0.96 0 0 47 10 1.5 0 0 4 0 3 0
7 65045619 N . <TRA> 2 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAAAAGAAAATAGCCTTATTCTATACATAATAAACTCAAGATGTGTTACAAATTTATATGTGAAATCCAAAATACTATAATATTTAAGGAATAGCTCAGTAGAATAACACTAAAATTTATTTTTTTTTTTTTTTTTTTTAAATTTATTTTTTTATTGATGATTCTTGGGTGTTTTTCTGTGGGGG;SVTYPE=TRA;CHR2=17;END=64266121;SVLEN=0 GT ./. E4364032 contig3 size188 2 cov1.61 244 43 19.2325581395349 12 53.25 46 12 28.25 6 53.3333333333333 126 5 0 0 0 50 2 55.5 2 55.5 8 0 6 0
7 65564139 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGGCGGAGGGGAGGAGGAAGAGAGGAGGAGGGGAGGGGGGGGAGGGGGGGAGAAGGGGAGGGGGAGGGGGAGGGGAGGGGGAAGGGGGGGAGAGGAGGGGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAAGAGAGGAGGAGGAGAGGAAGAGGAGAGGAGGAGAAGAGGAGGAGGAAGGGGAGGAGAGGAGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGAGAGGGGGAGGAGAAGAGCGGAAGAG;SVTYPE=TRA;CHR2=6;END=170802311;SVLEN=0 GT ./. E4217826 contig2 size278 2 cov1.09 213 3 18.6666666666667 1 51 62 0 0 0 0 75 0 0 0 0 20 0 0 0 0 8 0 12 1
7 66028234 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAACACTGTAATTTAAATGATATTTTAAGTGTTTATACTGACCTGCAAAGTTTGTTTGCTTGTTTTGAGATGAAGTCCCAATCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCCCACTGAAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAATA;SVTYPE=DUP;CHR2=7;END=129038234;SVLEN=63010000 GT ./. E3199553 contig2 size189 2 cov1.60 163 7 2.57142857142857 0 0 56 3 2.66666666666667 0 0 196 7 1.42857142857143 0 0 39 1 0 0 0 7 0 5 0
7 69490764 N . <TRA> 39.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGCGGAGGGGTGGGGGGCAAATCCGGGCCAAGCACAATTCCCCACCCGGGGCTCACGCCCCTCCCCCCCCTCGCCCCCCGGGGCCGCTGGGCCAACAGGCCCCCCCCCCCCTCCCCCGCAACTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAGGATGCTGAAGGAGCTGAGGCAGTGCTGAAGGATGTTAAAAGCACACACAGTGGAGAGCTTATTGTTGTTCCAAGGCCTAATTGGAGATCTAGGTTGGCATTTCCTACAGCTTTCAAAGTGTACAACTAAA;SVTYPE=TRA;CHR2=19;END=15418927;SVLEN=0 GT ./. E477040 contig4 size286 2 cov1.06 132 13 57.1538461538462 13 57.1538461538462 44 1 60 1 60 39 0 0 0 0 16 1 40 1 40 0 0 2 1
7 77981839 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAATAAATGGAAAAATGGCATCTATTTTACTTGGAGCATTTTTTAAAAACAGAATAATTGAATCCTGCCTCTTGAAAGATTTCTTCCCAATTCTAACACTTAAGTGATAATTTTCCTTCTATAAACGTCCATTCATTATTTCAGGTTTCTCCTGAAAAAAAAATCACACTTGCTTTTATGTCAAAACTAAAGAAATAATTTTTGAATTTTTTTTTACTTGTAATGTATATATCATCATGTTCACTGTAAGTTGAATGTTAATAGCCTCTTTCCTCTGTTCTTTGTATTCTCTGAGGTTTTATTTTTAGTTTTCAATGGGTAATCTCACAATGTCACAGCTCTCCTGACTTTGCCACATCCAGACCTAAATCTGCCAGATCTCCTTTGCATAATGAACAATGTGAATATTTCTCGACATGTACAGCAGTTAAAACACCAAGGTACTGCAGGGACAGGTGCAATGCAAATACACAGATGGAGAAACTGAAAGACTTCATTAACGTCATATAATCTCACTAATGATCAACTCTTTAAGGGAAGCTCTTTCTTCAGGGATAAAAGGAGAGAAAGCAACTGGAACAATTCTGTATAAAGGAATCGCTGTTTCCCCAGGCTCTTGGCATTAGGTACCTGCCAGAATGGCAAAAGCTTTGTATCTGTTCATTTCTTTCTTGCAATAATGTCCTTGGGTAGTTCTTCCTCCTAGTCTTTTCAGATGATATCTTAGGCCTCTTCTCTTTTGCTCTGTATGTGTCCTCAGGTGAGCTAGTCAACTTGCCCAAATGTCACTTC;SVTYPE=DEL;CHR2=7;END=78082249;SVLEN=-100410 GT ./. E3037666 contig1 size793 55 cov10.47 145 42 57.7857142857143 42 57.7857142857143 35 0 0 0 0 117 50 56.7 50 56.7 44 0 0 0 0 19 0 25 0
7 78190207 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAGAGGTGAGAGTTACAGATTGGTTTTGAGGAGTATTCTGGAGGTGATAATTGAAGCCATGAAAGTGGATAGAGTTTCCAAGGGAGAATGAATAAAATAGCATGGAAAAATGTCAGATCTGATGTGGCAAAACGTAATCATTGGAACACTTAAATTATCATCTTCTAAGATAATTTATGATGTAAACGTTAATCTAAATACTTTAAAATTTTTTTAAAATTATGTTTAAAAACATGCAAAAAATTATTTTGTAGTTTCAAAAGACAGGTGTTACAGAAATTGAACCTTTATTTTTATGAGAGCATCAACAATAATATACAACTAGAAATTATTTGTGGGCTTCAGCGGTAGGCAGAGCTGGGTTTGAATTTCTGTTCTTCCCTTTGATAGCCTTTTGTCTGCTTTCTGATAGCATGCTCTTAACCATTACACAATCATCCTGCTCTTATAAAGCTGGATTATCTGCTGAGAGCATCAGGAATTGACATCTAGGATAATGAGAGAAGGCTGATCATGGACAACATATAGCCTTTCTAGTAGATGCAGCTGAGGCTAAAAAAGTATTTTAAATCCTTAAATTTTATTTTTGTTCTCTGCATTTGAAATCTTTATCAACTAGGTCATGAAAATAGCCAGTCGGTTCTCCTTTTGGTCTATTAGAATAAAATCTGGACTGCAACTGAGAAGCAGAAGGTAATGTCAGAATGTATAATATGCCAGGGAAATTTGATTTTGGATAAAAATGAATAATTCCTATTGAAAACATTTTTTAAGATTTGAAGTTATTATTTTCTAAAATCAAGTTTTATAACTCATCTTTGGGGGCTGCAAAAACAATTTTTTTCCATAATCATGTTTAATGGCTTTCCCTGAATTGGTTATTTTGTTTAGCTGAGTCACATTTTGCAATATTTCCTGCTGCTTTTATGCTATAAAATATAAACCACCTACATCTAGTATGCATAATATTGTCAAGTTAATGTTTCTATGAGAACCTTAACTTTCAATATTCTGACTTTTATGTGCTTAACCCTTGTGAATTAAAAGTGCATTAACATGGTTTTTGGCAATCAATTTGTTTTTCTGTTTATTTAGAACACACTCCAATCATTAAGAAAAAAATCA;SVTYPE=DEL;CHR2=7;END=78257685;SVLEN=-67478 GT ./. E3434697 contig1 size1127 39 cov5.23 148 33 58.0606060606061 33 58.0606060606061 37 0 0 0 0 137 32 58.09375 32 58.09375 44 0 0 0 0 20 0 19 0
7 80867125 N . <TRA> 2.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCCTTCCTTCCTCCCTTCCTTCCTTCCTTCCCTCCTGCCTTCCCTCCCTCCTTCCCTCCTTCCTTCCTCCCCTCCTGCCCTGCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTCCCTCCCTTCCCCCTCCCCCCCCTCCCCACTCCCGTCCCCCTCCCCTCCCCTCCCCCCTCCTCCGCTCCACCCCCCCCCCCTCCCTCCCCCC;SVTYPE=TRA;CHR2=6;END=834343;SVLEN=0 GT ./. E3003191 contig3 size282 2 cov1.07 159 0 0 0 0 26 0 0 0 0 148 41 14.8048780487805 8 43.75 32 14 13.2857142857143 2 35 3 0 14 1
7 85844668 N . <DUP> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGCACAGTTCAAGACATATCAGTAAATGTCCCATGTTTAATTCAGAAGCATTTGTATTCTCTGGGTGTTGGAAATAGTCTTCTATAAATGTTATCAGATATAATGATCAATAGTGACAATCAGGTGTTCCATATTCTTTAATAAGGTTTTGTCTAGTTGGTCTGACAGTGCTTTAAAGATTCCAACTATACTTATGAATTTTTCCCTTTAGCTTGCTAGATCATATTTCACTTATTTTGTGGTTCTATTATTATTTATATAGTCAACATGCATTACTAGTCAAAGGGTTAGTGGTGTATTCAAATACAGCTATGCTTTTTTTTTGTAGCCTTGGCAATAGCCATAGGGATGTAAAAACACATTTTGTAGCAGCTAGTGTAGAAACTATGGAGCACTCACCAGTAGTACAGA;SVTYPE=DUP;CHR2=7;END=85853700;SVLEN=9032 GT ./. E1629456 contig2 size413 21 cov7.68 215 24 59.8333333333333 24 59.8333333333333 42 0 0 0 0 211 26 57.3461538461538 25 58.68 40 0 0 0 0 18 0 16 0
7 87441926 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGTCTCGGTGGCGGGTGCCTATAATCCCAGCTACCCACGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAAATGGTGCAGTGAGCCAAGATCGTGCCATTGCACTCTAGCCTGGGCAACAGAGTGAGACTTCATCTCAAAAACAAAACAAAACAAAAAACTTGGTTGGCCTAGTGGCTCAATCCCAGCACTTTGGGAGCCCAAGGCAGGTGAATTGTTTGAGCCCAGAAGCTCAAGACCAGTGTGAGC;SVTYPE=TRA;CHR2=3;END=152896583;SVLEN=0 GT ./. E2951981 contig2 size254 2 cov1.19 392 39 3.17948717948718 0 0 89 7 2.85714285714286 0 0 139 0 0 0 0 33 0 0 0 0 5 0 5 0
7 94641432 N . <TRA> 8 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAGTCTCTCTAAAAGAAAGAAAATACTCTTGTTTGGGAATAGAGCATTGAATAGAAATATGTGTGCCATAGTAAACCATGTGCATATGCAGGGAGGTAAAGACTCTGCTAGAACATTTGTATGTTGCTGTAAAGAAATGCCTGAGGCTGAGCTATTTATAAAGGAAAGAGGTTTAATTGGCTCATGGTTCTACAGGTCTGATAGGATGCATGGTTCTGACATCTGCTTCTGGTGAGAGCCT;SVTYPE=TRA;CHR2=4;END=9973697;SVLEN=0 GT ./. E3059411 contig2 size242 2 cov1.25 163 17 2.23529411764706 0 0 46 4 5.5 0 0 598 25 7.88 0 0 211 5 8.6 0 0 5 0 5 0
7 99038316 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCATCATGTTTCCCAGGGTTGGTCTTGAACTCCTGGGCTCAAGTGATCCTTTTACCTCGGCCTTCGGAAGTACTGGGATTATAGGCATGAGCCACTGCACCTGGCATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTCTTCCAGATTCTCAGGACCCTTTTTCGCTGAAATGTGGACCCGCGGACTTCATGGATTTATAGAACCCTAATACACCTTTAATCACCAGCAAACCCATTTGAAGGGCCCACTCGATCTGGCTGGG;SVTYPE=TRA;CHR2=22;END=28056252;SVLEN=0 GT ./. E862609 contig2 size271 2 cov1.11 86 13 54.8461538461538 13 54.8461538461538 24 1 60 1 60 27 0 0 0 0 11 0 0 0 0 0 0 0 0
7 99273303 N . <INV> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCTTTGGGTGGAGCCTACACACCTTTTCCTCTCCTCTCCTCTCTCCTCTCCTTTTCTCTCCTCTCCTCTCCTCTCCTCCCCACTCCTCTCCCCTCCCCCTCCCCTCTCCCCTCCCCCTTCCCCTCCCCTCCTCTCCTCTCCCCCTCCCCTCCCCTCTCCTCTCCCCTCCCCTCC;SVTYPE=INV;CHR2=7;END=104613748;SVLEN=5340446 GT ./. E2570352 contig2 size178 2 cov1.70 100 0 0 0 0 32 0 0 0 0 127 0 0 0 0 32 0 0 0 0 6 0 9 0
7 100388995 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=;SVTYPE=TRA;CHR2=X;END=81316121;SVLEN=0 GT ./. E2890572 contig1 size548 15 cov4.13 145 0 0 0 0 42 0 0 0 0 83 2 0 0 0 19 1 40 1 40 3 0 4 0
7 100616823 N . <TRA> 34 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCCCCAGCCCCTGCTATGGGCCACGGTGTGAAAATGTGAGTGCTCACCATGCACTAAATCAGCCAGCACCTTGGTCTTGAACTTTGCAGCCTTCAGAGCTGTGAAAAATAAATCTCTATTTTTTTTTTTTTTAGACGGAAGTCTTGCTTTGTTGCCCAGGCTTGCCTCAAACTCCTGGGCTTAAGCTATCCTCCCACTTCAACCACCCCAAGTGCTGGGATTACAGGTATGACACACTG;SVTYPE=TRA;CHR2=12;END=49459678;SVLEN=0 GT ./. E4217255 contig1 size240 2 cov1.26 268 4 35.25 4 35.25 91 0 0 0 0 133 0 0 0 0 43 1 40 1 40 4 0 3 0
7 104485067 N . <DUP> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTAAAAACATGTTTAAAATGGTACTTCCAGACCAATGATGAGAATGTGTCCTGAAACAGGTATTATTACTGATTTAATTCTGTGCTCCTGAAGTTTATTTTAAAAATAGCATATTGTAAAGGAGATAATCCTAGATTGTGTGGGTATAGTGTGTGCATTTCTATATGTACATAGCAGTCATAAAGTAATATTCTGGGCACCACAAATCTAAAAAACGTCCAAGTCATGGAATCATAGTAGAGATGTCAAAGGGAGGGAAAGGGTGAGAAAAGGGTGAACTGAAAAAACCTGATAGTATTATTTCTTCCTGCTCAGGGTTAATAATATAGTAAAAAGAGATTTTTATTACATACAACTAGAAAGGACCAATTAGAGTGTGGAAAGTGTTCCTTTGCATAGTCAAATGATAGGCAGGGGAATATAATTTCACCAGAAATTACTATAGCGAGTTTCAATAAAGGACTGCAGAACAATAAGGCCTTGTTAATCCCATACTGGTCTGTTCAAATAGTGTGTAATTCAAAGCAATTGCTGCTCCCTAGGCAGGAATTTACAATTGCTACATGTGAAGGGAGGATAATGTGTCATTCCAAGGGTATTGCCTGAGGAAACCAAAGATAAAATAAAAACAACAATGATGTCTAACTCTTAGATAATGCTTGGTATTGACTAGGAATATTCTTTCCTTGTAGAATAATAGAGATATTCTAAGTCT;SVTYPE=DUP;CHR2=7;END=104612302;SVLEN=127235 GT ./. E258002 contig2 size717 33 cov6.95 142 53 58.8490566037736 53 58.8490566037736 40 0 0 0 0 221 47 59.1063829787234 47 59.1063829787234 34 0 0 0 0 38 0 38 0
7 105311729 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCCCGCGCCTGTAATGCCCGCTGTACAGGTGGCTGACGCACCAGGATCACTTGAACCCAGGAGCCTGAGGTAGCAGTGAGCTGAGATCGCACCACTGCACTCAAGCCTGGGTGACAGAGCGAAACCCTGTCTAAAAAAAAAAAAAAAATTTATTTAAAAAGTGATTCAGAATTATTTCCTTGAGGTATAATTCCCAAAGTGAAAGGCTGCAGCTTTATAGCTCTTGCTACACATTTCTTTCCAGGCCGTGTAACAGAAAGCCCAAACCAATCTACTGTGCTAATA;SVTYPE=TRA;CHR2=15;END=101512173;SVLEN=0 GT ./. E900092 contig2 size286 2 cov1.06 115 14 58.5714285714286 14 58.5714285714286 46 1 60 1 60 175 1 60 1 60 43 0 0 0 0 0 0 3 3
7 111239299 N . <TRA> 44 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCTACATTGTGATGTTTGGTAGGTTAGATATAATAATGCATTTTTGCCTTACAATATTTTCAACTGTTGAAGATTTATTGGGACATATCCCACATTGTATGAACATCTGTATTCCTGCATCCTCCATATATTCCTTTTTTTTTTTTTTTTTTTTGGGAAGGAGTCTCGCCCTGTTCCCCAGGCTGGGGTTCACTGGCGCACTCTCGGCCCCCTACACCCTCCGCCTCCCTCGTTCCCGCCCTTCCCCTCCCCCCCCCCCCCGCGGAGCCGGGACTCCGGGGCC;SVTYPE=TRA;CHR2=3;END=182805680;SVLEN=0 GT ./. E2461637 contig1 size284 2 cov1.06 144 14 58.5714285714286 14 58.5714285714286 39 1 60 1 60 133 1 60 1 60 28 0 0 0 0 0 0 0 0
7 112337515 N . <TRA> 2.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGATGTGGGGAGCGCCTCTGCCCTGCCGCCCCGTCTGGGAAGGAGGTGGGGGAGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGATCGCGTATGCCGTCTT;SVTYPE=TRA;CHR2=12;END=49236159;SVLEN=0 GT ./. E1595249 contig1 size208 2 cov1.45 126 0 0 0 0 34 0 0 0 0 54 4 32.75 3 42.6666666666667 21 1 0 0 0 3 0 6 0
7 112880349 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTCCCCTCCTCTCTCTCCCCCTCTCTCCCTCCCTCTCTCTCTCTCTGTGCCTGTCTCCTCTCTTACTGTCTTTCTCTTCCTGTCTGTCTGTCTGTCTCTCTCTGTCTGTCTCTCTCTCTCTCTCCCCCCTGTCGGCTGTTTCTCTGTCTCTGTCTGTGTCTCTCTCTCTCTCTGTCTCTCTCTGTCTGTCTTTCTGTCTCTGTCTCTCTGTCTCTGGCTCTCTCTCTCTCTCTCTCTCTCTTTTT;SVTYPE=TRA;CHR2=20;END=22742904;SVLEN=0 GT ./. E1351023 contig2 size246 2 cov1.23 281 2 30 1 60 80 0 0 0 0 178 0 0 0 0 65 0 0 0 0 4 0 3 0
7 112916365 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTTTCTTTCTTTCTTTTTTTTCTTTCTTTCTTTCCTTTTTTCTTTCTTTCTTGTTTTCTTCTTTCTTTTTCTTTTTCTCTCTTTCTTTCTTTCCTTTCTTCCACCCTTCCTTTCTTCTTCCCTTCTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTTGTCTTTTTTTTTTTTTTTTTTCTTTTCTTCGTTCTTTGTCCTTG;SVTYPE=TRA;CHR2=11;END=133442878;SVLEN=0 GT ./. E3068212 contig4 size286 2 cov1.06 104 11 5.45454545454545 1 60 37 2 0 0 0 146 2 0 0 0 44 0 0 0 0 6 0 5 0
7 114269923 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAACAAAACAATAACAACAACAACAAAAACAACAACAACAACGACAACCACCAGCAGCAGCAGCAACAACAACAAAAGCAACAACAGCAGCAATAGCAGCAACAACAACAAGAGGAGCAACAAAAGTAGCTGCAACAATAACAAAAGCAACAACAGCAGCAATAGCAGCAACAACAACAAGAGGAGCAACAAAAGTAGCTGCAACAATAACAAAAGCAACAGCAGCAACAACAGCAGCAGCAACAATTATAACAGCAGCAACAACAGCAACGGCAGAAAAAGCAG;SVTYPE=TRA;CHR2=10;END=99804179;SVLEN=0 GT ./. E1806984 contig4 size286 2 cov1.06 208 0 0 0 0 43 0 0 0 0 78 6 11.6666666666667 0 0 88 3 16.3333333333333 0 0 11 0 12 1
7 116070523 N . <TRA> 30.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCCCTTCCCGCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTGTTTCTCTCTCTCTCTCTCTCTTTTTGTTCCTGTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTCTGTCTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTGTTCCTGTCACACTGGCCTCCTTTCTTTTTTTAAGATAAAATTCATCTACAAATATTCTCTTACATATATAAATATATATATCTATAAAAATAAATTTAT;SVTYPE=TRA;CHR2=13;END=63900053;SVLEN=0 GT ./. E1971127 contig1 size265 2 cov1.14 412 3 0 0 0 135 1 0 0 0 115 14 55.7142857142857 13 58.8461538461538 45 0 0 0 0 3 1 0 0
7 125103018 N . <TRA> 33 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTCTTGCTTGCTTTCTTGCTTGCTTGCTTGCTTTCGTGCTTTCTTGCTTTCCTGTTTTCTTTCTTTCTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTCCTTTCTTTCTTCTTTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTGCTTTCTTTCTTTTTTTTCTTTTTTTCTTTCCTTTCTTTCTTTTTCTTTCTTTCTTTCCTTCCTTTCTTTCTTTTTCCTTTTTTTCTTTTATTTCTTCTTTTCTTCCTTTCTATTTTTT;SVTYPE=TRA;CHR2=10;END=13985656;SVLEN=0 GT ./. E4240042 contig1 size284 2 cov1.06 217 7 60 7 60 62 0 0 0 0 79 17 56.5882352941176 17 56.5882352941176 33 1 60 1 60 4 1 3 0
7 125746123 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCAAAAATTGAACATATGCTAACCACAATTCAAATATCAATAAACTTTTAAAAATTGAAATCATATCAATTATCTTCTCAGACCACAGTTAAATAAAACTGGAAATCAATACCAAGAAGAACTCTCTCACAACTGTTATATGCATATGTGTAAATTAAACAATCTGATTATGAATGCTCTTTAGATAAAAAATGAAATTAGGTAGAAATACAAAATTTTAAAAACAAATGAAAATAGAGACAAAGAATACCAAAACGTCTGAGATACAGCAAAAGCAGGACTCTATTTTATAGCATTAAATGTCTATGTCAAAAAGATGAAAAGATCTCAAATTAAGAACCAAATGTCCCACCTCAAGGGACTAGAAAAATAAAAACAAACCCAATCCAAAGCAACCAGAGAAAATAAATAACAAAGATCAGAGCAGAACTAAATGAAACTGAGACCAATAAAAAACAAAGAATCAATAGAATGAAAAGTTGCTTCTTTGAAAAGATAAATGAAATTGTCAGACTGCTAACTAGACTAATGAAGAAGAAAAGAGAAATTTTTAAATAGGTAGTAGCAGAAATTATAAATGCATATCATTTAAATTAAGAGCATAAATGAGGCCACATAAATGCTTTCTTTTCCAGTTTTTTTAAAATTTACTTCCCCCTTCCAGAGCAGATTGCAACAGTCTGGTATAATTGATCTTGTCCACAAAAAATCGACCGTAATACATTAAATAGTTCTGTAATGTGGCACCGTTAAAAAGGATCTGCTTCAAATGACTGTGAACTGACAAGGAAAGAAAATGTTATATAGTTGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCTGGGCATAGTGGTGCACATCTGTAATCCTAGCTACTTGAGAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAGGCAGATGTTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTTCATCTCAAAAAGAAAAGAAAAGAAAAGAAAATGGTATATGCTTCTCTTTAGGTGTTCCAAAGGCCAGAGACTATGTCTGTAACTATTATACTAAGTTATACCAATCTCCTCCAGCCTGGACATATGGAGTCTTTTCTACCCATGATTAAAAGCTTGAGAAAAATGAGCCTGAATTTTTGACTGGCCTGAAATTTCATCCTAAGAAAGAGGATAGTAATGCAGCTAATATATTTTAACATAGGTGAAAAAACCAAAAGGGTAATACACAAATCCATGAGAAAAATGGACAAAAATATGTAGATACAGACAACAGGAATCCTCCTATGTCCAGTAGAAGAAAGAAGTAGAAATAAACATGAAAATACCTTTGACCAGCAAATATCTCCACCCTCCAGGGAGAGGTAGTAGCTTCTAGGGAAACCATCTTGGAGAGGGTCCTGTCTTCCCCTGAGGTGGGCTCTGAATCCAGCACTCTTCCCCTTTCAGAATAAAGATTAGAGAATAATTCTAATACACGATCTACAGTGGTGGTTTGTGTCTTAGGAG;SVTYPE=DEL;CHR2=7;END=126166901;SVLEN=-420778 GT ./. E3555082 contig2 size1631 192 cov17.78 155 66 58.5 65 59.0615384615385 22 0 0 0 0 177 63 59.015873015873 63 59.015873015873 38 0 0 0 0 34 0 41 0
7 126098488 N . <INV> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATTTTCAGCTGTACCTTGTCTCCTGACATTTCTCCATTTCCTTAAAGGAGGGCAGTAAAAATGATTATCAGTATCCACATTGTATGTTTGTAATCGTTAATCACTGCATATAACTATCTTAGGCTACCTGTTGGTAAACTATATGCAAAGAATATATATACACACATACAATTAATCCATTATCACAATGTATGTAAGCAACGCATTATAGAAATGCAAGGATAGACAAATCCATAACCATCATGAGAGATTTTAATTCATCTTTTCAAAGATAGAAATTTGATTATACAATATATAATTAAGAATAGTTTGAATAAGTCAGTAATAAAATTATCATTTTCACTGCATTATTTTAAAACATAAATGAGCTTCACAGAGATCAATTATGAATTAGGTTATCCAGCAACAAAAATAAAATTTTCATAACAGGAAACATGAGACTATATCCTTTCACCTAAAAAGGTAATCAAATTAAAATTATAATTTATAAATAAATATGAGTTTTTATTTGGAAACCAAATATCATCCCTGTAAGTAACTCCTATAAAAAGGAAAGTACAAACTATTTAGAAATTGAATAATCATGAAAACAGTATGTATGAAAACTTGTGGATACAACCTAAGTGGTGCTTGAAGGAAAATTTAAAGTCCAAAATGGCAATCTTAGGATGCAGGAAATCTCAAAAATTAATCATGGAACTAGGTAAACTTTAATA;SVTYPE=INV;CHR2=7;END=126167441;SVLEN=68954 GT ./. E649711 contig2 size718 72 cov15.14 77 56 56.875 55 57.4181818181818 47 0 0 0 0 218 61 59.7049180327869 61 59.7049180327869 36 0 0 0 0 129 0 129 0
7 126167431 N . <INV> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACAATACAAAATTAGCTGGGCATAGTGGTGCACATCTGTAATACTAGCTACTTGAGAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAGGCAGATGTTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTTCATCTCAAAAAGAAAAGAAAAGAAAATGGTATATGCTTCTCTTTAGGTGTTCCAAAGGCCAGAGACTATGTCTGTAACTATTATACTAAGTTATACCAATCTCCTCCAGCCTGGACATATGGAGCCTTTTCTACCCATGATTAAAAGCTTGAGAAAAATGAGACT;SVTYPE=INV;CHR2=7;END=143939814;SVLEN=17772384 GT ./. E3555082 contig3 size320 3 cov1.42 225 1 2 0 0 36 0 0 0 0 237 28 0 0 0 53 0 0 0 0 69 0 84 0
7 131272555 N . <TRA> 24 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCGCCCCCGCCCCCCACCCCCCCCCCCGCCCCCCCCCCCCCCCCTCCACCCGCTCCGCCCACCCCGCCCACCCCCCACACCCCACACGCCCCACACCCGCCCCACACTCCACACACTCCACACACTCCACACACACCACACACTCCACACACACCACACACTCCACGCTCCGCACACCCCACACCCACCCCACACTCCCCACACTCCCCACACCCCCCCCACCCCCCACACCCCACACACCCCCCACACCCCACCCACCCCACACCCCCCAC;SVTYPE=TRA;CHR2=4;END=151172070;SVLEN=0 GT ./. E4010007 contig1 size276 2 cov1.09 449 5 25.6 2 60 133 2 46 2 46 72 0 0 0 0 31 0 0 0 0 3 0 11 1
7 131272597 N . <TRA> 24 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCGCCCCCGCCCCCCACCCCCCCCCCCGCCCCCCCCCCCCCCCCTCCACCCGCTCCGCCCACCCCGCCCACCCCCCACACCCCACACGCCCCACACCCGCCCCACACTCCACACACTCCACACACTCCACACACACCACACACTCCACACACACCACACACTCCACGCTCCGCACACCCCACACCCACCCCACACTCCCCACACTCCCCACACCCCCCCCACCCCCCACACCCCACACACCCCCCACACCCCACCCACCCCACACCCCCCAC;SVTYPE=TRA;CHR2=4;END=151172070;SVLEN=0 GT ./. E4010007 contig1 size276 2 cov1.09 451 2 60 2 60 130 3 14.3333333333333 1 43 72 0 0 0 0 31 0 0 0 0 3 0 11 1
7 134897470 N . <TRA> 35 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAGGAACAAGGGAGAAACTCTGTCGAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTGGTGGTGCTGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTGGAGCCCAGGAGGTCGAGGCTGCAGTGAGCTGTGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCAGGACACCGTCTCAGTTTAAAA;SVTYPE=TRA;CHR2=12;END=25141069;SVLEN=0 GT ./. E2870970 contig1 size202 2 cov1.50 171 12 55.5833333333333 11 58.0909090909091 20 1 60 1 60 120 1 4 0 0 44 0 0 0 0 0 0 1 1
7 142028760 N . <INV> 22 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCATAGCCTTGGCCTTCATGGGGTTTAAAGTACTTGGAAGATTCCAACTGTGCTAAATTCTACTGATTAACAGACACATGATACCATGAGAGATTATGAGAGGGAAACTGACCTCAGCTGGGAGCCAAGGGAAGCATAATGGTGATTATCACTAGGGCTGATGATGCTGAGATCTGAAGCACAGGTAGGTGTTGACCACTACAGAAAGGAAGGCTCCAGCCCAGGGCACAGGAAATGGACTTTGGAGTCTCTCAACATGGCTGGAGTAGAGAAGGGCAGGGAGGTCGGGGAGGAGAAACCCAGCAAGGCCTTGGAGGGCGACTGTGAATATAGGAAATGCAGGCTGCAGCTGAGACCACCGTAGGGTTCAACATGAGGAAAAATCATAGAGAGAGGAAAGCACGTGGTACCCAGGTAGAGACGGGAGTCTAGATGGATCTGAAATACAAATCCTATTTCACCTAGGAGGCCTCAGACTCAGGTGAATGACTAGGAAAGTCAGAGCTGGGAAACCCCTGGCACTAGCCCAAAAGGACACCTCAGAGGAAAGCCCGGAGGGCAACA;SVTYPE=INV;CHR2=7;END=142103453;SVLEN=74692 GT ./. E1088079 contig1 size564 5 cov1.34 229 41 22.5365853658537 20 40 40 7 20.4285714285714 4 35.5 236 71 41.9859154929577 58 46.7241379310345 47 11 38.8181818181818 9 44.1111111111111 3 0 3 0
7 142588297 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACACACACACCTGCAGACACACACACACCTGCACACACACACCTGCAGACACACACACACCTACAGACACACACACACCTGCAGACACACACATGCACACACACACCTGCAGACACACACACCTACAGACACACACACCTACACACACACCTGCAGACACACACACACCTGCACACACACACACCCACACACACACCCGAAGACACACACACACACACACCCGCCGACACACACGCCCACACACACCCCCCCACACGCACACCCCCCCGCACCCAC;SVTYPE=TRA;CHR2=2;END=195104298;SVLEN=0 GT ./. E3924131 contig1 size278 2 cov1.09 593 2 60 2 60 106 1 22 0 0 117 1 0 0 0 41 0 0 0 0 23 2 12 0
7 143936532 N . <INV> 1.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTCTATTTCTGTTCTTAACCCCAGCAGGATGCACAATTAACAAACACCGACAGCCACAGAGCACACCTCTGAGACAACATCTTTCATTATAGTCCCGGAATGCTTGGATTTCATGAATCCCAGCACTGCCCTTGTTCCCCAAGCTTCAGATGGTTCAAGTGAACCTGTCAGGAAGCAGAACCAGTGTGACAATGAATAAGCTCCTGGCAGGAACCTCTGTAGCTCAGCCTCTCCCTGATGTAATCTGGGTTACTTGTGTTGCAGCAGAACTGGGAAGAAAGGACCCTGAAAAGTTAGCTGGTTCCAAGTGACCCTCCAAGGTATGGAGATGCTTTGGGGAGCTGGTGAGGGAGGCACAGAGCAGACTGGGGAGTCAACGGAGGGGCCAAGGTGTCCCGGTGGGGCTTATTAGAACCTGCCTGAAGGGAGGGTCTCCTAAGACACAAACCACCACTGTAGATCGTGTATTAGAATTATTCTCTAATCTTTATTCTGAAAGGGGAAGAGTGCTGGATTCAGAGCCCACCTCAGGGGAAGACAGGACCCTCTCCAAGATGGTTTCCCTAGAAGCTACTACCTCTCCCTGGAGGGTGGAGATATTTGCTGGTCAAAGGTATTTTCATGTTTATTTCTACTTCTTTCTTCTACTGGACATAGGAGGATTCCTGTTGTCTGTATCTACATATTTTTGTCCCTTTTTCTCATGGATTTGTGGATTACACTTTTGGTTTTGTCACCTATGTTAAAAGATTTTCGCTGCATTCCTATACTGTTTCTT;SVTYPE=INV;CHR2=7;END=144005619;SVLEN=69088 GT ./. E3555082 contig1 size779 36 cov6.98 190 36 3 0 0 41 0 0 0 0 253 32 0 0 0 33 0 0 0 0 66 0 78 0
7 143936535 N . <DUP> 1.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCCCAAATGTTATACTTACTTACTAATTATTTTCTATCTTTTTAATTTTTATACCCTCAAATGTGTGTTTATAACCAATGTTCCTAAGGTGTTGGTTATATAGAAATGAATTCTCTAAAGCCATTATTCACAGAACTTTCAGCTGAGGAATTTTATATTAAGCAATTATGCAATTTACAAACTAATGAGTTTATTACAATGTGGTCTTTGACCTGCTGGGGTTATGGTATAAACCCAAGGAAAATCTTGCCCAGGTAATCAGGGTGTGAGAACACGCTCACCTGTGTTCCAGCTGTATATGTCCACAGTGAATTGCTTTGGGGACACACAAAAATGCTCCTGATCATATGAAAAGTCTAGTGCCTAGTAGGCCATCCATAAACATTAGAATCTTTTCTTTATTTTTCTTTCCACACCCCGGTGAAGTGCAACAGATATAAATGACAAGCCTGTGAAAACAACAATTTTAGAACTTTTTTCCATATTCCTCATCATATGAACATCAGTTAGAAAAAGTCATTTTAAGGTAGAAAACAGAAAATGTGAGCTAAAACAAGTTAAATATAAGGTTTTTATGATGCCAAACAAACTAATTTAGGAAATGCATCGCCTCAAATTACATGATTTATCACATATCAAGTTGAAGAAGCTTAAGCTTCTAAAAATGGTCAGAGTAAACACATACAAAACGTAAAAGTATACGAAGGAAAATAACACAGACAGAACAGTCCGATCTTAGTAGAAATGGATATGCTTACAGATGTTTGCATGATACGCCAGTATGCAGAAATCAGGAAACTGCCTTTTGGGAGCAAGTAGTCAGCTG;SVTYPE=DUP;CHR2=7;END=144007958;SVLEN=71423 GT ./. E1606361 contig1 size829 63 cov11.48 176 26 5.19230769230769 0 0 37 0 0 0 0 240 38 0 0 0 30 0 0 0 0 14 0 10 0
7 143938341 N . <INV> 3 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTACATGATCTTCCAGCATTGGGCATTTGATTTCATTGAACATTTATAACTTCTATGCTTAAAGTACTTTTAGAATTTGACCACAGAGTTCATTTGAGAGTAATACAGACAAAAGCTAACATAAGATGGGTGGGTTTAGCCACCTTACAGAGTAAATTATCCTAAGAGATGTTTTATAAAAGAGCAGCTAATAATGTTCGGAGAAACAGCCAAGACATAGGTAAATATATCTTCAGGATGGCATGACAGAAGTGGAATGAGAAGAGAGTGAAAATGCTAATGTTCTCAATTATATTTCATGAATAATTATGAGTTAAAAGGGCAGAAGTTCATCTGAAATCCTTTGAAACAGAGAACAAAAGAGAAATAATTGTAAGGACTTACTTTTAGGGTTTGTTTCAGCTGCTAGTGTTACCTTAACTAAGACAAATTCCTTAAAAGATGTGGGGTCTTCTTCCCTTGCACAATTGTCTCTGGACTTAACTGCCAGTGTGGGATTGCATTTCCCAGCCCTCTTATATTTAGGTGGGGTCATGTTCTTACAAAAGGTATACAAGCAGAAGAGATTTGTGCAGCTTCCAGGGCTGCAGTGGAAGGAGGGCATGCATGGAGGAGGAGGGCATGCCTCCTCCATGTTTGGCCTTCCCATCACTGGCTGGAAGTGAAGGCCTACAGGGCTCTAGGATGGCGGGACCATGCGATGGAAGGTGCCTGGGTCCCTGCATCACCAGTGGAAGGCTGTCTGTCATCCCTGCCTAGGACTTTACATGAGCAAGATGTAAAGTTTTATTTTGTAAAATATATTTGTAAACCTAAATATATAACAAATGAGACAGATTAGCTTAGAACACCTGTTGTCTTTTCTGGCTAATTTTTACCTAAGTGTTCATAAGCCATTTTTCAAGAATCTCATAGAATTCCATAAGATTTTACATTAAATTTATTGTCCTTTAGTTTCAACAAATCATGTCATTGGAAATTAGGATATTTGCCTCTAGTAAGTCTTAGAAACCCTCTCTTGTCCTGTACTAGAAAACATATAGGATGATTTAAAAGTTATAA;SVTYPE=INV;CHR2=7;END=144090465;SVLEN=152125 GT ./. E1911773 contig1 size1062 63 cov8.96 231 30 0 0 0 36 0 0 0 0 240 60 42 42 60 39 0 0 0 0 93 0 97 0
7 143959226 N . <DEL> 7 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTGGCTGAGTTTACTGATGGTGCTGGGAACTCTGCTGCCCATCTGAGAAATGCCAAGGAAGGATCTTGCTTCTTCAAGTGCTTTTGAGAAGGGAAGGTGTTATTAAGTCATCACCTCCACAGAGTACCTTCCAATTATCATGAGAGCTTTGTGTGACGCATGAGAAAATAGGCTTCACTTGCACCAGCATGATTTCCATAGAGGCAAGATATCCAAATAGTGCAGGGAACAGGCTTATGCTACAAAATTATTTGTTGTTTTTCTGAAATTCGAAGTTAACTGCACATCCTTTTTTATCTGGAAAACCAAGCTATAACCCAAATGACTTCAACAACTTTGAGCCCGATATTATTGACAGGATGGGGCTCTGGGGCATTTTGGGGAAAGAATTGA;SVTYPE=DEL;CHR2=7;END=144088794;SVLEN=-129568 GT ./. E568772 contig2 size394 42 cov16.10 223 43 5.02325581395349 0 0 51 0 0 0 0 154 34 14.1176470588235 8 60 59 0 0 0 0 14 0 21 0
7 146035843 N . <TRA> 30 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAAAGTATAAAACTCATTGGTAAGAGTAAGTACATAGCCAAATTCAAAATATTCTAATACTGAAATGGTGGTATGCAAATCACATATACTTAGCATGAAGGCTAAAAAATAAAACTATTAAAAATAATTATAGTTACAATAATTTGTTAAGGAATACACAATATAAACAGATGCAAATTGTGACATCAGAAACATAAAAAATGGGGGTGGAATAAGAGTATAGAGTCTTTAATGTGGTCAGAATTAAGTTGCTATCAGTTTAAAATAGCCTGTTATAAGTGTATTTTATATAAGCCTCATAGTAACCACAAGCAAAATCTATATCAAATACAGAAAAGATCTTTTTAAAAAAGGTTTTAG;SVTYPE=TRA;CHR2=17;END=38916114;SVLEN=0 GT ./. E1649543 contig3 size361 6 cov2.51 182 152 51.7302631578947 133 58.9473684210526 56 28 50.7857142857143 24 59.25 123 42 1.5952380952381 0 0 47 4 2.5 0 0 6 0 11 0
7 150203478 N . <TRA> 0.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACGGCAGCCTCCGCCCGGCCGCCGCCCCGTCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGCCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCACAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGTGGTGGGGGCGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCGCGGCCGGATGGGTGGGCGCCAGCCCCCCGCCCGGCCCGCCGCCCCGTCCC;SVTYPE=TRA;CHR2=10;END=104889669;SVLEN=0 GT ./. E1916178 contig1 size275 2 cov1.10 296 4 0 0 0 89 0 0 0 0 96 1 0 0 0 30 0 0 0 0 3 0 5 0
7 150746657 N . <TRA> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCCCCCAAAGCCAGGGGACCTCTTCCTTCCTACCAGCCATGGACTCCCCACCCCCCAGTGCCGATAAGACCTTTTCCTGCATTGACATAGCCTCTCCCTAATTGTACCTGTTTTTGGAGTTGGGATTTGGAGGTGGAGGGATGTGAGAGGGGGAGG;SVTYPE=TRA;CHR2=15;END=84810725;SVLEN=0 GT ./. E1736138 contig2 size157 2 cov1.92 122 59 54.8474576271186 57 55.9122807017544 39 0 0 0 0 72 61 42.1639344262295 46 51.1739130434783 38 0 0 0 0 116 0 108 0
7 155050748 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCTCCCCCCCCGCCCCCCTCCCCCCCCCCCCTCCTCCTCCCCCCCTCCTCCCCCTCCGCCTCCCCTCCTCCTCCCTCCTCCTCCTCCCTCCTCCTCCTCCCCCCTCCTCCTCCTCTTCCCCTCCTCCTCCTCCTCCCCTCCTCCTCCTCCTCTCCCCTTCTTCCTCCTCCTCCTCCTTTGAAACACAGCCTTAGCTAGTCTTTCCGAAGCATCCAATTTAGCTTTCACAGAAACATGAAGTCTTTCTTTTTGTACTTACAGTTAAT;SVTYPE=TRA;CHR2=8;END=124682433;SVLEN=0 GT ./. E2300564 contig1 size269 2 cov1.12 97 8 40.75 5 60 37 3 60 3 60 144 0 0 0 0 31 0 0 0 0 14 0 16 0
7 158510035 N . <TRA> 30 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAGGAAGAAGAGGAAGGAGGAGAAGGAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAAGAAGAAGAAAAGAAGAAGAAAAGAGAAGAAGAAGGAAGAAGAAGGAGGAAGGAGGAAGGAGGAGGAGGAGGAGAAGGAGG;SVTYPE=TRA;CHR2=1;END=197514068;SVLEN=0 GT ./. E1898078 contig1 size171 2 cov1.77 86 1 52 1 52 43 0 0 0 0 137 70 36.7285714285714 41 56.0975609756098 38 22 42.6363636363636 16 54.9375 15 1 4 0
8 14088735 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACAAAGAGAGAGAAAGAAAGAGAGAAAAAAAGAGGAACGGAGGGAAAGAGAGAAAGAAAGAGAGAGAGAGACAGACACACAGACAGGCAGGCAGGCAAGGAAACAGAGTAAGACAGAAGATAGGAACAGAGAGAGAGAGAGAGAGACAGAGAGACGCAGAAAAAGAAAGAGAGAGGCAGACAGACAGAGAAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGAGAGAGAGAGAGAGAGACATGGAGGGAGAGAGACAGACAGACAGACAGAGAGGCAGGCAGAGAAAGAGAGTAAGACAGAAGACCGACACAGTGAGAGAGAAAGGCAGAGAGAGAGAGAGAGAGAGAGAGACACAGAGAGAGAGAGAGACAGATAGAAACAAACAGAAAGAGAGAGAGAGACAGAGAAAGAGAGAGAAACAGAGAGACACAGAGAGAGAGAGAGAGAGAGACGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGGGG;SVTYPE=TRA;CHR2=15;END=36813690;SVLEN=0 GT ./. E3124325 contig1 size509 4 cov1.19 365 1 0 0 0 136 1 0 0 0 80 0 0 0 0 48 1 0 0 0 9 0 3 0
8 18401664 N . <TRA> 42.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGGAGGCCAAGATCGTACAACTGCATTCTAGCCAGGACGACAGAGTAAGACTATGTCTTAAAAAAAAAAAACAAAAAAAAACGGCTCAGATTGTCCCCTCCTAAGTCATTGCCCTCACCACAGGCATTTCCTAATTTTATTTGATTTTTTTTTTTTTTTTGGTTTGTTTCTTTGTTTTTTCTTTTAATAAAGGTATTAGTTTCGTG;SVTYPE=TRA;CHR2=7;END=133731320;SVLEN=0 GT ./. E380754 contig2 size207 2 cov1.46 121 1 60 1 60 27 0 0 0 0 271 10 58.1 10 58.1 48 1 60 1 60 1 1 0 0
8 18768173 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAATGTAAATCTGGACAAAAGCAGGAAGAAGA;SVTYPE=TRA;CHR2=21;END=29069171;SVLEN=0 GT ./. E4319795 contig2 size159 2 cov1.90 158 16 0 0 0 47 0 0 0 0 150 52 45.4807692307692 40 59.125 45 13 32.3076923076923 7 60 5 0 4 0
8 26167656 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGATATCTAGACCATCTTGGCCAACATGATGAAATCCCGCCTCTACTAAAAATACAAAAATTAGCTGGGATTACAGGTGCTGACCACCACACCTGGCTAATTTTTTTGTATGTTTAGTAGAGACGGGGCTTCATCGTGTTGGCCAGGTTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCCCTGCACCTGACGACAAACTTTCAATT;SVTYPE=TRA;CHR2=X;END=53762398;SVLEN=0 GT ./. E668396 contig2 size250 2 cov1.21 63 2 47.5 2 47.5 25 0 0 0 0 65 16 3.9375 0 0 17 0 0 0 0 13 1 16 1
8 43604917 N . <TRA> 12 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCAGCAGGCTGGAAACACGCTTTTTGGAGAATATGCAATGGAACATTTTGGAAAGCATTGAGGCCTATGGGGAAAAATGAAATACCCCAAGATAAAAACTAGAAAGAATCTATCCATAAAATGCTTTGTGATGTGTGGATTCATCTCACAGAGTAAAACCTTTCTTTTAGATCGGAAGGGCGGCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGGATCATTAAAAAGCCTCTGGAAAAAAACTGAATATCCCCAAATAAAAACTTGAACAACC;SVTYPE=TRA;CHR2=11;END=51207934;SVLEN=0 GT ./. E3077059 contig2 size281 2 cov1.07 172 12 5.25 0 0 55 3 6.33333333333333 0 0 163 2 60 2 60 51 2 44.5 2 44.5 9 0 3 0
8 69488212 N . <TRA> 33.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTAGTGACAAAGTAAATTATTTACCTGTTTAAACTTTGATTGATTTCCTAATTTGGACAAGTTGAATCATAATATATGCTTACTTTTTGGTATGATGAGCTGACATAATGCTAGTAGATGGTTGTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTTTTTTTTTATATTTTTTTTTT;SVTYPE=TRA;CHR2=3;END=33154671;SVLEN=0 GT ./. E4130839 contig2 size185 2 cov1.63 128 15 59.4 15 59.4 39 0 0 0 0 176 7 9.85714285714286 1 60 66 1 2 0 0 1 0 1 1
8 70915408 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGGTGCCTGTAGTCCCAGCTACTCGGGAGGTTGAGGCAGAAGAATGGCGTGAACCTGGGAGGCGGAACTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGGCTGGGTGACAGGAGCGGACCCCCTCCCCAAAAAAAAAAAAAAAAAAATTAGCTTGACGCAGTGGTGTACGCCTACAGTCTCAGCTACTCTGGAGACTGAGGTGGGCACATTGCTTGAGGCTAGGAGTTCAAGGCTGCAGTGAGCTATGACTGAGCCACTGTGCTCCAGCCTAGGTA;SVTYPE=TRA;CHR2=7;END=140117036;SVLEN=0 GT ./. E3981954 contig2 size281 2 cov1.07 108 1 60 1 60 35 0 0 0 0 171 16 55.6875 16 55.6875 30 1 60 1 60 1 0 0 0
8 78518240 N . <DEL> 54 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAAAGGTATCAAAACCAAAGAACCCATACAGAGAGTTGGTCCCTTGAAAGTACCCAGAAACAAAACTAAATGATGATACATAACATACATCACAGTCATATCCTTAAGGAAAAAACAATAAAACCTGTTTTATCAGAGACTAGGATGGCAACCCCTGCCTTTTTTTGTTTTCCATTTGCTTGGTAGAATCAAAAATTCTAGGAGGATTTATTGCTGAAGTATACCAAACATTTAAGGGATAAATTATACCTATTTTTTTTTACAATCTCTTCTAGAAAACGGAAGCAGAGGGAACATTTTCTAATTCACAATATTGATTCTTCCTATCCATGAGCATGGAATGTTCTTACATCTGCTGAGGAGTGCTTTATCTCTACATCTGATTGGTATACCTGAAAGTGACAGGAAAAATGGAACCAAGGTGGAAAACACTCTGCAGGATATTATACAGGAGAACTTCCCCAACCTAGCAAGGAAGGCCAACATTCAAATTCAGGAAATATTGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATT;SVTYPE=DEL;CHR2=8;END=112063330;SVLEN=-33545090 GT ./. E3936399 contig4 size565 11 cov2.94 141 3 51 3 51 38 0 0 0 0 166 4 49.75 4 49.75 52 0 0 0 0 5 0 5 0
8 98114145 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTTTCTCTCCCCCTTGCTCTCTCTCTCTCTTCCTGTTCCTCTCTTCCTCCCTCTGTCTTTCTCTGTCTCTCTCTCTCTCTCCCTGTCTGTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTTTCTCTTTCTCTGTCTCTCTCTCTCTTTCTGGGTGTTTCTCTCTCTCTCTCTTTCCATCTCTGTCTTTCTATGTCTTTCTCTCTCGTTCTGTCTTTCTCTCGGTTTTCCTCGCTCTGCCTTTTTGTCTCTTCCTCTTT;SVTYPE=TRA;CHR2=10;END=95591004;SVLEN=0 GT ./. E984011 contig3 size281 2 cov1.07 122 7 39 5 49.2 35 2 20 1 40 532 2 0 0 0 198 0 0 0 0 5 0 8 0
8 108635388 N . <TRA> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTTCAGTGAGGCAATGGGAACATGCACGAACTGTCCAGATCCTGTGAAACTATGATAGAATTAAATCTTGTCTGCAGTCATCTATTCCAGGCTAAAATCTCATCAGGAAAAGGCATCAATTCAGTGTAGATCTCGGGGGGCGCCGTATCATTAAAACATTCTGGACTGAGTCCACAAGAATAACTTTTTGAGGTGGGGAAGAAAATGTGTTTAGGAATTCAACAAGTACTGAACAGATTAATGAACTGATAAAGGGAGAATGCTCTGAAT;SVTYPE=TRA;CHR2=1;END=112985160;SVLEN=0 GT ./. E3064265 contig1 size271 2 cov1.11 146 19 56.2105263157895 19 56.2105263157895 40 0 0 0 0 103 1 60 1 60 43 0 0 0 0 1 0 0 0
8 112168293 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTTTTTTTTTTTTTTTTTTTTGCGGTTTTAACTAAATCCTAAATTTTTTTTGGGTTACAAGTCCCCAAACTAATGCTTTCAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTAATTTTTTTTTTTTTTAATAGTTTTGGTAAGATATAAATATTTAAAAAGAGGGTATTAATATTTAAATAGTATAGAAAAAAAATATAGCAGTATTT;SVTYPE=TRA;CHR2=X;END=79792424;SVLEN=0 GT ./. E3371248 contig1 size286 2 cov1.06 170 0 0 0 0 62 0 0 0 0 111 1 0 0 0 43 0 0 0 0 11 1 6 0
8 124682433 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCTCCCCCCCCGCCCCCCTCCCCCCCCCCCCTCCTCCTCCCCCCCTCCTCCCCCTCCGCCTCCCCTCCTCCTCCCTCCTCCTCCTCCCTCCTCCTCCTCCCCCCTCCTCCTCCTCTTCCCCTCCTCCTCCTCCTCCCCTCCTCCTCCTCCTCTCCCCTTCTTCCTCCTCCTCCTCCTTTGAAACACAGCCTTAGCTAGTCTTTCCGAAGCATCCAATTTAGCTTTCACAGAAACATGAAGTCTTTCTTTTTGTACTTACAGTTAAT;SVTYPE=TRA;CHR2=7;END=155050748;SVLEN=0 GT ./. E2300564 contig1 size269 2 cov1.12 144 0 0 0 0 31 0 0 0 0 97 8 40.75 5 60 37 3 60 3 60 16 0 14 0
8 131248115 N . <DUP> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGACAATAGCTTGAACTCGGGGGATGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGTGAGACTCCATCTCAAAAAAAAATAATTTCATGATGATAAAATTAAGAGGAACATGCATTTACTGAACTCCCATAACCTGGCAGACCCTTTACAGATATGAGATCATTAAATCCCTTCAACA;SVTYPE=DUP;CHR2=8;END=131274647;SVLEN=26532 GT ./. E2726305 contig6 size236 8 cov5.12 142 15 44.2 11 54.0909090909091 54 0 0 0 0 207 12 30.1666666666667 6 49 49 0 0 0 0 7 0 8 0
8 134206863 N . <TRA> 7 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCAGACCCACCCCCCCCCCCTCCACCACGCGCTCCCCAGCTATACACACCCCCCACACCCACACCCCCCACACACCACATAACCCTCTGCACACGCACACACCCCACACACCCCACACACAGCACACACCACACCATGTGCACACACACCCCACACACAGACACCACACACTGCACACACACCCCACCCCCCCGCACACGCCACACCGAGCACATGCACACACCACACACACCGTCTACACAAGCACACAAGCCCCACACATACACCACAGACACCCCACACA;SVTYPE=TRA;CHR2=22;END=40099594;SVLEN=0 GT ./. E3036402 contig2 size286 2 cov1.06 185 6 52.1666666666667 5 60 55 4 13.75 1 41 134 0 0 0 0 47 0 0 0 0 10 0 5 0
8 144018247 N . <TRA> 5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGTGATTGTGAGTGTGCGCGTGTGTGCTCGAGTCTCGGTCAGTGCGCGTGTGTGTGCTTCTGCGTGTATACGTGTGTGTGTGTGTGTGTGTGTGT;SVTYPE=TRA;CHR2=18;END=34473463;SVLEN=0 GT ./. E478655 contig1 size284 2 cov1.06 146 1 12 0 0 45 0 0 0 0 106 5 38.4 3 60 45 3 33.3333333333333 2 50 5 0 4 0
9 12354700 N . <TRA> 10.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGACAGAGATAAAAAGAGAGAGAGAGAGAGAGAGAGAGAATTCACCTTTCCTCTGACTTTTTGTTCTATTTGGGCCCTCAGTTGATTGATTGAGAGAGGGTGGGTCTTTCTCACGCACCCCACTGAGATAAAAAGAGAGAGAGAGAGAGAGAGGCAGAGACAGAGACAGAGAGAAAGAGAGAGACAGACAGAGAAAGAGAGAGAGAGACAGAGAGACAGAGAGAAACACCCAGAGCGCGCGAGAGAGACAGAGAAAGAGAAAGGGAGGGCGCGACAGAGAGAGAG;SVTYPE=TRA;CHR2=7;END=4443028;SVLEN=0 GT ./. E1017420 contig1 size286 2 cov1.06 98 0 0 0 0 66 0 0 0 0 440 80 1.85 0 0 124 22 1.77272727272727 0 0 3 0 11 1
9 28031835 N . <INV> 60 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACATAAGATACCCAAAGTAGTTTTACACAAGAGAGTGAGTGCTACAATACATGGGTATAAAAATGACATAACTCATTCTTTCTTTTTCCGCAGCACATGCTTAAATAAACTTATAGTTTCTCTTACTGGACTTACACTAAATAAATGTTATGAAGTAGATAAATGACTTTAATAAATTCCTTCCAAGCACACCAGTTTGAAGATAAAGCAAAATGTAAGTTATACAAACACCAATGAACAAGAAAATTAAAGAAGTAATTTTCTCTAATTTCTATTATAAACATTCAGCCAATTTATAAGGTAAATATAGTAACAGTCTAATCAGAAAATAAAACCATAAAATTCCAAACTTATCAAAAAATATTGCACTATGGACTTAAGTCCACTCATAATAAGTTAGCTGGGATTAATGATAGTATAAAGACATTGCAATTTCTAAGATATTAAAAATATAGCTAATTCCAACTTAATCTAAACTACTGTTAAAACTTTGCATTTTTCTTAGGTATGAACACTTGTACATGCATGCAATTTATAAGTAAACAATTATATATAAATTGGTGTGCATGCTCACATTTTATTTCCTGTTATGATGGTGTATATCAAAAAAGATTCAGAGCTCACAACTTCAATTATACCAAGTATTTTATAATAGAAGTGTTTCCTAGTAGTTAGGCTGTTGGGAAAAAGCTGAGTGTTGGGAGGGAAACTGAGGCAGGGCTTGCATAATGTCCTCTGGAATGTGTCTAGACTTTCTGACTATTTCACTAATATCTCTCTGTAATGATCTGTTTTCCTTTGATAGACAAGTGTGTGTTCTGGACAGCTTGCTGCCATACAGCACTGAAAGGGAGCTGGTAGAGGTCTCCCAGGTATTCCCAATCAGCCCTGGACAAACAATAATCGGCTTAG;SVTYPE=INV;CHR2=9;END=28059140;SVLEN=27304 GT ./. E1277970 contig1 size913 40 cov6.62 87 35 42.5428571428571 23 55.6086956521739 43 0 0 0 0 107 39 27.9230769230769 16 53.9375 50 0 0 0 0 62 0 63 0
9 28031863 N . <INV> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATTATCCTCGTTTTCTAGGCTGACTTGCAAAGCCCTATCCTTCAAATATCACACATAAGGATATTTGAGTTCTTTGTGAGTTGCTGAAATTCTGGGCTTCTGGGCCACAAAAGCCAGGCTGAGCTTTCTTTTCGGAATTCACGCTTCACCATGATGCTCCAAATCCTCCTTAAAATACCTTCAATCTGGTGTATTATTGTGACAGCCAACTGTGTGCCAGGCAGGCAGTACCTATTAAAAGTTGTTTGGAGATTAGGGCTCAGAGAACAGCTGGGTACCTTTGTTA;SVTYPE=INV;CHR2=9;END=28034467;SVLEN=2605 GT ./. E1238205 contig1 size288 25 cov13.11 51 33 58.8484848484849 33 58.8484848484849 47 1 60 1 60 41 33 59.5757575757576 33 59.5757575757576 31 0 0 0 0 60 0 57 0
9 28034299 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGTGTTTCTATTCTGCCCCAATTTAATACCATCCTTACAAAGCTCACATCATGTGTGAAACTTATTGAAAAGTATAACCAGGATAATCTGCTAAATTCGTTAGGAAGACAGAAGATGTAGCTGACTTCAGTGAGAGTTTGAAGTGAATGCAACCCAAGTCATGTATAGTTCACTTGAAGGACATTTGTTCAGTCAACAAGGATTTCCCATCCCCCACACCCAAGTCCAGCCCTTTCCAGTGGGCCCTTGTGCGTTTTATTCTTGTAAACACACTTCAATATCACCTTCTCTAAGAAGGGGCTGTTCATTTGTATGAGCTTCTGTAGGTCTCCCTTCTAAGAGATGCCTTAGCAAAGCTTCATGTGCTCTGGAGGTCTCGGGCCCTCCTCCCTGTCTAGGAGGCTCCTCCAAAGTGAATTAGCTTCATTTCCCATTTTCATTCTACCTTAAACCTGTGAGGTGTTTGTTTCCTGGGGCCAGGGCTTGCTGGGGCGTTCAGCAGCCTGCACACCAGCTGCTGCTCTGCTCCCCAGTGTGCATCTTGTAACAACGCAGCTCCTTTGCTGGTTGTTGAATAGGTAGAGGGGCAGCTGTGAAGGGCAGAAGAAAGCTGACTATTTCACTCACCTCTTGAATGCTTTGCTGCTTAGAAATTTCTTCCAAGAGATACCCTAAATCATCTCTCTCAAGTTCAAGTTCCACAACTCTCCAGGGCAGGGGCAAAATGCCACCGGTCTCAGGGAAGAGTCACCTTTGCTTCAGTTCCCAATAAGTTCCTCATCTCCATCTGAGACTACCTCAGCCTGGATTTCATTGTTGATATCAATATCAGCATTTTGGTCAAAGCCATTCAACATGTCTCTAGGGAGTTCCAAACTTCCCTACATTTTCCTGTCTTCTTCTGAGTCCTCCAAACTGTTCCAACCTCTGCCTGGTACCCAGTGTGAAAGTTGCTTCCACATTTTCGGGTATCTTTTCATCAGTGCCTTACTCTAATGGTACCAATTTACTATATTAGTCCATTTTCATGCTGCTAATAAAGACATGC;SVTYPE=DEL;CHR2=9;END=28157692;SVLEN=-123393 GT ./. E2654634 contig1 size1049 42 cov6.05 71 29 50.3103448275862 24 58.2916666666667 54 0 0 0 0 39 22 27.2272727272727 9 56.5555555555556 32 0 0 0 0 14 0 15 0
9 35183587 N . <TRA> 28.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCTGCCTTGGCCCCCCAAAGCGCCGAGGTGGCGGCCGCCGCCCGGCCGCCGCCCCGCCTGGGAAGTGATGACCGCCCCTGCCTGGCCGCCCCTCGTCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCATCTGGGAGGTGAGGAGCACCTCTGCATGGATGACACACCATCTGGGAAGTGAGGAGGGCCTCTGCCTGGCCACCCCTTGTCGGGGAGGTGGGGAGCGGCTCTGCCCGGCCACCCCGTCTGGGGTGGGGGGCGCGCCTGCGTCGTGGAGC;SVTYPE=TRA;CHR2=21;END=14752388;SVLEN=0 GT ./. E2381868 contig13 size286 2 cov1.06 122 2 42.5 2 42.5 31 1 60 1 60 121 3 59.6666666666667 3 59.6666666666667 47 0 0 0 0 4 0 8 0
9 42265244 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGATATCAGGCCTCAAGAGGATGGCAGTCACCAGGTAGACATCAGGCCTCAGATAGACACCAAGGTCCCAGATGTACAGCAGGCCCCAACTGAACCCCAGACTCATGTGGACATCAGGCCACAGGTAGACACCAAGCCTTAGGTAGATACCTAACTTCAGGTAGTCATCAGACCCAAGGTGGACACCCAGTCCCCAGGTGGACATTAACCCACAGGTCAACCACAGTCCCCAGGTTGATACCTGGTCCAGATCGGAAGAGCGTCGTGTAGGGGAAGAGTGTAGATCTCGGTGGTCGCCGTAGCCTTAAAAAAGCA;SVTYPE=INV;CHR2=9;END=45426068;SVLEN=3160825 GT ./. E2525464 contig2 size315 3 cov1.44 115 1 0 0 0 36 0 0 0 0 165 3 8 0 0 44 0 0 0 0 21 2 14 1
9 45105579 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACAGAATTGGTGCTCAATGAAGATTTGTCCATCCAGATGAAGAATGGATGGGTGGCTGGATGGGTAGGCAGATGGATGATGAGTGGGTAGATGGGTAGGTGGATGGGTAGATGGGGATAGATGGATGATGAATGGATGAGTGGGTGGGTGGATGGAT;SVTYPE=DEL;CHR2=9;END=47163267;SVLEN=-2057688 GT ./. E173182 contig2 size158 2 cov1.91 70 0 0 0 0 19 0 0 0 0 233 1 25 0 0 71 0 0 0 0 7 0 8 0
9 66783285 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCGTTGGAAACGGGAACGTCTTCATGAAAAACCGCGACAGAACCATTCTCAGACACTTCGTTGTGCTGTGTGCATTCAAGTCACAGAGTTGAATATTCCCTTTCACAGAGTAGGTTTGAAACACTCTTTTTGTAGTATCTGGAAGTGGACATTTGGAGCGCCTTGACACCTACGGTGAAAAGGGAAATATCTTCCCATAAAAACTAGACAGAAGCAATCTCAG;SVTYPE=DEL;CHR2=9;END=67320763;SVLEN=-537478 GT ./. E34900 contig1 size223 2 cov1.35 778 21 0.904761904761905 0 0 240 3 0 0 0 179600 9175 13.6767302452316 1872 43.6431623931624 67182 3139 14.5352022937241 686 43.963556851312 15 1 4 0
9 66783342 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCGTTGGAAACGGGAACGTCTTCATGAAAAACCGCGACAGAACCATTCTCAGACACTTCGTTGTGCTGTGTGCATTCAAGTCACAGAGTTGAATATTCCCTTTCACAGAGTAGGTTTGAAACACTCTTTTTGTAGTATCTGGAAGTGGACATTTGGAGCGCCTTGACACCTACGGTGAAAAGGGAAATATCTTCCCATAAAAACTAGACAGAAGCAATCTCAG;SVTYPE=DEL;CHR2=9;END=67320763;SVLEN=-537421 GT ./. E34900 contig1 size223 2 cov1.35 1204 128 0.453125 0 0 337 31 0.709677419354839 0 0 179600 9175 13.6767302452316 1872 43.6431623931624 67182 3139 14.5352022937241 686 43.963556851312 18 1 4 0
9 66971318 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCAACTCTGTTACTTGAGTACACACATCACAAGGAAGTTGCTGAGAATGCTTCTGTGTGGGTGTCAGGAGTACATACGTCCGCTTTCCCCATCGGCCTCAAAGCGCTGCAAATGTCCACTTCCAAATATTAGAAAAAGAGTGTTTCAAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAGAATGCTTCCGTCTAGATTTTATATGAAGATATTCCCGTTTCCAACGAAATCCACAAAGCTATCGAAATATCCACTTGCAGATTCTACAAAAAGAGTGTTTCAAAACTGCTCTATCAAAAGAAAGGTTTTACCCCTTTAGTTGAGGACACACATCACGAGTA;SVTYPE=INV;CHR2=9;END=69985375;SVLEN=3014058 GT ./. E3742385 contig8 size378 3 cov1.20 1258054 46247 0.0419702899647545 40 38.65 427135 14312 0.0461151481274455 12 40.8333333333333 1342 8 0 0 0 478 1 0 0 0 3 0 4 0
9 69792579 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCTGGGCAGCGCTTTGACATACTTCAAGATGGCTTCTCGGAAGACTGGAGATAGCATCTTCTACAAGAATAGCTGAAAAGCTCATGAGTCCTTTAGGTATCCCCCAGACCAGTCAGAACAGACACATAGTAATTTGCGAGTAACATCTTCTCTTGTTCCTTTCGACCATGGACCAGTGTTCCTCACTGGGAACGTGGGCTCCCGACACTTCAAAACTGCCAATTTGCTGGGGCA;SVTYPE=TRA;CHR2=2;END=91977417;SVLEN=0 GT ./. E4208783 contig11 size236 2 cov1.28 403 23 0.260869565217391 0 0 139 0 0 0 0 440 39 0.153846153846154 0 0 125 0 0 0 0 9 0 15 0
9 70930486 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATACGGCGACCCCCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGCGATATGGCCAGTAATATCATCGTCTCTACCTTTGGATACTAGGAACAACATCACAGAGGGTGTGTACACCCCCTGCGATACTGAGAGTAATATTATGCTCTCCCCTTCGGGATATTAGGAACAATATCTCAGGAGGTGTGTACAACCCCTGTGATAGATCGGAAGAGCGTC;SVTYPE=DUP;CHR2=9;END=70934303;SVLEN=3817 GT ./. E4135329 contig1 size229 2 cov1.32 285 10 17.7 3 46 71 0 0 0 0 149 0 0 0 0 51 0 0 0 0 3 0 3 0
9 83033241 N . <TRA> 18 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCAAATGGCCACACTACCTCTCCAGTAAGTTTATAAATCAGTCCAAGATAGCTAAAATTACAGAAATCAAATTCAGAATATGAATAGAAATAAAGATCATTAAAATGCAGAAGTAACTTGAAACTCAATTCAAAAACGTTAAGAATCATAATGAAATGATACAGGAGCTGAGAGACAAAAGAGCAAGTATTAAGAGCATAACTAACCTGAGAGAGCTA;SVTYPE=TRA;CHR2=11;END=100400425;SVLEN=0 GT ./. E4055928 contig1 size222 2 cov1.36 560 5 6 0 0 112 0 0 0 0 149 65 23.5846153846154 17 45.3529411764706 34 22 21.0909090909091 5 42.8 12 0 12 0
9 83033281 N . <TRA> 18 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCAAATGGCCACACTACCTCTCCAGTAAGTTTATAAATCAGTCCAAGATAGCTAAAATTACAGAAATCAAATTCAGAATATGAATAGAAATAAAGATCATTAAAATGCAGAAGTAACTTGAAACTCAATTCAAAAACGTTAAGAATCATAATGAAATGATACAGGAGCTGAGAGACAAAAGAGCAAGTATTAAGAGCATAACTAACCTGAGAGAGCTA;SVTYPE=TRA;CHR2=11;END=100400425;SVLEN=0 GT ./. E4055928 contig1 size222 2 cov1.36 631 63 4.6031746031746 0 0 134 15 2.6 0 0 149 65 23.5846153846154 17 45.3529411764706 34 22 21.0909090909091 5 42.8 12 0 12 0
9 102243322 N . <TRA> 60 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGCTAAACAGCATGTAGGAAGTCATAGCTGGGGGGATTACACCCCAGGGCCAAGGCCTGGTGAGGTTTCAGGGAGGAGGCCTGCAGGATCTGGGAGGGGAGGGTGGGCGTTTTCTAATGATACGGCCACCACCGAGATCTACACTGATGATTCCCAAATTTACATCTTTAGCTCAGACATCTTAAAAGAATTCCAGGTTTACAAAGCCAACCTCTTACAGGACACCTCCATTTGAATGTCCCATCAGTATTCAAACTCAACACGTCAGAAGCTGAACTTATTA;SVTYPE=TRA;CHR2=15;END=89373300;SVLEN=0 GT ./. E2142865 contig1 size285 3 cov1.59 145 16 56 16 56 28 0 0 0 0 125 2 60 2 60 42 0 0 0 0 0 0 0 0
9 102830541 N . <TRA> 18 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCTCTCTCTGTGCTCTCCTCTTCTGCCAGTCCATGCCGCCCTGCGGTCCCCTTCTCTCCCTCCTCCCTCCATTCTCATCGGACGCTGTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTCTCTGCCCAGCCGCCCATCGTCTGAGACGTGGGGAGCGTCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTACCCGGCCAGCTGCCCCG;SVTYPE=TRA;CHR2=8;END=64092895;SVLEN=0 GT ./. E1037721 contig3 size252 2 cov1.20 102 1 10 0 0 32 0 0 0 0 115 5 38.4 4 48 50 2 55.5 2 55.5 6 0 3 0
9 103011837 N . <DEL> 52.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATATCAATGTCAAATTTTTTTAAAAAATAAAATTTCAATTAAGTAAAAGATAAAATTAATGATCATATTAAAGGAAATTCCCCATTTATGACTATTTGAATTTATTTTTATTTATTTATTTATTTGAGACAGAGTCTCACTCTCTTGCCCAGGCTGGAGTGCAGTGACCTGAGATTGAACCACTGCACTCCAGCCTGGATGACAGAGTGAGACTCCATCTCAAAAAAT;SVTYPE=DEL;CHR2=9;END=103012325;SVLEN=-488 GT ./. E1144265 contig1 size230 6 cov3.94 95 6 47.6666666666667 5 57.2 44 0 0 0 0 92 12 38.75 6 57.3333333333333 33 0 0 0 0 606 208 586 211
9 109131113 N . <TRA> 35.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGGAGAATTTAATTCATTTTTATGTAAGGTAATTATTATAGGTAATAACTTACTATTGACAATTTTCCATTGTTTTTAAACTTTTTTTTCTTTTTATCTTGCTGTCTTCTTTTGTAATTTGATGTTTTTTTTTTTTTTTTGTGTTTTTTTTTGGTTTTTTT;SVTYPE=TRA;CHR2=6;END=107705880;SVLEN=0 GT ./. E2694011 contig1 size163 2 cov1.85 171 17 60 17 60 29 1 60 1 60 92 5 48.6 4 60 53 0 0 0 0 0 0 1 0
9 132732525 N . <TRA> 54.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGACGTGGGGTCCCACTCTGTGGCCCAGGCTGGAGTGCAGTGGCGCGTTCTCGGCTCACTGCAACCTCTGCCTCCTGCATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTGCAGACATGCACAACCAAGCCCAGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCGCCACCTCAAGCAATCCACCCGCCTTGG;SVTYPE=TRA;CHR2=1;END=180444576;SVLEN=0 GT ./. E1124725 contig1 size239 2 cov1.26 139 16 43 11 55.5454545454545 28 1 29 1 29 161 1 48 1 48 41 1 1 0 0 0 1 1 0
9 133448968 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTTGGGAGGCCGAGGTAGGAGAACTGTGCGAACCTGGGATGCAGAGGTTGCAGTGAGCTGAGATTTTGCCATTGCACTCCAGCCTTGGCAACAAGAGTGAAACTCTGTCTTGGAAAAATAAATAAATAATAAATAAATAAATGAACTTCAAACCACAATGAGATGCTACAACACACCTATTAGAATGGCTAAAGTTGGCCAGGCGTGAGCCACCACGCCCAGCAATAAAACTGTTTAAAGAAATATTGGAGCCAGGCGAGGTGGCTCATGCCTGTAATCCTAG;SVTYPE=DEL;CHR2=9;END=133449504;SVLEN=-536 GT ./. E507862 contig2 size285 9 cov4.77 156 12 57 12 57 37 0 0 0 0 90 14 55.5714285714286 14 55.5714285714286 29 0 0 0 0 645 178 630 173
9 137577045 N . <TRA> 3 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCACCCATCCACCCATCCATCCCTCCCTCCACCCACCCCCCCATCCATCCATCCATCCACCCATCCACCCACCCACCTATCCATCCGCCTATTCATCCATCCAACCATCTGTTCATCCATTCATCCATCCATCCATCCATCCACCATCCATCCATCCACATCCATCCATTCATACATCCATCATCCTCCCATTCATCCATCCATCCACCATCCATCCATTCATTCATCCATCCATCCATCCATCCATCCCTCCACCCACCCACCATCCATCCACCCC;SVTYPE=TRA;CHR2=19;END=32576039;SVLEN=0 GT ./. E2029293 contig1 size283 2 cov1.07 365 1 60 1 60 114 0 0 0 0 183 2 15 0 0 51 1 12 0 0 4 0 3 0
X 2955017 N . <TRA> 30 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATTATATATAATATTATATATTATATATAATATTATATATAATACATATAATATTAAAATATATATTATATTATATATAATATTATATATAATATATATTATGTATACTGACTCATAAATACATACTGACTCATATATATATTATATAATTATATAATATATATTAAATTTTATATGTATATTATATATAAAGACTTTAGGTTACTGTTGAGAAGGCATGA;SVTYPE=TRA;CHR2=17;END=66955093;SVLEN=0 GT ./. E932339 contig2 size223 6 cov4.06 9 0 0 0 0 6 0 0 0 0 31 9 53.3333333333333 8 60 10 2 30 1 60 4 0 3 0
X 5654005 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCCTCCTTCCCTCCCTCTCTCCTTCCCTCTTTCCTTGCTTGCTTTCGTGCTTTCTTGCTTTCCTTTCTTTCTCTTTCTTCCTTTTCTTTCTTTCTTTCTTTCTTGCTTTCTTTTCTTTCATTCATTCCTTCTTTCTTTTCTTTCTTTCTTTTCTTTTTCTTTCTTTCTTGCTTTCTTTTCTTTCATTCATTCATTCTTTCTTTCTTTCCTTTCTTTCTTTCTTTCTTTCTATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTTTCGTCCTTTTG;SVTYPE=TRA;CHR2=12;END=70487524;SVLEN=0 GT ./. E3882819 contig2 size286 2 cov1.06 82 0 0 0 0 24 0 0 0 0 105 9 52.4444444444444 8 59 34 1 60 1 60 3 0 4 0
X 6270949 N . <TRA> 30 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATACAATATATATAATATAAAAAAAATATATAAACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATAGAAAGAGAGAGAGAGGATCCATTTGGAATATGTAGGAGAAAGAATTCTGATAGGTGGACTCTCAATTTCTTTTTACTATTCAT;SVTYPE=TRA;CHR2=18;END=10691781;SVLEN=0 GT ./. E2638067 contig3 size203 4 cov2.98 57 0 0 0 0 17 0 0 0 0 71 41 36.219512195122 26 54.1153846153846 44 2 60 2 60 5 0 4 0
X 8789084 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATCATCATCCCATTCATCACTGTCTTTGTCATCACCATCACCATCACCATCATCCTCATCATCACCACATTCACTGTCATCACTATGTTTGTCATCACCATCACCATCATCATCACATTCATCACTGTCTTTGTCATCACCATCATCACCATCACCATCATCCTCATCACATTCACTG;SVTYPE=TRA;CHR2=2;END=232443615;SVLEN=0 GT ./. E4285867 contig1 size180 2 cov1.68 78 7 0.142857142857143 0 0 18 3 0 0 0 211 3 0 0 0 83 2 2 0 0 7 0 14 0
X 31196942 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATGGAAAGCAATAGCCAAACCAAGGTGTAAAGTGAATTAAAAGAAAAACACACAGTTGTGTGACTGCCATCAGAGTTAAGGCAAAAAAGAGGAGCAGGTTGAAAAGAGGTGAAGACGTCCCCTTTGATCTTGAGAATCATTACTACTTACTGTGAAGTAGTTTCCTGTGACTATATTTTCTTTTGAGTAGAAACAAGTGACTAGATATGACCACACAATGAGATACAAAAAGACACACATTTACTGATTTGTGAGAGAGGAAAATCAAAATGAAATACTGGAATCACTCATTTGTAAACAGTCCCATATTTCTTATAAGGCTTGTAAGGCAATTAGTGGCTGTATTGTGTTGTGGTTTTTTTTTTTTTTCCCCCTGTGAGATAAAGTTTAACTTTTGGAAAAAGAAATTGTCAAGTGACGTGGGAAAGTGGCAACTGGACATCAGCTTATTTTTCTCTTTTCAGCTAATGTAAATAAAAAGAAAGAAATAGAAGAGACTGTTTGCATTTGGGAGTGAAGGAGGGTGTTCAGCTGAGAGGAGTTCAAATATACATCAAACAAGAGTGTGTTCTGCTTTTGCTACTACTCACGTTTCCATGTTGTCCCCCTCTAAGACAGTCTGCACTGGCAGGTAGCCCATTCGGGGATGCTTCGCAAAATACCTTTTGGTTCGAAATTTGTTTTTTAGTACCTTGGCAAAGTCTCGAACATCTTCTCCTGATGTAGTCTAAAAGGGAGATCATGGTGAATGTAGTGAATGTAGTGAAGATCGGGGGATAAAAAAGGGATGGTTAATGGGTACAAAAATACAGTAAGAAGAAATATGATCTAGTGTTTGGTAGCACAATAAGGCCACTATAGTAATCAATATATTTTTAAATCTTTTTACAGATAGGG;SVTYPE=DEL;CHR2=X;END=31216211;SVLEN=-19269 GT ./. E2517544 contig2 size898 50 cov8.41 85 48 59.2708333333333 48 59.2708333333333 17 0 0 0 0 47 44 57.9545454545455 44 57.9545454545455 20 0 0 0 0 23 0 19 0
X 31196943 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCACTGGCAGGTAGCCCAGTCGGGGATGCTTCGCAAAATACCTTTTGGTTCGAAATTTGTTTTTTAGTACCTTGGCAAAGTCTCGAACATCTTCTCCTGATGTAGTCTAAAAGGGAGATCATGGTGAATGTAGTGAATGTAGTGAAGATCGGGGGATAAAAAAGGGATGGTTAATGGGTACAAAAATACAGTAAGAAGAAATATGATCTAGTGTTTGGTAGCAAAATAAGGCCACTATAGTAATCAATATATTTTTAAATCTTTTTACAGATAGGGTCTCACTA;SVTYPE=DEL;CHR2=X;END=31216211;SVLEN=-19268 GT ./. E2517544 contig3 size284 2 cov1.06 84 48 59.2708333333333 48 59.2708333333333 17 0 0 0 0 47 44 57.9545454545455 44 57.9545454545455 20 0 0 0 0 23 0 19 0
X 31301203 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCATTATTTTAAAAGGCTTATCTAAAATAAGGTGTTCTTTGAACCAAGTGGAGTCTGATTTCCAATTTTAGAATGTTTCCACATTTAACACTGACATTCATTATCCTGAAAATGAAGGCAGATACACATAATATCTATATGTATTTTAAATAAAATTGGTTCAATAATTTTTCTCAAATTTCATAACTTTTTCTATGAATCAATGTGTCAACTCATTTTTTCAACTTTTCAAACTGAAAGAAATTCCATTGATCTTTAATAATAATGAATTTAATCAAATTATTCATTATTATAAACTCACCAGAAACCAACCCTGTCATCACCTTAATCTTAGACGTTCAACTTCCGGAACTGTAAGAAATACATTTCTGTTGCTTAAGCCACCCAGTGGGTGTTTACCTTGCTTAAGTCATGGATATTTTGAAATTTTTATATACAAACAAAAGTAATGCCAATTAATAATTATATCTATTTAACAACTAGCTATATATTTTATATATCCAAAGTTAATCAACCGAATTGACCCAGTAAGTGTAATCTTTGCTTATGTAAACAATACAAACCCTTAGCTCATTTAGATTGGCTCCAATAAAATATTTTTTAAATTCAGTTAAAGTCTTAAACATGGATCACTTACATAGCAAATATGTGTGCACTACAAATTGCAGCTAATCAATCATTTCTATTTATGTGTGCATACCCTATGACCTGACAATACTACTAGCGAATACTGTTGAGAAATTTTTAAACATGCACTATAAAACATATACAAGAACACATGTGTGTTGTGGTTTGTGATGAACAAAAACATAAAAACAACCCAAATGTCCATACGCATGTAAAATATATACATTGTGTTATATACATACAATGAGTTGCACATTGATCAACGTAAATATGTAAAACAT;SVTYPE=DEL;CHR2=X;END=32038750;SVLEN=-737547 GT ./. E1064547 contig1 size910 43 cov7.14 83 32 57.84375 32 57.84375 31 0 0 0 0 41 32 51.75 28 56.7142857142857 19 0 0 0 0 16 0 16 0
X 32077855 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTCCCATGTTTATTGTAGCATTTTTACAGTAGCCAAGAGGTGTGAACAAACTAAATGTCTATTGACAGGGGAATGTATAAAGCTATGTTATATACATACAATGGAATATCATTCTGCCACAAAAAGGAAATCTTACCATATGCTACAATGTGGATGAATCTTGTAGCCATTTTGCTAAATAAAATAAGCAAGTCGTAAAAGGACAAATACTGCACGCATCCACTTACATGAGGTATCTAAAGTAGTCAAAATTATAGAAACAGAAAGTACAATGGTGGTTGCTAAGGGCTGGAGGAGGGAAGAAATGGTGAGATGCTGTGCAATGGGTATAGACTATCAGGCATGTAGGGTTAAAAAAATTATAAAGATCTGCTATGCAACATTTTGCTTATATTTAACAATACTGTATTGTGCACTTAAAATTTATTAAGAGGGTGGATTTCATTAAAAAAATAAAAACAAGTGCTTCATTAAGAAAAAAACATCTTTTTCAACACATACAATTCTTTGTTAATGAACTTAATCATTGAATGCCAACTGGTTGGGAAATGGTATACCTGACAACATAGAAAGCCATCAGACAGCTAACATGGTATTTGCAACTTCTCGTGAGGGTGGGAGCACCATAAACACATATATGAAGAGATAATAAAAGTCCAAGGCAACAATATAAGATGTAGCATAAGTGACCTCGTAATGAACTGAAATAGATATTAAGTTGATATTAAATGTTGTGTATCAACGGCAGTGTGAGATCATTGTGAACTAGAATAGTGTAGCATATCTTTTGGACTAAGGTAGATTATTCCAGGCTTTAAATTCCGAAATATTTAGAGAGTAAGAAGGACATAGAGAGACCATTCAGACAACAGTTGCAACGGAAGTAGACTTGAAGGCCAGAAAGAGCTCAGCATGCACAGGGATAAAACAGGAAGAGCCCAGTGGGCTCATTTTGGGTTGCTGGGTGGAAACAAAATCTCCTCTATTTGGCTCACAATCACTCTCTCAGTGGTGTGCAAAATGCAATGACTGGCCAGTGAATGATATTTACAATAGCTAGGGATTATCTTAGATTATACAGCCTTCAGCAGAAACATAAACACTTGAACAGAGCAGTGTGAAATAGAAGATAGT;SVTYPE=DEL;CHR2=X;END=32293097;SVLEN=-215242 GT ./. E4423272 contig2 size1135 41 cov5.45 76 33 58.5151515151515 33 58.5151515151515 19 0 0 0 0 36 28 58.6428571428571 28 58.6428571428571 24 0 0 0 0 18 0 19 0
X 32098533 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTTTACTTAATTCACAATGGCTAGGACTTGCCAATGGGTATAGACGCCACCAGAAACTGGTGAACTATTTTTTAAAATCTCATAATATAAGAGGAATCATATTATTAACTGGCCACTATTCTGAGTTTTGAAAAACATTTTACAACTTTAAAAAATGATTCAAATAAAGCAAGGAGACGAGTAATGCAAGTAATGCCAAGTATGACTTGTGTTTATCTAATAATGGACTTTGTTACTTATAGCCACATGGAATTTTAGGGCTGCAAACAACAAGGAGAGGCACCTCCTTCTGTAATCACAGTGTTGCTATAATTACAGACAAAGGTTTGTCAGCATTTCCATTAAAAGAACTTAACTAAGCTGTTAAATGTCCATTAGCCTAATATATGGCTTATAATATCTTAGCTAACTGCATATTAAAAACAAACCATAACATTTTCAAGAACTGTATTTTATCATTTCTTATGATCCCTGCCAACTTACTCACAATATTATCAGTAGCCTAGACATTCACTAAATGCCAACTGTGAACAAGTGAAGCCTTTAAGACTTGGATGGTGTT;SVTYPE=DEL;CHR2=X;END=32201251;SVLEN=-102718 GT ./. E2968266 contig1 size563 22 cov5.90 30 24 56.7083333333333 24 56.7083333333333 20 0 0 0 0 4 31 57.4838709677419 31 57.4838709677419 10 0 0 0 0 18 0 19 0
X 34059778 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAAGATTACCCAATTTACTGGCTGAATAGCCTAAAGATTGATTTTTCTTATATTTAACCAAATGCTTAAATCGCCTCAATCAAGAGTGATATGGTTTGGCTGTGTCCCCACCCAAATCTCATGTTGAACTGTATTTTGCATAACCCCCATGTGTCATGGGAGGGACCCAGTGGGAGGAAATTGAATCATGGAGACAGTTACCTCCATACTGTTCTCATGATATTTAGTGAGTTCTCATGAGATCCAATGGTTTTAGAAGGGGCTTCCCCCGCCTTTGCTCTGCATTTCTCCTTGCTGCTGCCATGTGAAGAAGGACATGTTTACTTCCTGTTCCACCATGATTGTAAGTTTCCTGAGGCCTCCCAGTCCTGTGGAGCTGTGAGTCAATTAAACCTCTTTCCTTTGTAAATTATCCATTCTCAGGTATGTCTTTATTAGCAGTGAGAACAGACTAGTACAAGGGGTGATTTTGTCCCCCAAGGGAAATTTGACCATATCTGGAAATAGTTTTGGTTGTCACAACTGTTGGGTGCTACTGGCATTTCATGGCTGGATGCTAAGGAATCTGTTAATATATTAGGTTGGTGCACAAGTAATTGCGGTTTTTGCCAAATGGCAAAAACCGCAATTACTTGTGCACCAACCTAATACTATAATGCACCAGATGCATTATAGTATGAATGAAGAGACCACCCACAACTTAGGAGAAAATATTTGCAAACCATATGTCTGATAAGGGGCTAATATCCAAAATATATAAGGAACTCA;SVTYPE=DEL;CHR2=X;END=34062705;SVLEN=-2927 GT ./. E2885059 contig2 size768 20 cov3.93 31 27 48.4074074074074 26 49.1923076923077 15 0 0 0 0 0 39 52.025641025641 39 52.025641025641 29 0 0 0 0 17 0 14 0
X 40521679 N . <TRA> 29 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTTTTAGAGACAGAGCCTCATTGTCACCCAGGCTGGAGTGCAGTGGCATGATCAAATCCCACTGCAGTCTTGAACTCCTGAGCTCAAGCAATCCTCTTACCTCAGCCTCACAAGTGTCTGAAAATACAGGCACATGTCTCCCTGCTAACTTTTTTAAATTTTCTTGTAGAGAGAGGGTCTTGCTATAGCTGCTCAAGCTGGTCTCAAACTCCTGGTCTCAAGTAATCCTCCTGCCTTGGCCTTTCAAATCTCAGCCTCCCTGGCC;SVTYPE=TRA;CHR2=3;END=191962919;SVLEN=0 GT ./. E697584 contig1 size266 2 cov1.14 167 0 0 0 0 46 0 0 0 0 171 36 13.1388888888889 1 39 42 14 14.6428571428571 2 35.5 4 0 17 1
X 42828498 N . <TRA> 25 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=6;END=20232263;SVLEN=0 GT ./. E3251915 contig1 size154 2 cov1.96 23 5 45.2 3 60 7 2 46.5 2 46.5 32 1 23 0 0 13 0 0 0 0 4 0 5 0
X 42828518 N . <TRA> 25 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=6;END=20232263;SVLEN=0 GT ./. E3251915 contig1 size154 2 cov1.96 31 12 29.1666666666667 5 60 8 5 38.6 4 48.25 32 1 23 0 0 13 0 0 0 0 4 0 5 0
X 54458403 N . <DEL> 60 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGAGACCATCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTTGCCGGGTGAGGTGGCACGTGCCTGTAATCTCAGCTACTTAGTAGGCTGAGGCAGGAGAACCACTTGAATCCGGGAGGTGGAGGTTGCAGTGGCAAGATCACGACTCACTGCAGCCTCGAACTCCCTGACTCAAGCACTCCTCCCACCTCAGCCTCCCAAGTGTAGCTGGGACTATAGGAGTGCACACCATACCC;SVTYPE=DEL;CHR2=X;END=54458563;SVLEN=-160 GT ./. E1169998 contig2 size254 7 cov4.16 37 7 49.2857142857143 6 55.5 8 0 0 0 0 67 7 55.5714285714286 7 55.5714285714286 16 0 0 0 0 214 62 223 65
X 58477320 N . <DEL> 10.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGATACACATTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTGTTCCGATCTGTCTTTTTGTAGTATCTACAAATGGATATTACCAGTGCTTTGAGGCCTATGGTGAAAAAGGAAATATCCTCACATAAAATTCAGATGGAAGCATTCTTAGAAACTCCTTTGTGATGTGTACATTCATCTCACAGACTTCAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT;SVTYPE=DEL;CHR2=X;END=61876796;SVLEN=-3399476 GT ./. E1230592 contig2 size254 2 cov1.19 3571 14 26.2857142857143 6 45 1002 2 28.5 1 51 340 2 0 0 0 96 1 0 0 0 4 0 4 0
X 58544819 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTGACGGGTGCATTCATCACACAGAGTTGAACCTTTCTTTTGATTGAACATTTTTGAAAAACTCTTTTTGTATAATCTGCAAGTGGATATTTGGAGCGCTTTGAGGCCCTTGCTGGAAAAGGAAATATCTTCCCATAAAATCTAGACAGGTGATTCTGAGAAGCTCCCTTGTGATGCGTTCCTTCATCTCACAGAGTTGTACATTTCTTTTGATTGA;SVTYPE=DUP;CHR2=X;END=61794767;SVLEN=3249948 GT ./. E2885461 contig1 size220 2 cov1.37 2103 74 10.5405405405405 10 37.1 688 26 16.5384615384615 9 36.6666666666667 2951 193 9.65284974093264 23 32.0434782608696 989 59 7.3728813559322 4 30.5 3 0 3 0
X 58563931 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAACCGCATCCCCGCTTGCATTTTTCTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTATCCCAAAGAAGTTTCTGAGAATGCTTCTCTTTAGTTTTTACGTGAACATATACCCGTTTCGACCGAAGGCCAGACAGTGGTCCAAATATCCACTTGCAGATTCTCGAAAAAGAGTGTTTCATAGCTGCTCTTTCAAAAGGAAAGTTCAACTCTGGGAGTTGAATACAAACATCACAAAGTAGTTTCCGAGAAT;SVTYPE=DEL;CHR2=X;END=61700384;SVLEN=-3136453 GT ./. E408083 contig17 size284 2 cov1.06 1158 8 0 0 0 338 5 0 0 0 232 79 0.721518987341772 0 0 68 25 0.56 0 0 24 1 15 0
X 61714921 N . <DEL> 2 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTCCACCACAGGCCTCAAAGCCCTTCAAATGTCCACTTGCAGATTCTAGAATAAGAGGGTTTCAAAGCTGCTCTGTCTAGAGGAAAGTTCAATTCCTGAAGTGGAACGCAAACATCACAAAATAGTTTCTGAGAATGCTTCCATCTAGTTTTTATGTGAAGATTTTCCTTTTCCACCACAGGCCTCAAAGCCCTCCAAATGTCCACTTGCAGATTCTAGAATAAGAGGGTTTCAAAGCTGCTCTGTCTAGAGGAAAGTTCCGTTCCTGCAGTGTAACACAAAA;SVTYPE=DEL;CHR2=X;END=61720883;SVLEN=-5962 GT ./. E78100 contig1 size285 2 cov1.06 3805 7 0 0 0 1020 4 0 0 0 26833 34 4.05882352941176 2 36 11031 12 4.5 0 0 9 0 16 0
X 73787697 N . <TRA> 16 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAATAAAAAAAAAAATAAATAAATAAAAAATAAAAAATAAAAAATAAAAAAATAAAAAAATAAAAATAAAATAAAATAAAAAAAAGGAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAAAAAAAAAAAAAAGGGCTTTTCTGGAAGGGATTCATCTCAGGACCTGGGCCCCTACTA;SVTYPE=TRA;CHR2=2;END=209033488;SVLEN=0 GT ./. E3638027 contig1 size178 2 cov1.70 161 2 0.5 0 0 58 0 0 0 0 203 8 39.5 4 60 56 1 19 0 0 11 0 4 0
X 74490934 N . <TRA> 60 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGACCTCTACAAGAAAAACCACAAAACACTGCTGAATGAAACCACAGATGACACAAACTAACGGAAACACATCTCATGCTCATGGATGCATCGGTAGAGTTAACACTGTTTTTAATGATACGGCGACCACCGAGATCTACACATTCAATGCAATTCTCATCAAAATACTAATATCATTCTTCACAGAATTAGAAAAAACAATTCTAAAATTCATATTGAAGCAAAATAGCCCATATAGCCAAAAAGAATAAATCTGGAGGCATCATATTACCTGGTTTCAA;SVTYPE=TRA;CHR2=7;END=64760488;SVLEN=0 GT ./. E3500465 contig1 size282 2 cov1.07 86 7 58.4285714285714 7 58.4285714285714 25 0 0 0 0 165 5 56.6 5 56.6 40 0 0 0 0 1 0 0 0
X 79792424 N . <TRA> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTTTTTTTTTTTTTTTTTTTTGCGGTTTTAACTAAATCCTAAATTTTTTTTGGGTTACAAGTCCCCAAACTAATGCTTTCAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTAATTTTTTTTTTTTTTAATAGTTTTGGTAAGATATAAATATTTAAAAAGAGGGTATTAATATTTAAATAGTATAGAAAAAAAATATAGCAGTATTT;SVTYPE=TRA;CHR2=8;END=112168232;SVLEN=0 GT ./. E3371248 contig1 size286 2 cov1.06 111 1 0 0 0 43 0 0 0 0 217 64 0.9375 1 60 82 31 0 0 0 6 0 11 1
X 81316121 N . <TRA> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=;SVTYPE=TRA;CHR2=7;END=100388995;SVLEN=0 GT ./. E2890572 contig1 size548 15 cov4.13 83 2 0 0 0 19 1 40 1 40 145 0 0 0 0 42 0 0 0 0 4 0 3 0
X 117178397 N . <TRA> 49.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAAATCCCAAAGCAAGACTGAAAAAAAAAAAAAAAAAAAGGAAAATCAGAAGAATCACATTACCTCACCTCAAATTATACTCTAGAGCTACAGTAACCAAAACAGCATGGTGCTGGAATAAGAAAAGACACATAGACCAATGGAACAGAATAGAGAACCCAGAAATAAATC;SVTYPE=TRA;CHR2=10;END=35224915;SVLEN=0 GT ./. E3010828 contig2 size173 2 cov1.75 51 11 60 11 60 16 1 60 1 60 74 0 0 0 0 25 0 0 0 0 0 0 1 0
X 129697093 N . <TRA> 6.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGCTTCCCTTTCCTTCCCTTCCCTTCCCTTCCATTCCATTACATTACATTCCCTTCCATTCCATTCCATTCCCTTCCATTCCATTCCGTTCCATTCCACTCCGGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTACACTAAATTCCATTCCATTCCACTCCATTACATTCCACTCCACTCCACCCGGATTTATTCCATTCCATTCCATTCCTTTCCATTCCATTCCAGTTGATTCCATTGGATTCCATTCCTATCCAATCCATTTCATTCCTTT;SVTYPE=TRA;CHR2=4;END=49101298;SVLEN=0 GT ./. E4244425 contig16 size281 2 cov1.07 47 1 0 0 0 9 0 0 0 0 6880 17 8.29411764705882 1 43 2037 6 0.833333333333333 0 0 3 0 12 1
X 136015247 N . <TRA> 15 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTCGTGCCTTGTGAAAACTTGCTTATAGACTTTACCAAAATGCCCCGTGCCAGAGGCTATCCGTTTATGCTAGTGTTTATTTGCACTTTTTCAGGATAGGTTGAGGCATTCCCCACCAAGACAGAAAAGCACGAGAAATGACTAAAGTACTACTAAAAGACATTATCCCTAGGTTTTGACAGCCTGTAACTTTAAAGTCAGACAATAGGCCAGCATTTGTAGCTGAAAGAGT;SVTYPE=TRA;CHR2=13;END=99419389;SVLEN=0 GT ./. E2597747 contig1 size234 2 cov1.29 88 21 5.71428571428571 1 31 30 5 0 0 0 217 52 5.01923076923077 3 33.6666666666667 73 8 4.5 0 0 5 0 3 0
X 141107439 N . <TRA> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGTCACCCGCCAACACATCCTACTAATTTTTTGTGTTTTTAGTAGAAATGCGGTGTCGCCATGCGGCCCAGGCTGGTCTTGAACACCTGACCTCATGATCCACCTGCCTCCACGGCTGAAAGTGCTGGGATTACAGACTTGATCAACCGCGCCCAGCCAAATATCTTCTTTTGAAAAGAGTCTGTTTATATTCTGTGCCCACTTTTTGATGGTTTTTTTTTGTGTGTGTGTGAATTTGTTTAAGTTCTTTGTAGATTCTGGATATTAGACCTCTGACACATGGATAGAGTGCAAAAATTTTCTTTCACTCTGTAGGTTGCCTGGTCACTCTGGTGATAGCTTCTTTTGCTGTGCAGAAGCTCGTTAGTTTAGTTAGATCTCATTTGTCAATTTTAGCTTTTGTTGTGAT;SVTYPE=TRA;CHR2=1;END=25075504;SVLEN=0 GT ./. E2356643 contig1 size410 7 cov2.58 407 20 0 0 0 102 3 0 0 0 76 0 0 0 0 32 0 0 0 0 20 1 19 1
X 148502574 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCCCGCCGGCCGCCCCGTACGGGGCGGCGGCCGGGGGGCCGCCCCCTCGCCCCCCCCGCCTTTTTTAATGATACGGCGACCGCCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGCCCGGCCAGCCGCCCCGTCCGGGGGTCGGAAGAGCGCACGTCCGCACCCCCGTCCCGACCGGCCCGCGTGGGCCGGCGTCGGCTTGAACAGCCCCCCGCCCCGCCAGCCGCCCCGTCCGGGAGGGCGGCGGGCGGGCCGGCCCCCCGC;SVTYPE=TRA;CHR2=2;END=135791036;SVLEN=0 GT ./. E4088450 contig1 size277 2 cov1.09 77 1 15 0 0 22 0 0 0 0 115 24 16.625 9 39.4444444444444 45 12 19.5833333333333 5 40 13 1 5 0
Y 5009128 N . <TRA> 20.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCTGAGATCACGCCACTGTACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCAAAAAAAAAAAAGGGAGAAAAGGGGCCAGGGATTATTTGGAGCAATGGCTGATTCCAGCCTAAAACAGAAAATGTATGTGATAAGCCAGGACCTCTTATAGCACAAAACAAGGAAAGTGCTCAAAAAAAGCATGGTGGCAGGAGATGACTTGAAGTGCTATGAACTGATGAATCCGGGATACTTCGATCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT;SVTYPE=TRA;CHR2=12;END=129771777;SVLEN=0 GT ./. E1387302 contig1 size347 15 cov6.53 33 19 4.78947368421053 1 54 23 0 0 0 0 100 46 32.2173913043478 24 60 43 0 0 0 0 18 0 16 0
Y 9956770 N . <TRA> 20.5 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATACCCCCTCTCCGCGGCGTCGCCTTTCCTAAGCCCCTCGCGCCACCTTACGACAAACACCCACAGGTGTGGAGGGGCACCCCACCCCTACACTATGTGAGGGACAAACCTTCAGACCACAGCAGGAGTGTTCTGGAATCCCCTGTGAGGAACAAACATTCAGACCCTCGTAGCAGTGTTCTGAAATCCTATGTGACAAACGTTTAGA;SVTYPE=TRA;CHR2=11;END=10412852;SVLEN=0 GT ./. E875733 contig1 size209 2 cov1.44 8300 185 18.4864864864865 41 39.4634146341463 2448 41 16.0243902439024 8 34.125 112 47 0.0425531914893617 0 0 32 8 0 0 0 4 0 23 0
Y 13138838 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAGGGATGGAATCGAGTGGGGAGGGGTGGAATGGAATGGAGAGGAATGGTATGGAATGGAATGTAGTGGAAGGGAATGGGATGAAATGGAGTGGAGGGGAATGGAGTGGAATGGAATGGAGTGGAATGGAGTGGAGTGCAAGGGAGTGTAATGAAGTGGAGAGGAATGGAAGGGAATGGAATGGATTGTAGCGGAATGG;SVTYPE=INV;CHR2=Y;END=28812153;SVLEN=15673314 GT ./. E3680192 contig5 size201 2 cov1.50 5276 45 2.93333333333333 1 36 1737 14 1.21428571428571 0 0 401 19 0.526315789473684 0 0 210 5 3.6 0 0 3 0 3 0
Y 13139549 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCCCCTCCACCCCACTCTACTCTACTCCACTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCCCCTCCACTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCCACTCCACTCCACTCCACTCCATTCCATTCGGGTTGATTCCATTCCATTCCATTCCATCCCAATCGGTTTGATTCCTCTCCATCCCAATCCATTCCATGCCGTTACAGTCCAGTCCATTCCATTGCACTTGGGTTGATTCCATTCCATTCCATTCCATTCCATTACATTACATTCCATTCCACTAAATTCCATTCCATTCCACTCCATTACATTCAATTCCACTCCACCCGGATTTATTCCATTCCATTCCATTCCATTCCAGGTGATTCCATTGGATTCCATTCC;SVTYPE=INV;CHR2=Y;END=13858759;SVLEN=719211 GT ./. E1240358 contig4 size408 3 cov1.11 4304 87 3.68965517241379 1 40 1442 34 4.73529411764706 1 30 2316 134 2.3134328358209 1 31 899 41 6.51219512195122 0 0 3 0 3 0
Y 13196469 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGAATGGAATGGAGTCGACAGGAGGGCAATGGAATGTAATGGAAAAGAAAGGAATGGAATGTAGTGGAGTGCAGTTGAGTGGAATGGAGGGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGACTCAAAGGGAATGTACTTGAATGGAATGGAATAGTTTGGAAAGGAATCC;SVTYPE=INV;CHR2=Y;END=13818202;SVLEN=621732 GT ./. E3967968 contig1 size183 2 cov1.65 1755 71 6.50704225352113 0 0 585 12 6.5 0 0 1581 60 1.63333333333333 1 60 641 22 0.5 0 0 6 0 3 0
Y 13253178 N . <TRA> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAAAATTCGCCGCCAAGAAGCGTTCCTGGTTCCCCCACGGACGAAAGTGCCTTCCCGTCAGTCCCTGCGCTGGGCCTGGGATACTCTGGCGGCCCTGGCTCGAACCCAGAGAGCGACTCAGGCCCGCTAGGGGTACGCCAAAGCGGGCAGAAGGCCCCGGAGGGGAAGGTTAGGTTTGAGGAAAGGGAGGTGAGGCACCGGTGGATGAAAAAAAAAAAAGAAAAAAACTCAGCGTCGAGACGCATTCCTGGGTCCCCCACGGAAGAAAGTGC;SVTYPE=TRA;CHR2=1;END=143276426;SVLEN=0 GT ./. E1985445 contig1 size275 2 cov1.10 231 7 6.14285714285714 0 0 80 2 20 1 40 183 1 52 1 52 55 0 0 0 0 3 0 12 1
Y 13453699 N . <INV> 1.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAATGGAATCGAATTGAATGGAAAAGAATCGAAAGAAATGGAAAGGAATGGAACAGAACGGATTCGAATGGAAAGGAATGGAATCTAATGGAATGGACTGGAAATGAATGGATTCGAATGGAATGGAATCGAATGGAATGGAGTCATATGGAATGGAATGGAATGGAACAGTCTCAAGTGGAATGGAATGGAATAGAATGGAATGGAATAAAATGAAATTGAATGGAATCTCATGGAATTGAATGGAATGGAATGGAAT;SVTYPE=INV;CHR2=Y;END=13722283;SVLEN=268583 GT ./. E138636 contig1 size260 2 cov1.16 66914 471 5.52653927813163 30 35.3666666666667 22166 176 5.55681818181818 13 39.0769230769231 39 27 10.4074074074074 3 33.6666666666667 330 11 13.4545454545455 2 41 7 0 11 1
Y 13649005 N . <DUP> 20.5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTACCATGGCATGGCATGCGATGGAATGGAATGGAATCGAAAGGAAAGCAGCGGAAGGGAATGGAGGGGAATCAAGTGGAAAGGAATGGAATGGAATGGAATGTAAAGGAATGGAATGGAATCGAATGGAATGGACTGGAATGGAATGGATTGAACGGAATGGACTGGGGAGGAATGGACTCGGATGGAAAGGAAACGAGTGGAATGGAATGGAGTGGAATGGGTTGGAATGGAAAGGAAAGGAAAAGAATGGAATGGAATGGGATGGCATGG;SVTYPE=DUP;CHR2=Y;END=13853013;SVLEN=204008 GT ./. E1311706 contig1 size273 2 cov1.11 8974 191 1.76439790575916 0 0 3786 97 3.68041237113402 4 37.75 255 28 2.39285714285714 1 40 110 11 3.63636363636364 0 0 4 0 5 0
Y 13653714 N . <DEL> 6 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTATGGAATGGAATCGAAAGGAAAAGAATTGAATGGAATGGACTGGAACAAAATGGAATTGAACGGATTGGAATCGAACAGAATGAAACGGAATGGAATGGAATGGAATGGAATGGACTGCAGCGGAATGGAGTCGAATGGAAAGTAATCGAATGGAATG;SVTYPE=DEL;CHR2=Y;END=13664646;SVLEN=-10932 GT ./. E949797 contig1 size160 2 cov1.89 121 2 11 0 0 72 0 0 0 0 157 46 6.04347826086957 0 0 66 41 4.95121951219512 0 0 5 0 6 0
Y 13658875 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATAAGAAATGAAAAGAATGTAATGGAATCGGATGGAATGGAATTGAATGTATTGGAGTCGAGTAGAACAGAATTGAATGCAATGGCATCAAATGGAATGCAAACGAAAGGAATGGAATTGAATGGACTCAAATGTTATGGAATCAAAGGGAATGGACTCAAATAGAATGGACTCAAAAGAAATGGTCTTGAATGGAACTTATTCGAATATAATGTAATCGAATGGAATGCAATAGTATGGAATGGAATCGAATGGAATGGAATCGAATGGATTGGAACGAAATCGAATGGAACGGAATAGAATAGACTCGAATGTAATGGATTGCTATGTAATTGATTCCAAAGGAATGGAATCGAATGGAATGCAGTCCAATGGAATGGA;SVTYPE=DEL;CHR2=Y;END=13662021;SVLEN=-3146 GT ./. E1007397 contig1 size381 4 cov1.59 6747 297 1.95286195286195 7 34 2618 112 2.03571428571429 1 29 390 37 5.13513513513514 2 32 182 12 1.83333333333333 0 0 3 0 3 0
Y 13664421 N . <DEL> 1 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTGGAACGGAAATCAATGGAATGGAATAGAATGCAATGCAATGGAAAGGAATGGAGTGGAATCGACAAGAATGGAAAAGATTGGAATGGAATTGAATGGAATGGAATCGAATGGAATGGACTGGAATGCAATGGACTAGAATTGAATGAATAGGAATGGAACGGAACGGAATGTAACGGAATGGAATGGAATGGAATCGAATGTAATGGAGTCGAATGGAATGGAACCAAATTGAATGAAATCGAATGGAAAGGAACTTAATGTAATCGAAAGG;SVTYPE=DEL;CHR2=Y;END=13834564;SVLEN=-170143 GT ./. E3274699 contig1 size276 3 cov1.64 1838 31 2.87096774193548 0 0 628 10 8.2 1 31 185 13 5.61538461538461 1 40 88 2 0 0 0 4 0 4 0
Y 13683089 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGATTGAACGGAATGGACTGGAGAGGAGTGGACTCGACTGGAAAGGAAACGAGTGGAATGGAGTGGAATGGCTTGAAATGGATAAGAAATGAAAAGAATGTAATGGAATTGGATGGAATGGAATTGAATGTATTGGAGTCGAGTAGAACAGAATTGAATGGAATGGCATCGAATGGAATGGAAACGAAAGGAAGGGAATTGAATGGACTCAAATGTTATGGAATCAAAGGGAATGGAGTAAAATAGAATGGA;SVTYPE=DEL;CHR2=Y;END=13863356;SVLEN=-180267 GT ./. E2110502 contig1 size254 2 cov1.19 247 3 0 0 0 126 1 0 0 0 1058 104 1.48076923076923 2 40 392 62 4.54838709677419 4 54.5 6 0 3 0
Y 13683134 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGATTGAACGGAATGGACTGGAGAGGAGTGGACTCGACTGGAAAGGAAACGAGTGGAATGGAGTGGAATGGCTTGAAATGGATAAGAAATGAAAAGAATGTAATGGAATTGGATGGAATGGAATTGAATGTATTGGAGTCGAGTAGAACAGAATTGAATGGAATGGCATCGAATGGAATGGAAACGAAAGGAAGGGAATTGAATGGACTCAAATGTTATGGAATCAAAGGGAATGGAGTAAAATAGAATGGA;SVTYPE=DEL;CHR2=Y;END=13863356;SVLEN=-180222 GT ./. E2110502 contig1 size254 2 cov1.19 375 31 0.548387096774194 0 0 163 13 4.84615384615385 1 53 1058 104 1.48076923076923 2 40 392 62 4.54838709677419 4 54.5 6 0 3 0
Y 13693196 N . <DUP> 12 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGTATTGGAATGGAAACGAATGGAATGGAATGGACTTGAACGGAATAGACTGGAACGTAGTGGACTGGAAAGGAATGGACGGGAATGAAATGGAATCGAATGACGTGGATTGAAATGGAATGGAATCGAAAGGAATGGAATCGAATAGAATGGAATCTAATGGAATGGCAACCAATGGAATGTAATAGAATGGAATGGATACAAATGGAATGGAAACGAATGGATTGGAATCGAATTGAATGTAATTGAGAGGAATGTAATGGAATGTAATGGAATTGAG;SVTYPE=DUP;CHR2=Y;END=13855103;SVLEN=161907 GT ./. E510670 contig1 size282 2 cov1.07 820 0 0 0 0 948 0 0 0 0 877 82 0.98780487804878 0 0 361 18 1.66666666666667 0 0 3 0 3 0
Y 13720474 N . <INV> 2 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCAATTCCTTTCCATTAGATTCCATTCCATTCGATTGCATTCCATTCGAGTCCATTCCTTTCGAGTACATTCCATTCGAATCCATTCCATTGGAGTCCATAGCATTCCATTCCATTACATTAGAGCCCATTCCATTCCATTCCATTCTATTCTGTT;SVTYPE=INV;CHR2=Y;END=58972228;SVLEN=45251753 GT ./. E432530 contig1 size159 2 cov1.90 5309 112 1.42857142857143 1 29 1821 47 1.36170212765957 0 0 2044 119 12.4957983193277 10 53.5 660 39 10.3333333333333 2 57 3 0 4 0
Y 13721547 N . <DUP> 5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACCGCATCTCCTTCCCTTGAAGACGCTGTTCCGGAATGGAATGGAATGGAAAGGAATGGAATCGAATGGAATGAAACTGAATGCAAGGGAATGGAATGGAATCATCCGGAATGGATTGGAATGGAATGGAATGGAATGGAATGGAATCGAATGGAATCAACCTGAGTGCAGGGGAATGGAATGGAATGATCCGCAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCGGATGGAATGGGCTGGCGTGGGATGTCATGTCAGGGACAG;SVTYPE=DUP;CHR2=Y;END=13842667;SVLEN=121120 GT ./. E4289407 contig1 size276 2 cov1.09 7 0 0 0 0 229 2 0 0 0 618690 4939 12.6914355132618 994 40.2665995975855 191855 1486 13.4932705248991 323 40.7987616099071 4 0 4 0
Y 13721590 N . <DUP> 5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACCGCATCTCCTTCCCTTGAAGACGCTGTTCCGGAATGGAATGGAATGGAAAGGAATGGAATCGAATGGAATGAAACTGAATGCAAGGGAATGGAATGGAATCATCCGGAATGGATTGGAATGGAATGGAATGGAATGGAATGGAATCGAATGGAATCAACCTGAGTGCAGGGGAATGGAATGGAATGATCCGCAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCGGATGGAATGGGCTGGCGTGGGATGTCATGTCAGGGACAG;SVTYPE=DUP;CHR2=Y;END=13842667;SVLEN=121077 GT ./. E4289407 contig1 size276 2 cov1.09 8 0 0 0 0 251 3 0 0 0 618690 4939 12.6914355132618 994 40.2665995975855 191855 1486 13.4932705248991 323 40.7987616099071 4 0 4 0
Y 13721946 N . <DUP> 5 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGAGTGGAAGGGAAGGGAAATGAAAGGAATTGAATGGAATGGAATGGACCGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGTATCTACCCGAGTGCAGGGGAATGTAATGGAACGGAATGCAATGGAATGGAATCATCCGGAATGGAACGGAATGGAATGGAATGGAATGGAATCAACCCGAGTGCAATGGAATGGAGTGGAATGGAATGGAATGGAATGGAACAACCCGAATGGAATGGAATGTAATGGAGAGTAAGGGAGATGAATAGAATCAATCCGAATGTAATGGAATGGAAAGGAACGGAAGGGAATTGAAAGGAAAGGAATGGAATGAAATA;SVTYPE=DUP;CHR2=Y;END=13842632;SVLEN=120686 GT ./. E3958330 contig1 size360 3 cov1.26 20 0 0 0 0 316 2 0 0 0 27133 19286 15.2141968267137 4483 41.5378095025652 8257 5969 14.7704808175574 1330 41.1736842105263 23 1 3 0
Y 13722498 N . <DEL> 18.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCTCGAATGGAATGGAATCGAATGGAATGATATCAAATGGAATTGAATGGAACGGAAAAGATTGGAGTGGTATGGAATGAAATTGACACAACTGAATTGACTGGAATGGAATGGAATGTACTCGAATGAAATGGACTGAATGGAATGGCCTCGAAAGGAATGGAGTCGAATGGAAAGGAATCGAAAGGAATGGAATCCAATGGAATGGAATTACAAGGAATGGAAATGAATGGAATGGAATCAAATGGATGGGAATCGAATGGAATGGAA;SVTYPE=DEL;CHR2=Y;END=13809897;SVLEN=-87399 GT ./. E689906 contig2 size271 3 cov1.67 8 2 0 0 0 89 0 0 0 0 2596 250 6.412 3 33 870 88 6.82954545454545 1 29 9 0 6 0
Y 13722562 N . <DEL> 18.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCTCGAATGGAATGGAATCGAATGGAATGATATCAAATGGAATTGAATGGAACGGAAAAGATTGGAGTGGTATGGAATGAAATTGACACAACTGAATTGACTGGAATGGAATGGAATGTACTCGAATGAAATGGACTGAATGGAATGGCCTCGAAAGGAATGGAGTCGAATGGAAAGGAATCGAAAGGAATGGAATCCAATGGAATGGAATTACAAGGAATGGAAATGAATGGAATGGAATCAAATGGATGGGAATCGAATGGAATGGAA;SVTYPE=DEL;CHR2=Y;END=13809897;SVLEN=-87335 GT ./. E689906 contig2 size271 3 cov1.67 30 0 0 0 0 96 0 0 0 0 2596 250 6.412 3 33 870 88 6.82954545454545 1 29 8 0 6 0
Y 13723587 N . <INV> 0 PASS PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCAATAGAATCGAATGGAATGGACTCGATTGGAATGGACTGGAATGGAATGGATTCAAAAGGAATGGAATAAAATGGAATGCAATCGAATGGAATGGAATCGAATGGAATGGAACGGAATGGAATGGAATGAAATGGAATGGAATGATATGGAC;SVTYPE=INV;CHR2=Y;END=58972951;SVLEN=45249365 GT ./. E1984915 contig2 size155 2 cov1.95 333 24 0 0 0 207 8 5.75 0 0 31181 282 3.37234042553191 8 36.625 13373 114 2.23684210526316 1 29 3 0 3 0
Y 13747899 N . <DUP> 10 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTTAAAGTCCATTCTATTCCATTCCATTCATTTCCATTCCATTCGAGTAAAGTCCACTCCAGTCCTTTCCATTCCAGTCCATTCCTCTCCAGTCCATTCCGTTCAATCCATTCCATTCCAGTCCATTCCATTCGAGTCCGTTCCATTCCATTCCATTCCATTGGAGTCAATTCCATTCCGTTCGATGTCTTTCCATATCGCTCCATTCCCTGCTATTCCTTTCGATTCCATTCCATTCTGTTTCATTCCATTCGTTTCCATCCCATTGTA;SVTYPE=DUP;CHR2=Y;END=13859940;SVLEN=112041 GT ./. E1881669 contig3 size272 2 cov1.11 292 2 7.5 0 0 207 1 0 0 0 124557 270 7 15 39.5333333333333 55459 108 8.64814814814815 13 37.0769230769231 17 1 6 0
Y 13806615 N . <INV> 14.5 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACCTCCATTCCGTGCCATTCCACTCCTCTCCGCTGCACTGCACTCCACTGCCCTCCCTTCCACTCCATCCCATTCCATTCTGCTCCATTCCTCTGCATTCTTCGCGACCCCCCTCATCTCCACTCCATCCCACTCCATTCCATTCCATTCAATTCCATTCCATTACAATTCGTTCCATTCCATTCTTTTCCGTTCGATTCCATTCCATCCCATACCATTCCATTCCTTTCCTTCCCTTTCCGTTCCTTGCCTTTCCATTCGGTTCTCTCCCATTCACTTCGGTT;SVTYPE=INV;CHR2=Y;END=58975913;SVLEN=45169297 GT ./. E2197631 contig1 size285 2 cov1.06 604 3 0 0 0 216 1 0 0 0 3855 62 28.6451612903226 33 45 1269 32 28.9375 18 43.5 7 0 3 0
Y 13811870 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCGAATGGAATGGAATCGAATGTAATGGAACCAAAAGGAATGGAATGGGATAGAATGGAATGCAATGGAATGGAATGGAGTAGAATCAATTGGAATGGAATGGAATCGAATGGACTGGAATCGAATGGAATGGAATGGAATTGAATGGAATTGATTCGAATGGAATGGACTCAAGAGGAATGGTCTTGAATGGAATTTATTCGAAGAGAATGGAATGAAATTGAATGCAATAGTATGGAATGGAATCGAATGGAATGGACAGGAATGGAATGGAATGGAA;SVTYPE=INV;CHR2=Y;END=58974099;SVLEN=45162228 GT ./. E2562377 contig1 size282 2 cov1.07 1603 83 2.83132530120482 1 40 592 21 1.0952380952381 0 0 3168 13 0 0 0 1031 5 1 0 0 10 0 22 2
Y 13816660 N . <DEL> 4 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGGGAAGGAAAGGAAAGGAAACCACCCGAATGGAATGTAATGTAATGGAGTGTAAGGGAATTGAATAGAATCAATCCGAATGTAATGGAATGGAATGGAACAGAATGGAATGGAATGGAATCGAATGGAATGGAATGGAATGCAATGGAATGGGATCAACCCGAATGCAGGGGAATGGAATGGAATGGAATGGAATGGAATGGAGATCGGAAGAGCGGCGTGGAGGGAAAGAGTGTAGATCTCGGTGGACGCCGTATCATTAAAAAAGAGGGGAAGGGG;SVTYPE=DEL;CHR2=Y;END=13865744;SVLEN=-49084 GT ./. E1219686 contig1 size281 2 cov1.07 2143 42 0.571428571428571 0 0 745 6 0 0 0 186 322 2.42546583850932 2 32 86 101 1.21782178217822 0 0 8 0 5 0
Y 13822987 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGAAGGCAGTGGAGGGGAGGAGAGTGGAAGGGATTAGGAATGGAATGGAATGGGAAGAAAATGAATTGAACAGGGTGGAGTGGAGTAGATAGGAATGGAGTGGAGTAGAATCGAATGGAATGGAATGAAATGGAAAGCAAAGGAACTGAGTCGAGTCAA;SVTYPE=DEL;CHR2=Y;END=28801367;SVLEN=-14978380 GT ./. E3369566 contig1 size161 3 cov2.81 569 10 0 0 0 195 4 4.75 0 0 613 55 5.4 2 41.5 217 8 12.625 1 41 5 0 6 0
Y 13825956 N . <DEL> 23.5 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAGTGTAGTGGAGTGGAATGGAATGCAGTAGAGTGGAAAGGAATGGAGTGGAGTTGAAAGGATCGGAGTGGAGAGGAGTAGAATTGAGTGGAGTGAAGAGGAGTGGACTGGAGTTTAGTGGCGTGGAGTCGCGTGGAACAGAATGGAACGGAAAGGAATGGAATGGAGTAGAATGGAGAGGAATGGAATGGAATGGAGTTAAATGGAATGGAGTTGAACGGAATGGAGCAGAATGGAATGGAGTGAGGGGGAATGGAATGGAATGTAGTGGAGTGGAATGG;SVTYPE=DEL;CHR2=Y;END=28800257;SVLEN=-14974301 GT ./. E4173663 contig3 size283 2 cov1.07 1162 48 1.10416666666667 0 0 431 17 4.76470588235294 1 60 12698 151 2.49668874172185 3 40.3333333333333 4138 69 2.28985507246377 0 0 6 0 9 0
Y 13847354 N . <DEL> 0 PASS PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGGAGTGGAAACGAATGGAATGGAGTGGAATGGAATGGAAAGGAATGAAATGGAATTGATTGGAATGGAATCGAATGAAATGGAGTTGAATGGAATCAAAAGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTA;SVTYPE=DEL;CHR2=Y;END=28800230;SVLEN=-14952876 GT ./. E3814861 contig1 size199 2 cov1.52 816 27 29.1851851851852 17 41.4117647058824 306 8 28.875 5 43 11626 36 5.30555555555556 2 36.5 3755 21 3.42857142857143 1 44 5 0 5 0
Y 13847395 N . <DUP> 0 PASS PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGGAGTGGAAACGAATGGAATGGAGTGGAATGGAATGGAAAGGAATGAAATGGAATTGATTGGAATGGAATCGAATGAAATGGAGTTGAATGGAATCAAAAGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTA;SVTYPE=DUP;CHR2=Y;END=28800230;SVLEN=14952835 GT ./. E3814861 contig1 size199 2 cov1.52 526 8 0.25 0 0 193 3 0.666666666666667 0 0 11626 36 5.30555555555556 2 36.5 3755 21 3.42857142857143 1 44 5 0 5 0
Y 13858372 N . <INV> 0 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTCCATTCCATTGGATTCCATTCCATTCTATTTCATTCCTTTGGATTCCATTCCAATGGAGCCCACTACATTCGAGTCCTTTCCAATCCATTCTATTCCTTCCCATTCCATTCCATTTCATTCCATTCGGTTATATTACATAACATTGAAAGCCATTCCATTCAAATACATTCCATTACAATCAACTGCATTCCAGCCCATTACATTCAAGTCCATTCCTTTCCATTCCATTCCAATCCATTTTATTCCATTCGAGTCCGTTCCATTCGAGTCCATTGAATTCCAGCCCATA;SVTYPE=INV;CHR2=Y;END=58912919;SVLEN=45054546 GT ./. E1338971 contig1 size293 10 cov5.15 1150 193 2.82901554404145 4 49 449 70 3.95714285714286 4 36.75 1841 217 1.75115207373272 4 41.25 1659 58 2.3448275862069 1 40 7 0 6 0
Y 13861275 N . <TRA> 23 PASS PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAATGGAATGGAATGGGATGGAATGGAATGGCATGGAATGGCTAAACGAAATGTGAGTTAAGATTGTACCACTGGACTCCAGTCTGGGTGACATTGTGAGATCCAGTCGAAATAAAGGAATGGAAAAGAGTAGAAAGGAATAGAATAGAGGGGAGAGGAAGGGA;SVTYPE=TRA;CHR2=5;END=56426678;SVLEN=0 GT ./. E1187630 contig2 size164 2 cov1.84 1260 119 1.66386554621849 0 0 492 36 0.75 0 0 140 4 3.5 0 0 55 0 0 0 0 4 0 15 1
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