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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/BreakpointGRanges.R
\name{extractBreakpointSequence}
\alias{extractBreakpointSequence}
\title{Extracts the breakpoint sequence.}
\usage{
extractBreakpointSequence(gr, ref, anchoredBases, remoteBases = anchoredBases)
}
\arguments{
\item{gr}{breakpoint GRanges}
\item{ref}{Reference BSgenome}
\item{anchoredBases}{Number of bases leading into breakpoint to extract}
\item{remoteBases}{Number of bases from other side of breakpoint to extract}
}
\value{
Breakpoint sequence around the variant position.
}
\description{
Extracts the breakpoint sequence.
}
\details{
The sequence is the sequenced traversed from the reference anchor bases
to the breakpoint. For backward (-) breakpoints, this corresponds to the
reverse compliment of the reference sequence bases.
}
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