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|
##fileformat=VCFv4.1
##fileDate=20200405
##source=GenerateSVCandidates 1.6.0
##reference=file:///home/cameron.d/projects/colo829/ref/Homo_sapiens.GRCh37.GATK.illumina.fa
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=6,length=171115067>
##contig=<ID=7,length=159138663>
##contig=<ID=8,length=146364022>
##contig=<ID=9,length=141213431>
##contig=<ID=10,length=135534747>
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=133851895>
##contig=<ID=13,length=115169878>
##contig=<ID=14,length=107349540>
##contig=<ID=15,length=102531392>
##contig=<ID=16,length=90354753>
##contig=<ID=17,length=81195210>
##contig=<ID=18,length=78077248>
##contig=<ID=19,length=59128983>
##contig=<ID=20,length=63025520>
##contig=<ID=21,length=48129895>
##contig=<ID=22,length=51304566>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##contig=<ID=MT,length=16569>
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="CIGAR alignment for each alternate indel allele">
##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakend">
##INFO=<ID=EVENT,Number=1,Type=String,Description="ID of event associated to breakend">
##INFO=<ID=HOMLEN,Number=.,Type=Integer,Description="Length of base pair identical homology at event breakpoints">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical homology at event breakpoints">
##INFO=<ID=SVINSLEN,Number=.,Type=Integer,Description="Length of insertion">
##INFO=<ID=SVINSSEQ,Number=.,Type=String,Description="Sequence of insertion">
##INFO=<ID=LEFT_SVINSSEQ,Number=.,Type=String,Description="Known left side of insertion for an insertion of unknown length">
##INFO=<ID=RIGHT_SVINSSEQ,Number=.,Type=String,Description="Known right side of insertion for an insertion of unknown length">
##INFO=<ID=BND_DEPTH,Number=1,Type=Integer,Description="Read depth at local translocation breakend">
##INFO=<ID=MATE_BND_DEPTH,Number=1,Type=Integer,Description="Read depth at remote translocation mate breakend">
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic mutation">
##INFO=<ID=SOMATICSCORE,Number=1,Type=Integer,Description="Somatic variant quality score">
##INFO=<ID=JUNCTION_SOMATICSCORE,Number=1,Type=Integer,Description="If the SV junctino is part of an EVENT (ie. a multi-adjacency variant), this field provides the SOMATICSCORE value for the adjacency in question only">
##FORMAT=<ID=PR,Number=.,Type=Integer,Description="Spanning paired-read support for the ref and alt alleles in the order listed">
##FORMAT=<ID=SR,Number=.,Type=Integer,Description="Split reads for the ref and alt alleles in the order listed, for reads where P(allele|read)>0.999">
##FILTER=<ID=MaxDepth,Description="Normal sample site depth is greater than 3x the median chromosome depth near one or both variant breakends">
##FILTER=<ID=MinSomaticScore,Description="Somatic score is less than 30">
##FILTER=<ID=MaxMQ0Frac,Description="For a small variant (<1000 bases) in the normal sample, the fraction of reads with MAPQ0 around either breakend exceeds 0.4">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INS,Description="Insertion">
##ALT=<ID=DUP:TANDEM,Description="Tandem Duplication">
##cmdline=/home/cameron.d/projects/gridss-purple-linx/manta/colo829_3/../bin/manta-1.6.0.centos6_x86_64/bin/configManta.py --normalBam=/home/cameron.d/projects/colo829/COLO829v003R_dedup.realigned.bam --tumourBam=/home/cameron.d/projects/colo829/COLO829v003T_dedup.realigned.bam --referenceFasta=/home/cameron.d/projects/colo829/ref/Homo_sapiens.GRCh37.GATK.illumina.fa --runDir=/home/cameron.d/projects/gridss-purple-linx/manta/colo829_3
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT COLO829R COLO829T
1 224938488 MantaBND:5:671:677:0:0:0:0 A [9:137177507[A . PASS SVTYPE=BND;MATEID=MantaBND:5:671:677:0:0:0:1;IMPRECISE;CIPOS=-213,214;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=44;MATE_BND_DEPTH=37 PR 39,0 154,5
9 137177507 MantaBND:5:671:677:0:0:0:1 T [1:224938488[T . PASS SVTYPE=BND;MATEID=MantaBND:5:671:677:0:0:0:0;IMPRECISE;CIPOS=-393,393;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=44 PR 39,0 154,5
1 224939080 MantaBND:5:671:677:1:0:0:0 G G]9:137177531] . PASS SVTYPE=BND;MATEID=MantaBND:5:671:677:1:0:0:1;IMPRECISE;CIPOS=-269,269;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=43;MATE_BND_DEPTH=37 PR 43,0 173,3
9 137177531 MantaBND:5:671:677:1:0:0:1 G G]1:224939080] . PASS SVTYPE=BND;MATEID=MantaBND:5:671:677:1:0:0:0;IMPRECISE;CIPOS=-401,401;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=43 PR 43,0 173,3
16 87244217 MantaBND:5:1018:4782:0:0:0:0 A A]2:30164875] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:1018:4782:0:0:0:1;IMPRECISE;CIPOS=-235,236;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=15;BND_DEPTH=45;MATE_BND_DEPTH=51 PR 61,1 122,10
2 30164875 MantaBND:5:1018:4782:0:0:0:1 A A]16:87244217] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:1018:4782:0:0:0:0;IMPRECISE;CIPOS=-311,312;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=15;BND_DEPTH=51;MATE_BND_DEPTH=45 PR 61,1 122,10
2 30164813 MantaBND:5:1018:4782:1:0:0:0 C [16:87243666[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:1018:4782:1:0:0:1;IMPRECISE;CIPOS=-433,434;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=75;MATE_BND_DEPTH=56 PR 50,2 119,5
16 87243666 MantaBND:5:1018:4782:1:0:0:1 A [2:30164813[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:1018:4782:1:0:0:0;IMPRECISE;CIPOS=-249,249;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=56;MATE_BND_DEPTH=75 PR 50,2 119,5
1 29720868 MantaDUP:TANDEM:5:1134:1135:1:0:0 T <DUP:TANDEM> . MinSomaticScore END=30878810;SVTYPE=DUP;SVLEN=1157942;IMPRECISE;CIPOS=-387,388;CIEND=-264,264;SOMATIC;SOMATICSCORE=11 PR 39,1 78,11
2 15693666 MantaBND:5:1289:1290:0:0:0:0 G ]1:37911758]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:1289:1290:0:0:0:1;IMPRECISE;CIPOS=-255,255;SOMATIC;SOMATICSCORE=16;BND_DEPTH=39;MATE_BND_DEPTH=40 PR 41,1 88,7
1 37911758 MantaBND:5:1289:1290:0:0:0:1 T T[2:15693666[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:1289:1290:0:0:0:0;IMPRECISE;CIPOS=-406,406;SOMATIC;SOMATICSCORE=16;BND_DEPTH=40;MATE_BND_DEPTH=39 PR 41,1 88,7
1 166999007 MantaBND:5:2703:2704:0:0:0:0 T T[14:49067882[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:2703:2704:0:0:0:1;CIPOS=0,27;HOMLEN=27;HOMSEQ=ACCCGGCAGCCACCCCGTCTGGGAGGT;SOMATIC;SOMATICSCORE=12;BND_DEPTH=24;MATE_BND_DEPTH=37 PR:SR 55,0:27,0 133,0:59,22
14 49067882 MantaBND:5:2703:2704:0:0:0:1 A ]1:166999007]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:2703:2704:0:0:0:0;CIPOS=0,27;HOMLEN=27;HOMSEQ=CCCGGCAGCCACCCCGTCTGGGAGGTG;SOMATIC;SOMATICSCORE=12;BND_DEPTH=37;MATE_BND_DEPTH=24 PR:SR 55,0:27,0 133,0:59,22
18 75998560 MantaBND:5:5633:15068:0:0:0:0 T T]3:13241798] . MaxDepth;MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:5633:15068:0:0:0:1;IMPRECISE;CIPOS=-373,374;SOMATIC;SOMATICSCORE=13;BND_DEPTH=151;MATE_BND_DEPTH=45 PR 38,0 95,6
3 13241798 MantaBND:5:5633:15068:0:0:0:1 C C]18:75998560] . MaxDepth;MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:5633:15068:0:0:0:0;IMPRECISE;CIPOS=-296,297;SOMATIC;SOMATICSCORE=13;BND_DEPTH=45;MATE_BND_DEPTH=151 PR 38,0 95,6
11 26418539 MantaBND:5:5650:31462:0:0:0:0 A [8:129465231[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:5650:31462:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=G;SOMATIC;SOMATICSCORE=21;BND_DEPTH=49;MATE_BND_DEPTH=66 PR:SR 28,0:19,2 21,1:1,28
8 129465230 MantaBND:5:5650:31462:0:0:0:1 T [11:26418540[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:5650:31462:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=21;BND_DEPTH=66;MATE_BND_DEPTH=49 PR:SR 28,0:19,2 21,1:1,28
10 5412030 MantaDEL:5:6567:6567:0:1:0 GTGTGTATATGCGTGTGTATATGCGTGTGTATATGCGTGTGTATATGTGTGTGTATGTGTGTGTATGTGTGTGTATGCGTGTGTATATGTGTGTGTATATGTGTGTGTATATGCGTGTGTATATGCGTGTGTATATGCGTGTGTATGTGTGTGTATGTGCGTGTGTGTATGCGTGTGTGTATGCGTGTGTATATGCGTGTGTATATGCGTGTGTATATGCGTGTGTGTATGCGTGTGTATATGCGTGTATGTGTGTGTATATGCGTGTGTATATGCGTGTGTATATGTGTGTGTATATGCGTGTGTATATGCGTGTATATGCGTGTGTATATGTGTGTGTATATGTGTGTGTGTATATGCGTGTGTATATGCGTGTGTATGTGTGTGTGTATATGTGTGTATATGCGTGTGTATATGTGTGTATGTGTGTGTATATGCGTGTGTATATGTGTGTGTATGTGTGTGTGTATATGCGTGTATATGTGTGTATATGTGTGTGTATATGCGTGTATATGTGTGTATATGTGTGTGTGTATGCGTGTGTATATGC GCGT . MinSomaticScore END=5412579;SVTYPE=DEL;SVLEN=-549;CIGAR=1M3I549D;SOMATIC;SOMATICSCORE=18 PR:SR 15,0:10,3 13,2:0,14
19 44869700 MantaBND:5:6974:6977:0:0:0:0 T [2:133096363[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:6974:6977:0:0:0:1;IMPRECISE;CIPOS=-217,218;SOMATIC;SOMATICSCORE=18;BND_DEPTH=41;MATE_BND_DEPTH=84 PR 114,1 315,10
2 133096363 MantaBND:5:6974:6977:0:0:0:1 T [19:44869700[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:6974:6977:0:0:0:0;IMPRECISE;CIPOS=-303,304;SOMATIC;SOMATICSCORE=18;BND_DEPTH=84;MATE_BND_DEPTH=41 PR 114,1 315,10
2 130969163 MantaBND:5:7043:7044:0:0:0:0 C [2:132220483[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:7043:7044:0:0:0:1;IMPRECISE;CIPOS=-250,250;SOMATIC;SOMATICSCORE=12;BND_DEPTH=67;MATE_BND_DEPTH=39 PR 97,1 175,7
2 132220483 MantaBND:5:7043:7044:0:0:0:1 A [2:130969163[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:7043:7044:0:0:0:0;IMPRECISE;CIPOS=-272,272;SOMATIC;SOMATICSCORE=12;BND_DEPTH=39;MATE_BND_DEPTH=67 PR 97,1 175,7
17 7059699 MantaBND:5:8306:34206:0:0:0:0 G ]9:137146364]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:8306:34206:0:0:0:1;IMPRECISE;CIPOS=-261,262;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=43;MATE_BND_DEPTH=34 PR 46,1 125,7
9 137146364 MantaBND:5:8306:34206:0:0:0:1 C C[17:7059699[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:8306:34206:0:0:0:0;IMPRECISE;CIPOS=-391,391;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=34;MATE_BND_DEPTH=43 PR 46,1 125,7
17 7060266 MantaBND:5:8306:34206:1:0:0:0 T T[9:137146095[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:8306:34206:1:0:0:1;IMPRECISE;CIPOS=-258,259;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=50;MATE_BND_DEPTH=82 PR 48,1 132,4
9 137146095 MantaBND:5:8306:34206:1:0:0:1 A ]17:7060266]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:8306:34206:1:0:0:0;IMPRECISE;CIPOS=-343,344;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=82;MATE_BND_DEPTH=50 PR 48,1 132,4
1 223911459 MantaBND:5:8325:8333:0:0:0:0 G [3:118317858[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:8325:8333:0:0:0:1;IMPRECISE;CIPOS=-375,376;SOMATIC;SOMATICSCORE=12;BND_DEPTH=30;MATE_BND_DEPTH=41 PR 55,0 184,13
3 118317858 MantaBND:5:8325:8333:0:0:0:1 G [1:223911459[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:8325:8333:0:0:0:0;IMPRECISE;CIPOS=-242,243;SOMATIC;SOMATICSCORE=12;BND_DEPTH=41;MATE_BND_DEPTH=30 PR 55,0 184,13
22 42182228 MantaBND:5:9451:9453:0:0:0:0 T T]4:120602188] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:9451:9453:0:0:0:1;IMPRECISE;CIPOS=-241,241;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=17;BND_DEPTH=43;MATE_BND_DEPTH=39 PR 68,1 201,13
4 120602188 MantaBND:5:9451:9453:0:0:0:1 T T]22:42182228] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:9451:9453:0:0:0:0;IMPRECISE;CIPOS=-381,381;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=17;BND_DEPTH=39;MATE_BND_DEPTH=43 PR 68,1 201,13
22 42181896 MantaBND:5:9451:9453:1:2:0:0 T [4:120602314[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:9451:9453:1:2:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=TT;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=62;MATE_BND_DEPTH=32 PR:SR 36,0:25,8 145,5:39,61
4 120602312 MantaBND:5:9451:9453:1:2:0:1 A [22:42181898[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:9451:9453:1:2:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=AT;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=32;MATE_BND_DEPTH=62 PR:SR 36,0:25,8 145,5:39,61
18 5308586 MantaBND:5:10284:10284:6:0:0:0 A A]18:5308742] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:10284:10284:6:0:0:1;IMPRECISE;CIPOS=-490,491;SOMATIC;SOMATICSCORE=11;BND_DEPTH=34;MATE_BND_DEPTH=34 PR 37,1 39,7
18 5308742 MantaBND:5:10284:10284:6:0:0:1 G G]18:5308586] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:10284:10284:6:0:0:0;IMPRECISE;CIPOS=-356,356;SOMATIC;SOMATICSCORE=11;BND_DEPTH=34;MATE_BND_DEPTH=34 PR 37,1 39,7
14 56184745 MantaBND:5:10617:12986:0:2:0:0 T ]3:189255451]T . PASS SVTYPE=BND;MATEID=MantaBND:5:10617:12986:0:2:0:1;CIPOS=0,10;HOMLEN=10;HOMSEQ=TTCTTTCTTT;SOMATIC;SOMATICSCORE=44;BND_DEPTH=40;MATE_BND_DEPTH=39 PR:SR 46,0:19,3 161,0:59,25
3 189255451 MantaBND:5:10617:12986:0:2:0:1 C C[14:56184745[ . PASS SVTYPE=BND;MATEID=MantaBND:5:10617:12986:0:2:0:0;CIPOS=0,10;HOMLEN=10;HOMSEQ=TTTCTTTCTT;SOMATIC;SOMATICSCORE=44;BND_DEPTH=39;MATE_BND_DEPTH=40 PR:SR 46,0:19,3 161,0:59,25
15 45642097 MantaBND:5:11346:30174:0:0:0:0 G G]8:50851196] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:11346:30174:0:0:0:1;IMPRECISE;CIPOS=-224,225;SOMATIC;SOMATICSCORE=18;BND_DEPTH=54;MATE_BND_DEPTH=35 PR 78,0 142,8
8 50851196 MantaBND:5:11346:30174:0:0:0:1 T T]15:45642097] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:11346:30174:0:0:0:0;IMPRECISE;CIPOS=-380,380;SOMATIC;SOMATICSCORE=18;BND_DEPTH=35;MATE_BND_DEPTH=54 PR 78,0 142,8
3 129717889 MantaBND:5:11782:11829:0:0:0:0 A [3:125489758[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:11782:11829:0:0:0:1;IMPRECISE;CIPOS=-324,325;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=18 PR 36,3 106,8
3 125489758 MantaBND:5:11782:11829:0:0:0:1 T [3:129717889[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:11782:11829:0:0:0:0;IMPRECISE;CIPOS=-445,446;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=18;MATE_BND_DEPTH=41 PR 36,3 106,8
3 129718457 MantaBND:5:11782:11829:1:0:0:0 A A]3:125488938] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:11782:11829:1:0:0:1;IMPRECISE;CIPOS=-275,276;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=13;BND_DEPTH=41;MATE_BND_DEPTH=74 PR 80,1 270,15
3 125488938 MantaBND:5:11782:11829:1:0:0:1 T T]3:129718457] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:11782:11829:1:0:0:0;IMPRECISE;CIPOS=-455,455;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=13;BND_DEPTH=74;MATE_BND_DEPTH=41 PR 80,1 270,15
3 149482329 MantaDUP:TANDEM:5:12079:12079:2:0:0 T <DUP:TANDEM> . MinSomaticScore END=149482401;SVTYPE=DUP;SVLEN=72;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=14 PR:SR 27,0:29,0 96,0:87,6
2 215701124 MantaINS:5:12140:12140:0:10:0 A <INS> . MinSomaticScore END=215701124;SVTYPE=INS;CIPOS=0,8;CIEND=0,8;HOMLEN=8;HOMSEQ=GGGAGAGG;LEFT_SVINSSEQ=GGGAGAGGCTAGAGAATGCTTTTCATGTCTTAAAAGGTTTCCTTTAATCTGATCTATTAAATG;RIGHT_SVINSSEQ=GGGGGGACCGTGCAGGGGGCGGGGAGGGGGGACGGGGGGGGAGGGGGGAGGGGGAGGGGGACGGGGGGGGGGGGGAGAGAGGGGGGGGAAGG;SOMATIC;SOMATICSCORE=14 PR:SR 0,0:6,1 0,0:12,11
6 26194406 MantaBND:5:12167:12167:0:0:0:0 A A]6:26194117] . PASS SVTYPE=BND;MATEID=MantaBND:5:12167:12167:0:0:0:1;SOMATIC;SOMATICSCORE=48;BND_DEPTH=46;MATE_BND_DEPTH=44 PR:SR 60,0:61,0 206,1:217,32
6 26194117 MantaBND:5:12167:12167:0:0:0:1 G G]6:26194406] . PASS SVTYPE=BND;MATEID=MantaBND:5:12167:12167:0:0:0:0;SOMATIC;SOMATICSCORE=48;BND_DEPTH=44;MATE_BND_DEPTH=46 PR:SR 60,0:61,0 206,1:217,32
6 26194039 MantaBND:5:12166:12167:0:1:0:0 C [3:26431919[C . PASS SVTYPE=BND;MATEID=MantaBND:5:12166:12167:0:1:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=AA;SOMATIC;SOMATICSCORE=71;BND_DEPTH=53;MATE_BND_DEPTH=32 PR:SR 55,0:54,0 281,34:213,32
3 26431917 MantaBND:5:12166:12167:0:1:0:1 T [6:26194041[T . PASS SVTYPE=BND;MATEID=MantaBND:5:12166:12167:0:1:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=GG;SOMATIC;SOMATICSCORE=71;BND_DEPTH=32;MATE_BND_DEPTH=53 PR:SR 55,0:54,0 281,34:213,32
6 26194507 MantaBND:5:12166:12167:1:0:0:0 T T[3:26432054[ . PASS SVTYPE=BND;MATEID=MantaBND:5:12166:12167:1:0:0:1;IMPRECISE;CIPOS=-389,390;SOMATIC;SOMATICSCORE=41;BND_DEPTH=54;MATE_BND_DEPTH=35 PR 65,0 372,17
3 26432054 MantaBND:5:12166:12167:1:0:0:1 C ]6:26194507]C . PASS SVTYPE=BND;MATEID=MantaBND:5:12166:12167:1:0:0:0;IMPRECISE;CIPOS=-501,501;SOMATIC;SOMATICSCORE=41;BND_DEPTH=35;MATE_BND_DEPTH=54 PR 65,0 372,17
7 56218926 MantaBND:5:12236:24733:0:0:0:0 T [X:42144863[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:12236:24733:0:0:0:1;IMPRECISE;CIPOS=-229,229;SOMATIC;SOMATICSCORE=11;BND_DEPTH=28;MATE_BND_DEPTH=19 PR 8,0 25,5
X 42144863 MantaBND:5:12236:24733:0:0:0:1 C [7:56218926[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:12236:24733:0:0:0:0;IMPRECISE;CIPOS=-321,322;SOMATIC;SOMATICSCORE=11;BND_DEPTH=19;MATE_BND_DEPTH=28 PR 8,0 25,5
20 60680908 MantaBND:5:13270:40710:2:0:0:0 G G]12:306525] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:13270:40710:2:0:0:1;IMPRECISE;CIPOS=-536,536;SOMATIC;SOMATICSCORE=18;BND_DEPTH=50;MATE_BND_DEPTH=44 PR 58,0 205,8
12 306525 MantaBND:5:13270:40710:2:0:0:1 C C]20:60680908] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:13270:40710:2:0:0:0;IMPRECISE;CIPOS=-260,261;SOMATIC;SOMATICSCORE=18;BND_DEPTH=44;MATE_BND_DEPTH=50 PR 58,0 205,8
9 96384770 MantaBND:5:13744:44257:0:0:0:0 T [13:19644842[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:13744:44257:0:0:0:1;IMPRECISE;CIPOS=-218,218;SOMATIC;SOMATICSCORE=22;BND_DEPTH=44;MATE_BND_DEPTH=73 PR 89,0 292,8
13 19644842 MantaBND:5:13744:44257:0:0:0:1 A [9:96384770[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:13744:44257:0:0:0:0;IMPRECISE;CIPOS=-442,442;SOMATIC;SOMATICSCORE=22;BND_DEPTH=73;MATE_BND_DEPTH=44 PR 89,0 292,8
9 96385345 MantaBND:5:13744:44253:0:0:0:0 C C]13:19644491] . PASS SVTYPE=BND;MATEID=MantaBND:5:13744:44253:0:0:0:1;IMPRECISE;CIPOS=-230,230;SOMATIC;SOMATICSCORE=32;BND_DEPTH=41;MATE_BND_DEPTH=59 PR 92,0 340,9
13 19644491 MantaBND:5:13744:44253:0:0:0:1 G G]9:96385345] . PASS SVTYPE=BND;MATEID=MantaBND:5:13744:44253:0:0:0:0;IMPRECISE;CIPOS=-419,419;SOMATIC;SOMATICSCORE=32;BND_DEPTH=59;MATE_BND_DEPTH=41 PR 92,0 340,9
12 93878747 MantaBND:5:14264:43249:0:4:0:0 C C]6:109043496] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:14264:43249:0:4:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=A;SOMATIC;SOMATICSCORE=11;BND_DEPTH=27;MATE_BND_DEPTH=28 PR:SR 34,0:15,10 86,0:45,34
6 109043495 MantaBND:5:14264:43249:0:4:0:1 A A]12:93878748] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:14264:43249:0:4:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=11;BND_DEPTH=28;MATE_BND_DEPTH=27 PR:SR 34,0:15,10 86,0:45,34
X 5708010 MantaBND:5:16050:16055:0:0:0:0 G G]2:65975674] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16050:16055:0:0:0:1;IMPRECISE;CIPOS=-286,286;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=15;MATE_BND_DEPTH=37 PR 28,0 109,2
2 65975674 MantaBND:5:16050:16055:0:0:0:1 T T]X:5708010] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16050:16055:0:0:0:0;IMPRECISE;CIPOS=-286,287;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=15 PR 28,0 109,2
X 5708334 MantaBND:5:16050:16055:1:0:0:0 G [2:65975038[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16050:16055:1:0:0:1;IMPRECISE;CIPOS=-384,385;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=14;MATE_BND_DEPTH=48 PR 49,0 141,3
2 65975038 MantaBND:5:16050:16055:1:0:0:1 T [X:5708334[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16050:16055:1:0:0:0;IMPRECISE;CIPOS=-223,224;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=48;MATE_BND_DEPTH=14 PR 49,0 141,3
1 171801580 MantaBND:5:16524:16526:0:0:0:0 C C[11:24595515[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16524:16526:0:0:0:1;IMPRECISE;CIPOS=-455,456;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=28;BND_DEPTH=43;MATE_BND_DEPTH=39 PR 65,1 216,18
11 24595515 MantaBND:5:16524:16526:0:0:0:1 G ]1:171801580]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16524:16526:0:0:0:0;IMPRECISE;CIPOS=-223,224;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=28;BND_DEPTH=39;MATE_BND_DEPTH=43 PR 65,1 216,18
1 171801895 MantaBND:5:16524:16526:1:0:0:0 A ]11:24596106]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16524:16526:1:0:0:1;IMPRECISE;CIPOS=-559,559;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=39 PR 52,2 174,4
11 24596106 MantaBND:5:16524:16526:1:0:0:1 G G[1:171801895[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:16524:16526:1:0:0:0;IMPRECISE;CIPOS=-259,260;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=39;MATE_BND_DEPTH=41 PR 52,2 174,4
11 77008785 MantaBND:5:19140:19142:0:0:0:0 C C]5:157310413] . PASS SVTYPE=BND;MATEID=MantaBND:5:19140:19142:0:0:0:1;IMPRECISE;CIPOS=-224,224;SOMATIC;SOMATICSCORE=53;BND_DEPTH=40;MATE_BND_DEPTH=59 PR 60,0 92,11
5 157310413 MantaBND:5:19140:19142:0:0:0:1 T T]11:77008785] . PASS SVTYPE=BND;MATEID=MantaBND:5:19140:19142:0:0:0:0;IMPRECISE;CIPOS=-420,421;SOMATIC;SOMATICSCORE=53;BND_DEPTH=59;MATE_BND_DEPTH=40 PR 60,0 92,11
6 2384787 MantaBND:5:19678:19693:0:0:0:0 T T[14:72654574[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:19678:19693:0:0:0:1;IMPRECISE;CIPOS=-352,353;SOMATIC;SOMATICSCORE=10;BND_DEPTH=42;MATE_BND_DEPTH=48 PR 77,1 179,8
14 72654574 MantaBND:5:19678:19693:0:0:0:1 A ]6:2384787]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:19678:19693:0:0:0:0;IMPRECISE;CIPOS=-314,315;SOMATIC;SOMATICSCORE=10;BND_DEPTH=48;MATE_BND_DEPTH=42 PR 77,1 179,8
X 1450356 MantaDEL:5:20999:65734:3:0:0 A <DEL> . PASS END=1453448;SVTYPE=DEL;SVLEN=-3092;IMPRECISE;CIPOS=-211,212;CIEND=-333,334;SOMATIC;SOMATICSCORE=37 PR 53,0 79,8
6 149031557 MantaBND:5:22983:22984:0:0:0:0 A ]10:49863082]A . PASS SVTYPE=BND;MATEID=MantaBND:5:22983:22984:0:0:0:1;IMPRECISE;CIPOS=-249,250;SOMATIC;SOMATICSCORE=37;BND_DEPTH=31;MATE_BND_DEPTH=33 PR 48,0 49,6
10 49863082 MantaBND:5:22983:22984:0:0:0:1 T T[6:149031557[ . PASS SVTYPE=BND;MATEID=MantaBND:5:22983:22984:0:0:0:0;IMPRECISE;CIPOS=-363,363;SOMATIC;SOMATICSCORE=37;BND_DEPTH=33;MATE_BND_DEPTH=31 PR 48,0 49,6
2 96545003 MantaBND:5:24646:24647:0:0:0:0 A A]2:97886247] . PASS SVTYPE=BND;MATEID=MantaBND:5:24646:24647:0:0:0:1;IMPRECISE;CIPOS=-436,437;SOMATIC;SOMATICSCORE=47;BND_DEPTH=50;MATE_BND_DEPTH=45 PR 84,0 154,10
2 97886247 MantaBND:5:24646:24647:0:0:0:1 G G]2:96545003] . PASS SVTYPE=BND;MATEID=MantaBND:5:24646:24647:0:0:0:0;IMPRECISE;CIPOS=-260,261;SOMATIC;SOMATICSCORE=47;BND_DEPTH=45;MATE_BND_DEPTH=50 PR 84,0 154,10
20 48982820 MantaBND:5:24775:24776:0:0:0:0 G [7:57443997[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:24775:24776:0:0:0:1;IMPRECISE;CIPOS=-387,388;SOMATIC;SOMATICSCORE=12;BND_DEPTH=56;MATE_BND_DEPTH=38 PR 81,1 244,12
7 57443997 MantaBND:5:24775:24776:0:0:0:1 A [20:48982820[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:24775:24776:0:0:0:0;IMPRECISE;CIPOS=-222,223;SOMATIC;SOMATICSCORE=12;BND_DEPTH=38;MATE_BND_DEPTH=56 PR 81,1 244,12
16 31744702 MantaBND:5:25541:42689:0:0:0:0 T T[12:58216793[ . MaxDepth;MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:25541:42689:0:0:0:1;IMPRECISE;CIPOS=-292,293;SOMATIC;SOMATICSCORE=17;BND_DEPTH=47;MATE_BND_DEPTH=139 PR 184,1 581,10
12 58216793 MantaBND:5:25541:42689:0:0:0:1 C ]16:31744702]C . MaxDepth;MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:25541:42689:0:0:0:0;IMPRECISE;CIPOS=-392,392;SOMATIC;SOMATICSCORE=17;BND_DEPTH=139;MATE_BND_DEPTH=47 PR 184,1 581,10
20 26130200 MantaBND:5:25602:52484:0:0:0:0 A A]16:70524962] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:25602:52484:0:0:0:1;IMPRECISE;CIPOS=-254,254;SOMATIC;SOMATICSCORE=10;BND_DEPTH=79;MATE_BND_DEPTH=37 PR 79,0 152,7
16 70524962 MantaBND:5:25602:52484:0:0:0:1 G G]20:26130200] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:25602:52484:0:0:0:0;IMPRECISE;CIPOS=-224,225;SOMATIC;SOMATICSCORE=10;BND_DEPTH=37;MATE_BND_DEPTH=79 PR 79,0 152,7
19 28305202 MantaDEL:5:26084:58925:0:0:0 A <DEL> . PASS END=28306339;SVTYPE=DEL;SVLEN=-1137;IMPRECISE;CIPOS=-235,235;CIEND=-244,244;SOMATIC;SOMATICSCORE=36 PR 68,0 181,12
7 88073463 MantaBND:5:26645:26656:0:0:0:0 T ]2:55935885]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:26645:26656:0:0:0:1;IMPRECISE;CIPOS=-325,325;SOMATIC;SOMATICSCORE=14;BND_DEPTH=41;MATE_BND_DEPTH=38 PR 47,0 135,9
2 55935885 MantaBND:5:26645:26656:0:0:0:1 A A[7:88073463[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:26645:26656:0:0:0:0;IMPRECISE;CIPOS=-256,257;SOMATIC;SOMATICSCORE=14;BND_DEPTH=38;MATE_BND_DEPTH=41 PR 47,0 135,9
1 207449839 MantaBND:5:26927:26929:0:0:0:0 T T[19:7820647[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:26927:26929:0:0:0:1;IMPRECISE;CIPOS=-298,298;SOMATIC;SOMATICSCORE=12;BND_DEPTH=38;MATE_BND_DEPTH=53 PR 82,1 249,8
19 7820647 MantaBND:5:26927:26929:0:0:0:1 T ]1:207449839]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:26927:26929:0:0:0:0;IMPRECISE;CIPOS=-298,298;SOMATIC;SOMATICSCORE=12;BND_DEPTH=53;MATE_BND_DEPTH=38 PR 82,1 249,8
7 111249355 MantaBND:5:27192:27193:0:0:0:0 T ]19:57993854]TCCTT . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27192:27193:0:0:0:1;SVINSLEN=4;SVINSSEQ=TCCT;SOMATIC;SOMATICSCORE=13;BND_DEPTH=29;MATE_BND_DEPTH=15 PR:SR 29,0:7,4 113,2:16,8
19 57993854 MantaBND:5:27192:27193:0:0:0:1 T TTCCT[7:111249355[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27192:27193:0:0:0:0;SVINSLEN=4;SVINSSEQ=TCCT;SOMATIC;SOMATICSCORE=13;BND_DEPTH=15;MATE_BND_DEPTH=29 PR:SR 29,0:7,4 113,2:16,8
7 118333975 MantaBND:5:27387:27388:0:0:0:0 T T]19:48892401] . PASS SVTYPE=BND;MATEID=MantaBND:5:27387:27388:0:0:0:1;IMPRECISE;CIPOS=-345,345;SOMATIC;SOMATICSCORE=39;BND_DEPTH=34;MATE_BND_DEPTH=35 PR 43,0 109,7
19 48892401 MantaBND:5:27387:27388:0:0:0:1 C C]7:118333975] . PASS SVTYPE=BND;MATEID=MantaBND:5:27387:27388:0:0:0:0;IMPRECISE;CIPOS=-210,211;SOMATIC;SOMATICSCORE=39;BND_DEPTH=35;MATE_BND_DEPTH=34 PR 43,0 109,7
7 131548090 MantaBND:5:27787:27792:0:3:0:0 T T]15:96714040] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27787:27792:0:3:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=TCT;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=35;BND_DEPTH=29;MATE_BND_DEPTH=30 PR:SR 41,0:4,5 205,0:49,13
15 96714037 MantaBND:5:27787:27792:0:3:0:1 G G]7:131548093] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27787:27792:0:3:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=AGA;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=35;BND_DEPTH=30;MATE_BND_DEPTH=29 PR:SR 41,0:4,5 205,0:49,13
7 131548376 MantaBND:5:27787:27792:1:0:0:0 T [15:96713732[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27787:27792:1:0:0:1;IMPRECISE;CIPOS=-409,409;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=26;MATE_BND_DEPTH=40 PR 49,1 271,1
15 96713732 MantaBND:5:27787:27792:1:0:0:1 T [7:131548376[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27787:27792:1:0:0:0;IMPRECISE;CIPOS=-249,250;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=40;MATE_BND_DEPTH=26 PR 49,1 271,1
1 90843861 MantaBND:5:27830:27832:1:0:0:0 G [7:134614300[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27830:27832:1:0:0:1;IMPRECISE;CIPOS=-248,249;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=43;MATE_BND_DEPTH=30 PR 40,1 129,4
7 134614300 MantaBND:5:27830:27832:1:0:0:1 C [1:90843861[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27830:27832:1:0:0:0;IMPRECISE;CIPOS=-386,386;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=30;MATE_BND_DEPTH=43 PR 40,1 129,4
7 134614339 MantaBND:5:27830:27832:2:0:0:0 G G]1:90844432] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27830:27832:2:0:0:1;IMPRECISE;CIPOS=-339,339;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=26;MATE_BND_DEPTH=31 PR 13,0 38,6
1 90844432 MantaBND:5:27830:27832:2:0:0:1 A A]7:134614339] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:27830:27832:2:0:0:0;IMPRECISE;CIPOS=-247,247;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=31;MATE_BND_DEPTH=26 PR 13,0 38,6
14 45514503 MantaBND:5:29290:29295:0:0:0:0 A [1:61932488[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:29290:29295:0:0:0:1;IMPRECISE;CIPOS=-256,256;SOMATIC;SOMATICSCORE=22;BND_DEPTH=32;MATE_BND_DEPTH=26 PR 40,0 124,6
1 61932488 MantaBND:5:29290:29295:0:0:0:1 A [14:45514503[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:29290:29295:0:0:0:0;IMPRECISE;CIPOS=-455,456;SOMATIC;SOMATICSCORE=22;BND_DEPTH=26;MATE_BND_DEPTH=32 PR 40,0 124,6
7 68924122 MantaBND:5:29361:29362:0:0:0:0 A [X:89480802[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:29361:29362:0:0:0:1;IMPRECISE;CIPOS=-383,384;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=14;MATE_BND_DEPTH=8 PR 5,1 15,2
X 89480802 MantaBND:5:29361:29362:0:0:0:1 A [7:68924122[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:29361:29362:0:0:0:0;IMPRECISE;CIPOS=-222,223;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=8;MATE_BND_DEPTH=14 PR 5,1 15,2
X 89481383 MantaBND:5:29361:29362:1:0:0:0 A A]7:68924083] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:29361:29362:1:0:0:1;IMPRECISE;CIPOS=-215,215;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=18;MATE_BND_DEPTH=10 PR 19,0 40,3
7 68924083 MantaBND:5:29361:29362:1:0:0:1 T T]X:89481383] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:29361:29362:1:0:0:0;IMPRECISE;CIPOS=-238,239;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=10;MATE_BND_DEPTH=18 PR 19,0 40,3
10 33386484 MantaDEL:5:33520:35568:0:0:0 T <DEL> . PASS END=36118833;SVTYPE=DEL;SVLEN=-2732349;IMPRECISE;CIPOS=-375,376;CIEND=-245,246;SOMATIC;SOMATICSCORE=46 PR 61,0 126,10
10 33386461 MantaBND:5:35567:35568:0:0:0:0 T T]1:87337054] . PASS SVTYPE=BND;MATEID=MantaBND:5:35567:35568:0:0:0:1;IMPRECISE;CIPOS=-473,474;SOMATIC;SOMATICSCORE=89;BND_DEPTH=45;MATE_BND_DEPTH=48 PR 78,0 125,31
1 87337054 MantaBND:5:35567:35568:0:0:0:1 C C]10:33386461] . PASS SVTYPE=BND;MATEID=MantaBND:5:35567:35568:0:0:0:0;IMPRECISE;CIPOS=-446,446;SOMATIC;SOMATICSCORE=89;BND_DEPTH=48;MATE_BND_DEPTH=45 PR 78,0 125,31
X 1800860 MantaBND:5:36600:36623:0:2:0:0 C [10:110489648[CC . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:36600:36623:0:2:0:1;SVINSLEN=1;SVINSSEQ=C;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=13;BND_DEPTH=54;MATE_BND_DEPTH=30 PR:SR 14,0:2,3 19,0:2,11
10 110489648 MantaBND:5:36600:36623:0:2:0:1 G [X:1800860[GG . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:36600:36623:0:2:0:0;SVINSLEN=1;SVINSSEQ=G;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=13;BND_DEPTH=30;MATE_BND_DEPTH=54 PR:SR 14,0:2,3 19,0:2,11
X 1801040 MantaBND:5:36600:36623:1:0:0:0 G G]10:110489944] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:36600:36623:1:0:0:1;IMPRECISE;CIPOS=-232,233;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=0;BND_DEPTH=32;MATE_BND_DEPTH=23 PR 12,0 16,2
10 110489944 MantaBND:5:36600:36623:1:0:0:1 G G]X:1801040] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:36600:36623:1:0:0:0;IMPRECISE;CIPOS=-235,236;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=0;BND_DEPTH=23;MATE_BND_DEPTH=32 PR 12,0 16,2
11 1642961 MantaBND:5:37482:37483:0:0:0:0 A [11:71276811[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:37482:37483:0:0:0:1;IMPRECISE;CIPOS=-291,291;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=34 PR 50,1 133,4
11 71276811 MantaBND:5:37482:37483:0:0:0:1 T [11:1642961[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:37482:37483:0:0:0:0;IMPRECISE;CIPOS=-348,348;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=34;MATE_BND_DEPTH=41 PR 50,1 133,4
11 1643563 MantaBND:5:37482:37483:1:0:0:0 T T]11:71276565] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:37482:37483:1:0:0:1;IMPRECISE;CIPOS=-217,218;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=37 PR 53,0 187,5
11 71276565 MantaBND:5:37482:37483:1:0:0:1 G G]11:1643563] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:37482:37483:1:0:0:0;IMPRECISE;CIPOS=-345,345;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=41 PR 53,0 187,5
11 22516921 MantaBND:5:37897:37898:0:0:0:0 A A[18:19709874[ . PASS SVTYPE=BND;MATEID=MantaBND:5:37897:37898:0:0:0:1;IMPRECISE;CIPOS=-385,385;SOMATIC;SOMATICSCORE=41;BND_DEPTH=23;MATE_BND_DEPTH=39 PR 54,0 172,10
18 19709874 MantaBND:5:37897:37898:0:0:0:1 T ]11:22516921]T . PASS SVTYPE=BND;MATEID=MantaBND:5:37897:37898:0:0:0:0;IMPRECISE;CIPOS=-238,238;SOMATIC;SOMATICSCORE=41;BND_DEPTH=39;MATE_BND_DEPTH=23 PR 54,0 172,10
11 59973975 MantaBND:5:39064:39065:0:0:0:0 T ]1:119964314]T . PASS SVTYPE=BND;MATEID=MantaBND:5:39064:39065:0:0:0:1;IMPRECISE;CIPOS=-355,355;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=0;BND_DEPTH=21;MATE_BND_DEPTH=37 PR 45,0 57,3
1 119964314 MantaBND:5:39064:39065:0:0:0:1 C C[11:59973975[ . PASS SVTYPE=BND;MATEID=MantaBND:5:39064:39065:0:0:0:0;IMPRECISE;CIPOS=-258,259;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=21 PR 45,0 57,3
1 119963999 MantaBND:5:39064:39065:1:0:0:0 T ]11:59973960]T . PASS SVTYPE=BND;MATEID=MantaBND:5:39064:39065:1:0:0:1;CIPOS=0,12;HOMLEN=12;HOMSEQ=GTATATATATAT;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=66;BND_DEPTH=32;MATE_BND_DEPTH=21 PR:SR 34,0:16,0 41,1:29,21
11 59973960 MantaBND:5:39064:39065:1:0:0:1 A A[1:119963999[ . PASS SVTYPE=BND;MATEID=MantaBND:5:39064:39065:1:0:0:0;CIPOS=0,12;HOMLEN=12;HOMSEQ=TGTATATATATA;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=66;BND_DEPTH=21;MATE_BND_DEPTH=32 PR:SR 34,0:16,0 41,1:29,21
12 61912242 MantaBND:5:39641:39642:0:0:0:0 T ]11:90673778]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:39641:39642:0:0:0:1;IMPRECISE;CIPOS=-229,229;SOMATIC;SOMATICSCORE=15;BND_DEPTH=38;MATE_BND_DEPTH=47 PR 54,0 161,9
11 90673778 MantaBND:5:39641:39642:0:0:0:1 G G[12:61912242[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:39641:39642:0:0:0:0;IMPRECISE;CIPOS=-282,283;SOMATIC;SOMATICSCORE=15;BND_DEPTH=47;MATE_BND_DEPTH=38 PR 54,0 161,9
11 99996513 MantaBND:5:39712:39719:0:0:0:0 T [5:38894981[T . PASS SVTYPE=BND;MATEID=MantaBND:5:39712:39719:0:0:0:1;IMPRECISE;CIPOS=-260,261;SOMATIC;SOMATICSCORE=45;BND_DEPTH=45;MATE_BND_DEPTH=42 PR 72,0 172,10
5 38894981 MantaBND:5:39712:39719:0:0:0:1 C [11:99996513[C . PASS SVTYPE=BND;MATEID=MantaBND:5:39712:39719:0:0:0:0;IMPRECISE;CIPOS=-250,251;SOMATIC;SOMATICSCORE=45;BND_DEPTH=42;MATE_BND_DEPTH=45 PR 72,0 172,10
12 42500076 MantaDEL:5:42285:42291:0:0:0 G <DEL> . MinSomaticScore END=42538022;SVTYPE=DEL;SVLEN=-37946;IMPRECISE;CIPOS=-297,297;CIEND=-255,255;SOMATIC;SOMATICSCORE=17 PR 87,1 178,10
12 42481377 MantaBND:5:42290:44244:0:0:0:0 A A[13:19298176[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:42290:44244:0:0:0:1;IMPRECISE;CIPOS=-246,247;SOMATIC;SOMATICSCORE=19;BND_DEPTH=51;MATE_BND_DEPTH=49 PR 85,1 231,11
13 19298176 MantaBND:5:42290:44244:0:0:0:1 G ]12:42481377]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:42290:44244:0:0:0:0;IMPRECISE;CIPOS=-275,276;SOMATIC;SOMATICSCORE=19;BND_DEPTH=49;MATE_BND_DEPTH=51 PR 85,1 231,11
7 26241688 MantaBND:5:43198:43225:0:0:0:0 G G]6:116774744] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:43198:43225:0:0:0:1;IMPRECISE;CIPOS=-241,242;SOMATIC;SOMATICSCORE=25;BND_DEPTH=29;MATE_BND_DEPTH=54 PR 74,0 175,8
6 116774744 MantaBND:5:43198:43225:0:0:0:1 T T]7:26241688] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:43198:43225:0:0:0:0;IMPRECISE;CIPOS=-397,398;SOMATIC;SOMATICSCORE=25;BND_DEPTH=54;MATE_BND_DEPTH=29 PR 74,0 175,8
12 129771777 MantaINS:5:44111:44111:0:2:0 A <INS> . PASS END=129771779;SVTYPE=INS;LEFT_SVINSSEQ=TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACA;RIGHT_SVINSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA;SOMATIC;SOMATICSCORE=58 PR:SR 0,0:27,0 1,0:32,41
2 227910502 MantaBND:5:46927:46928:0:0:0:0 A A]21:42009754] . PASS SVTYPE=BND;MATEID=MantaBND:5:46927:46928:0:0:0:1;IMPRECISE;CIPOS=-396,396;SOMATIC;SOMATICSCORE=42;BND_DEPTH=34;MATE_BND_DEPTH=24 PR 36,0 79,8
21 42009754 MantaBND:5:46927:46928:0:0:0:1 A A]2:227910502] . PASS SVTYPE=BND;MATEID=MantaBND:5:46927:46928:0:0:0:0;IMPRECISE;CIPOS=-234,235;SOMATIC;SOMATICSCORE=42;BND_DEPTH=24;MATE_BND_DEPTH=34 PR 36,0 79,8
1 189531261 MantaDUP:TANDEM:5:47166:47166:6:1:0 T <DUP:TANDEM> . MinSomaticScore END=189531349;SVTYPE=DUP;SVLEN=88;CIPOS=0,8;CIEND=0,8;HOMLEN=8;HOMSEQ=ATTATATA;SOMATIC;SOMATICSCORE=15 PR:SR 4,0:5,0 10,0:25,14
14 104560086 MantaDEL:5:47950:47950:2:0:0 GGGAGTGTGGGTGGGGCTTGGAGTGTGGGCGGGGCTGTGGAGTGTGGGTGGGGCTGT G . PASS END=104560142;SVTYPE=DEL;SVLEN=-56;CIGAR=1M56D;CIPOS=0,4;HOMLEN=4;HOMSEQ=GGAG;SOMATIC;SOMATICSCORE=34 PR:SR 6,0:16,0 0,0:0,31
15 23706879 MantaBND:5:48364:48365:0:0:0:0 C ]20:37274667]C . PASS SVTYPE=BND;MATEID=MantaBND:5:48364:48365:0:0:0:1;SOMATIC;SOMATICSCORE=59;BND_DEPTH=45;MATE_BND_DEPTH=41 PR:SR 64,0:58,0 265,10:215,26
20 37274667 MantaBND:5:48364:48365:0:0:0:1 A A[15:23706879[ . PASS SVTYPE=BND;MATEID=MantaBND:5:48364:48365:0:0:0:0;SOMATIC;SOMATICSCORE=59;BND_DEPTH=41;MATE_BND_DEPTH=45 PR:SR 64,0:58,0 265,10:215,26
15 23706677 MantaBND:5:48363:48364:0:0:0:0 A [15:23685459[A . PASS SVTYPE=BND;MATEID=MantaBND:5:48363:48364:0:0:0:1;IMPRECISE;CIPOS=-340,341;SOMATIC;SOMATICSCORE=51;BND_DEPTH=49;MATE_BND_DEPTH=26 PR 59,0 241,23
15 23685459 MantaBND:5:48363:48364:0:0:0:1 T [15:23706677[T . PASS SVTYPE=BND;MATEID=MantaBND:5:48363:48364:0:0:0:0;IMPRECISE;CIPOS=-394,394;SOMATIC;SOMATICSCORE=51;BND_DEPTH=26;MATE_BND_DEPTH=49 PR 59,0 241,23
15 23685607 MantaBND:5:48363:48365:0:0:0:0 C [20:37274468[C . PASS SVTYPE=BND;MATEID=MantaBND:5:48363:48365:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=70;BND_DEPTH=54;MATE_BND_DEPTH=41 PR:SR 61,0:43,0 210,20:118,27
20 37274467 MantaBND:5:48363:48365:0:0:0:1 G [15:23685608[G . PASS SVTYPE=BND;MATEID=MantaBND:5:48363:48365:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=70;BND_DEPTH=41;MATE_BND_DEPTH=54 PR:SR 61,0:43,0 210,20:118,27
15 23686045 MantaINS:5:48363:48363:1:0:1 A ATCTTCTCCTCCTGGCCCCACATCTTCTCCTCCTGGTCCCGCATCTTCTCCTGCTCCCATATCTTCTCCTCCTGCTCCTGCATCTTCTCCTGCTCTTGCATCTTCTCGTGTTCCCACAGCTTCTCCTTCTGTTCCGGCAGCCTCTGCTGCTCCCACATCTTCTCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCCACATCT . MinSomaticScore END=23686045;SVTYPE=INS;SVLEN=201;CIGAR=1M201I;CIPOS=0,3;HOMLEN=3;HOMSEQ=TCT;SOMATIC;SOMATICSCORE=28 PR:SR 6,0:18,2 5,1:81,5
15 23992700 MantaBND:5:48516:48517:0:0:0:0 G G]15:23831661] . PASS SVTYPE=BND;MATEID=MantaBND:5:48516:48517:0:0:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=TTG;SOMATIC;SOMATICSCORE=105;BND_DEPTH=36;MATE_BND_DEPTH=42 PR:SR 77,0:31,0 207,47:137,44
15 23831658 MantaBND:5:48516:48517:0:0:0:1 G G]15:23992703] . PASS SVTYPE=BND;MATEID=MantaBND:5:48516:48517:0:0:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAA;SOMATIC;SOMATICSCORE=105;BND_DEPTH=42;MATE_BND_DEPTH=36 PR:SR 77,0:31,0 207,47:137,44
7 142033623 MantaDUP:TANDEM:5:49251:49262:1:0:0 A <DUP:TANDEM> . MinSomaticScore END=142156553;SVTYPE=DUP;SVLEN=122930;IMPRECISE;CIPOS=-328,329;CIEND=-297,298;SOMATIC;SOMATICSCORE=14 PR 75,1 417,10
17 26029970 MantaDEL:5:54045:54045:1:0:1 GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC G . MinSomaticScore END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10 PR:SR 37,0:19,6 92,3:43,24
17 26029970 MantaDEL:5:54045:54045:0:0:1 GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC G . MinSomaticScore END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10 PR:SR 37,0:19,6 92,3:43,24
Y 23153841 MantaBND:5:58695:58799:0:0:0:0 A ]X:49167215]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:58695:58799:0:0:0:1;IMPRECISE;CIPOS=-301,302;SOMATIC;SOMATICSCORE=20;BND_DEPTH=27;MATE_BND_DEPTH=21 PR 45,0 61,5
X 49167215 MantaBND:5:58695:58799:0:0:0:1 T T[Y:23153841[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:58695:58799:0:0:0:0;IMPRECISE;CIPOS=-311,312;SOMATIC;SOMATICSCORE=20;BND_DEPTH=21;MATE_BND_DEPTH=27 PR 45,0 61,5
19 39522283 MantaDUP:TANDEM:5:59878:59878:8:0:0 T <DUP:TANDEM> . MinSomaticScore END=39522361;SVTYPE=DUP;SVLEN=78;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=28 PR:SR 26,0:26,1 73,0:76,8
2 108797721 MantaBND:5:64174:64175:0:0:0:0 A A[10:12736174[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:64174:64175:0:0:0:1;IMPRECISE;CIPOS=-381,381;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=51;BND_DEPTH=38;MATE_BND_DEPTH=60 PR 48,0 24,11
10 12736174 MantaBND:5:64174:64175:0:0:0:1 A ]2:108797721]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:64174:64175:0:0:0:0;IMPRECISE;CIPOS=-253,253;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=51;BND_DEPTH=60;MATE_BND_DEPTH=38 PR 48,0 24,11
2 108797679 MantaBND:5:64174:64175:1:0:0:0 A ]10:12736766]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:64174:64175:1:0:0:1;IMPRECISE;CIPOS=-355,355;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=38;MATE_BND_DEPTH=31 PR 46,2 65,6
10 12736766 MantaBND:5:64174:64175:1:0:0:1 T T[2:108797679[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:64174:64175:1:0:0:0;IMPRECISE;CIPOS=-259,259;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=31;MATE_BND_DEPTH=38 PR 46,2 65,6
21 9540563 MantaDEL:5:64228:64228:2:1:0 TCCTCGCCGCTGTCCGCCTCTCAGCCGCTGTGCCCCTCTCCGCCGCTGTCCGCCTTTCCGCCGCGCCGCCGCTGTCCGCCTCTCCGCCG T . MinSomaticScore END=9540651;SVTYPE=DEL;SVLEN=-88;CIGAR=1M88D;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=23 PR:SR 1,0:11,0 18,0:34,9
X 95868063 MantaBND:5:66812:66813:0:0:0:0 G G[5:16951555[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:66812:66813:0:0:0:1;IMPRECISE;CIPOS=-394,394;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=0;BND_DEPTH=17;MATE_BND_DEPTH=28 PR 50,1 109,2
5 16951555 MantaBND:5:66812:66813:0:0:0:1 G ]X:95868063]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:66812:66813:0:0:0:0;IMPRECISE;CIPOS=-241,241;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=0;BND_DEPTH=28;MATE_BND_DEPTH=17 PR 50,1 109,2
5 16952127 MantaBND:5:66812:66813:1:0:0:0 A A[X:95868261[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:66812:66813:1:0:0:1;IMPRECISE;CIPOS=-246,247;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=45;BND_DEPTH=36;MATE_BND_DEPTH=13 PR 48,0 108,10
X 95868261 MantaBND:5:66812:66813:1:0:0:1 G ]5:16952127]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5:66812:66813:1:0:0:0;IMPRECISE;CIPOS=-405,406;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=45;BND_DEPTH=13;MATE_BND_DEPTH=36 PR 48,0 108,10
9 87717321 MantaBND:5:67492:67494:0:0:0:0 G ]X:145539058]G . PASS SVTYPE=BND;MATEID=MantaBND:5:67492:67494:0:0:0:1;IMPRECISE;CIPOS=-223,224;SOMATIC;SOMATICSCORE=30;BND_DEPTH=41;MATE_BND_DEPTH=23 PR 38,1 123,10
X 145539058 MantaBND:5:67492:67494:0:0:0:1 G G[9:87717321[ . PASS SVTYPE=BND;MATEID=MantaBND:5:67492:67494:0:0:0:0;IMPRECISE;CIPOS=-493,494;SOMATIC;SOMATICSCORE=30;BND_DEPTH=23;MATE_BND_DEPTH=41 PR 38,1 123,10
3 59838742 MantaBND:1992:4:6:0:0:0:0 T T[11:108578536[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:1992:4:6:0:0:0:1;IMPRECISE;CIPOS=-267,267;SOMATIC;SOMATICSCORE=10;BND_DEPTH=42;MATE_BND_DEPTH=48 PR 71,1 253,8
11 108578536 MantaBND:1992:4:6:0:0:0:1 A ]3:59838742]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:1992:4:6:0:0:0:0;IMPRECISE;CIPOS=-289,290;SOMATIC;SOMATICSCORE=10;BND_DEPTH=48;MATE_BND_DEPTH=42 PR 71,1 253,8
10 77858915 MantaBND:4204:0:11:0:0:0:0 A ]1:35007318]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:4204:0:11:0:0:0:1;IMPRECISE;CIPOS=-301,302;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=47;MATE_BND_DEPTH=43 PR 59,1 135,8
1 35007318 MantaBND:4204:0:11:0:0:0:1 C C[10:77858915[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:4204:0:11:0:0:0:0;IMPRECISE;CIPOS=-346,346;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=43;MATE_BND_DEPTH=47 PR 59,1 135,8
1 35007021 MantaBND:4204:0:11:1:0:0:0 A ]10:77859562]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:4204:0:11:1:0:0:1;IMPRECISE;CIPOS=-565,566;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=47 PR 46,7 66,21
10 77859562 MantaBND:4204:0:11:1:0:0:1 T T[1:35007021[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:4204:0:11:1:0:0:0;IMPRECISE;CIPOS=-310,311;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=47;MATE_BND_DEPTH=37 PR 46,7 66,21
1 45380606 MantaDEL:5444:0:1:0:0:0 CCACTTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCCGCCCATTATTTTAAATTTTATTTTATTTTTTGGTCAGGCGTGGTGGCTCACACCTGTAATCCCAG C . PASS END=45380722;SVTYPE=DEL;SVLEN=-116;CIGAR=1M116D;CIPOS=0,5;HOMLEN=5;HOMSEQ=CACTT;SOMATIC;SOMATICSCORE=46 PR:SR 27,0:56,1 33,0:96,14
11 85983417 MantaBND:5479:1:12:0:0:0:0 C C[15:81535825[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5479:1:12:0:0:0:1;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=16;BND_DEPTH=60;MATE_BND_DEPTH=23 PR 48,1 104,8
15 81535825 MantaBND:5479:1:12:0:0:0:1 C ]11:85983417]C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:5479:1:12:0:0:0:0;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=16;BND_DEPTH=23;MATE_BND_DEPTH=60 PR 48,1 104,8
7 142103830 MantaDEL:5727:1:44:0:0:0 C <DEL> . MinSomaticScore END=142143295;SVTYPE=DEL;SVLEN=-39465;IMPRECISE;CIPOS=-297,298;CIEND=-294,295;SOMATIC;SOMATICSCORE=18 PR 82,1 397,19
7 142108622 MantaDEL:5727:10:13:0:0:0 C <DEL> . MinSomaticScore END=142128416;SVTYPE=DEL;SVLEN=-19794;IMPRECISE;CIPOS=-281,281;CIEND=-251,251;SOMATIC;SOMATICSCORE=18 PR 96,1 552,22
1 62584313 MantaBND:7127:0:1:0:0:0:0 T T]1:62585618] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:7127:0:1:0:0:0:1;CIPOS=0,9;HOMLEN=9;HOMSEQ=ATTTTTGAG;SOMATIC;SOMATICSCORE=10;BND_DEPTH=42;MATE_BND_DEPTH=41 PR:SR 70,0:53,0 161,2:121,2
1 62585609 MantaBND:7127:0:1:0:0:0:1 C C]1:62584322] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:7127:0:1:0:0:0:0;CIPOS=0,9;HOMLEN=9;HOMSEQ=CTCAAAAAT;SOMATIC;SOMATICSCORE=10;BND_DEPTH=41;MATE_BND_DEPTH=42 PR:SR 70,0:53,0 161,2:121,2
19 29223860 MantaBND:8731:1:3:0:0:0:0 A A[3:181765930[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:8731:1:3:0:0:0:1;IMPRECISE;CIPOS=-485,485;SOMATIC;SOMATICSCORE=12;BND_DEPTH=41;MATE_BND_DEPTH=43 PR 53,1 194,14
3 181765930 MantaBND:8731:1:3:0:0:0:1 T ]19:29223860]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:8731:1:3:0:0:0:0;IMPRECISE;CIPOS=-257,258;SOMATIC;SOMATICSCORE=12;BND_DEPTH=43;MATE_BND_DEPTH=41 PR 53,1 194,14
1 91561585 MantaDEL:9959:0:1:0:0:0 A <DEL> . MinSomaticScore END=93514544;SVTYPE=DEL;SVLEN=-1952959;IMPRECISE;CIPOS=-222,223;CIEND=-398,398;SOMATIC;SOMATICSCORE=17 PR 73,0 114,6
1 117144568 MantaBND:12239:0:1:0:0:0:0 T T]2:91942528] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:12239:0:1:0:0:0:1;IMPRECISE;CIPOS=-217,218;SOMATIC;SOMATICSCORE=10;BND_DEPTH=48;MATE_BND_DEPTH=76 PR 106,0 263,9
2 91942528 MantaBND:12239:0:1:0:0:0:1 T T]1:117144568] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:12239:0:1:0:0:0:0;IMPRECISE;CIPOS=-326,326;SOMATIC;SOMATICSCORE=10;BND_DEPTH=76;MATE_BND_DEPTH=48 PR 106,0 263,9
5 49820060 MantaBND:12559:0:1:0:0:0:0 T T]1:121173724] . PASS SVTYPE=BND;MATEID=MantaBND:12559:0:1:0:0:0:1;IMPRECISE;CIPOS=-218,219;SOMATIC;SOMATICSCORE=42;BND_DEPTH=47;MATE_BND_DEPTH=51 PR 70,0 147,8
1 121173724 MantaBND:12559:0:1:0:0:0:1 G G]5:49820060] . PASS SVTYPE=BND;MATEID=MantaBND:12559:0:1:0:0:0:0;IMPRECISE;CIPOS=-382,383;SOMATIC;SOMATICSCORE=42;BND_DEPTH=51;MATE_BND_DEPTH=47 PR 70,0 147,8
4 49530736 MantaDEL:13251:8:8:4:9:0 AGGCACATGCCACCACACCTGGCTAAATTTTTTTATTTTTAGTAGAGACAGGGTATCACCATG A . MaxDepth;MinSomaticScore END=49530798;SVTYPE=DEL;SVLEN=-62;CIGAR=1M62D;SOMATIC;SOMATICSCORE=27 PR:SR 22,0:125,0 80,0:441,10
22 33759249 MantaDEL:13571:6:9:0:0:0 A <DEL> . PASS END=33838398;SVTYPE=DEL;SVLEN=-79149;SVINSLEN=7;SVINSSEQ=AACTACT;SOMATIC;SOMATICSCORE=85 PR:SR 55,0:46,0 174,36:132,23
2 96517422 MantaBND:14161:3:6:2:0:0:0 A [2:89104121[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:14161:3:6:2:0:0:1;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=28;BND_DEPTH=82;MATE_BND_DEPTH=108 PR 228,0 601,18
2 89104121 MantaBND:14161:3:6:2:0:0:1 T [2:96517422[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:14161:3:6:2:0:0:0;IMPRECISE;CIPOS=-277,277;SOMATIC;SOMATICSCORE=28;BND_DEPTH=108;MATE_BND_DEPTH=82 PR 228,0 601,18
1 169324206 MantaDEL:16768:0:0:3:0:0 TATAATTATATATGTTTATATATAATATAATTATATATGTTTATATATAATATAATTATATATTATATATTATAGATATAATATATAATATACTATATATTATAGATATAATATATA TT . MinSomaticScore END=169324322;SVTYPE=DEL;SVLEN=-116;CIGAR=1M1I116D;SOMATIC;SOMATICSCORE=10 PR:SR 1,0:3,0 0,0:0,22
1 169440706 MantaDEL:16794:0:0:0:1:0 CACACACACACACACACACACACACACACACACACACACACAATTTAATTAGCTGGGTGTGGTGGTGTACACATGTAGTCCCTGCTACTCAGGAGACTGAGGTGGGAGGATCACTTGAACCTAGAAGATCAAGGCTGCAGTGATCCGTGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGACAGACTCTGTCTCAAAAAACAAACGTGTGTGTGTGTGTGTGTGTGTGTATATAT C . MinSomaticScore END=169440943;SVTYPE=DEL;SVLEN=-237;CIGAR=1M237D;CIPOS=0,10;HOMLEN=10;HOMSEQ=ACACACACAC;SOMATIC;SOMATICSCORE=12 PR:SR 36,3:14,0 105,11:20,27
1 169440706 MantaDEL:16794:0:1:0:1:0 CACACACACACACACACACACACACACACACACACACACACAATTTAATTAGCTGGGTGTGGTGGTGTACACATGTAGTCCCTGCTACTCAGGAGACTGAGGTGGGAGGATCACTTGAACCTAGAAGATCAAGGCTGCAGTGATCCGTGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGACAGACTCTGTCTCAAAAAACAAACGTGTGTGTGTGTGTGTGTGTGTGTATATAT C . MinSomaticScore END=169440943;SVTYPE=DEL;SVLEN=-237;CIGAR=1M237D;CIPOS=0,10;HOMLEN=10;HOMSEQ=ACACACACAC;SOMATIC;SOMATICSCORE=12 PR:SR 36,3:14,0 105,11:20,27
3 145608881 MantaBND:19471:3:8:0:0:0:0 T T]13:63776082] . MaxDepth SVTYPE=BND;MATEID=MantaBND:19471:3:8:0:0:0:1;IMPRECISE;CIPOS=-352,352;SOMATIC;SOMATICSCORE=42;BND_DEPTH=225;MATE_BND_DEPTH=44 PR 75,0 242,11
13 63776082 MantaBND:19471:3:8:0:0:0:1 T T]3:145608881] . MaxDepth SVTYPE=BND;MATEID=MantaBND:19471:3:8:0:0:0:0;IMPRECISE;CIPOS=-264,265;SOMATIC;SOMATICSCORE=42;BND_DEPTH=44;MATE_BND_DEPTH=225 PR 75,0 242,11
1 207981229 MantaDEL:21275:0:1:0:0:0 A <DEL> . PASS END=208014817;SVTYPE=DEL;SVLEN=-33588;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=GAGG;SOMATIC;SOMATICSCORE=53 PR:SR 51,0:46,0 112,14:92,9
1 224646602 MantaDUP:TANDEM:23183:0:1:0:1:0 G <DUP:TANDEM> . PASS END=224800120;SVTYPE=DUP;SVLEN=153518;SVINSLEN=37;SVINSSEQ=CAAAACTTACTATAGCAGTTCTGTGAGCTGCTCTAGC;SOMATIC;SOMATICSCORE=117 PR:SR 53,0:48,0 232,83:197,56
1 224782795 MantaDEL:23239:0:1:0:0:0 C <DEL> . PASS END=224786033;SVTYPE=DEL;SVLEN=-3238;SVINSLEN=19;SVINSSEQ=CTATAGTAGAACTTCTTTT;SOMATIC;SOMATICSCORE=173 PR:SR 88,0:69,0 261,106:190,65
1 232243189 MantaDEL:24183:0:0:0:0:0 ATATCTGTATATACAGATAGTACATACTAATCTGTACAGTATTAGTATGTAC A . MinSomaticScore END=232243240;SVTYPE=DEL;SVLEN=-51;CIGAR=1M51D;CIPOS=0,19;HOMLEN=19;HOMSEQ=TATCTGTATATACAGATAG;SOMATIC;SOMATICSCORE=29 PR:SR 6,0:36,0 25,0:71,12
2 171007669 MantaBND:26120:1:2:0:0:0:0 T T[8:5583694[ . PASS SVTYPE=BND;MATEID=MantaBND:26120:1:2:0:0:0:1;IMPRECISE;CIPOS=-211,211;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=38;MATE_BND_DEPTH=30 PR 58,0 183,4
8 5583694 MantaBND:26120:1:2:0:0:0:1 C ]2:171007669]C . PASS SVTYPE=BND;MATEID=MantaBND:26120:1:2:0:0:0:0;IMPRECISE;CIPOS=-278,278;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=30;MATE_BND_DEPTH=38 PR 58,0 183,4
8 5583717 MantaBND:26120:1:2:1:0:0:0 A A[2:171007117[ . PASS SVTYPE=BND;MATEID=MantaBND:26120:1:2:1:0:0:1;IMPRECISE;CIPOS=-278,278;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=35;MATE_BND_DEPTH=39 PR 51,0 164,4
2 171007117 MantaBND:26120:1:2:1:0:0:1 C ]8:5583717]C . PASS SVTYPE=BND;MATEID=MantaBND:26120:1:2:1:0:0:0;IMPRECISE;CIPOS=-221,222;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=39;MATE_BND_DEPTH=35 PR 51,0 164,4
1 248040601 MantaDEL:26513:0:0:0:0:0 GCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAGCTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAAAAAATAGAAAAATTAGCTGGGCATGGTGGCAGGAGCCTGTAATCCCAGCTATTCTGGAGGTGGAGACAGGAGAATTGCTTGAACCCTGGAGGCGGAGGTTGCAGTGAGCCAATATCTCACCACTGTACTCCAGCCCAGTGCGAGACTCCATCTCAAAAAAGAAAAAAGACCTCAAACAACACTTCTCTCTCTCTTTTAGCTGCTTGTTATGGTTCCTATACATGGAACAATTATACTGGCCTCACTGTGTTATGGTAAATATTTAAGGTCATATTTGATATTGCTGGTTTGAATTCAGCTTTTCCATTTAAATACATTATAATGATGATGATGAAATCATGATAATATTTAACTTATTTTTAAAGTATATTCTGTACCTTTCCAACAAAAAGGTTAAAAGTCATTGAAGGCTAACCTTACTGCCTTCTTTGTATCACTGTCTTCTAAATAATTATTATGTCTGGGTA G . MinSomaticScore END=248041189;SVTYPE=DEL;SVLEN=-588;CIGAR=1M588D;CIPOS=0,38;HOMLEN=38;HOMSEQ=CAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGC;SOMATIC;SOMATICSCORE=13 PR:SR 53,0:39,0 209,0:130,10
1 248815240 MantaBND:26555:0:1:1:0:0:0 A A]1:248603772] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:26555:0:1:1:0:0:1;IMPRECISE;CIPOS=-262,262;SOMATIC;SOMATICSCORE=16;BND_DEPTH=48;MATE_BND_DEPTH=57 PR 74,1 255,15
1 248603772 MantaBND:26555:0:1:1:0:0:1 T T]1:248815240] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:26555:0:1:1:0:0:0;IMPRECISE;CIPOS=-250,251;SOMATIC;SOMATICSCORE=16;BND_DEPTH=57;MATE_BND_DEPTH=48 PR 74,1 255,15
8 131248114 MantaDUP:TANDEM:27514:1:2:0:0:0 C <DUP:TANDEM> . PASS END=131274645;SVTYPE=DUP;SVLEN=26531;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=AA;SOMATIC;SOMATICSCORE=57 PR:SR 51,0:35,0 221,21:102,14
14 106784764 MantaDEL:31574:2:3:0:0:0 C <DEL> . MinSomaticScore END=106809353;SVTYPE=DEL;SVLEN=-24589;IMPRECISE;CIPOS=-383,383;CIEND=-227,227;SOMATIC;SOMATICSCORE=23 PR 117,0 492,10
2 85570653 MantaBND:36015:0:1:0:0:0:0 G G]2:85543377] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:36015:0:1:0:0:0:1;IMPRECISE;CIPOS=-335,335;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=51;MATE_BND_DEPTH=43 PR 70,2 172,12
2 85543377 MantaBND:36015:0:1:0:0:0:1 C C]2:85570653] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:36015:0:1:0:0:0:0;IMPRECISE;CIPOS=-418,418;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=43;MATE_BND_DEPTH=51 PR 70,2 172,12
2 85543786 MantaBND:36015:0:1:1:0:0:0 C [2:85570138[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:36015:0:1:1:0:0:1;IMPRECISE;CIPOS=-458,459;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=12;BND_DEPTH=41;MATE_BND_DEPTH=47 PR 72,1 166,9
2 85570138 MantaBND:36015:0:1:1:0:0:1 G [2:85543786[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:36015:0:1:1:0:0:0;IMPRECISE;CIPOS=-280,280;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=12;BND_DEPTH=47;MATE_BND_DEPTH=41 PR 72,1 166,9
10 38981817 MantaBND:36840:5:6:0:0:0:0 T T[Y:13540895[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:36840:5:6:0:0:0:1;IMPRECISE;CIPOS=-237,237;SOMATIC;SOMATICSCORE=13;BND_DEPTH=47;MATE_BND_DEPTH=44 PR 67,0 108,8
Y 13540895 MantaBND:36840:5:6:0:0:0:1 T ]10:38981817]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:36840:5:6:0:0:0:0;IMPRECISE;CIPOS=-399,400;SOMATIC;SOMATICSCORE=13;BND_DEPTH=44;MATE_BND_DEPTH=47 PR 67,0 108,8
7 135542750 MantaBND:37853:0:3:0:0:0:0 C C[2:104694556[ . PASS SVTYPE=BND;MATEID=MantaBND:37853:0:3:0:0:0:1;IMPRECISE;CIPOS=-262,262;SOMATIC;SOMATICSCORE=44;BND_DEPTH=39;MATE_BND_DEPTH=35 PR 65,0 236,14
2 104694556 MantaBND:37853:0:3:0:0:0:1 A ]7:135542750]A . PASS SVTYPE=BND;MATEID=MantaBND:37853:0:3:0:0:0:0;IMPRECISE;CIPOS=-520,520;SOMATIC;SOMATICSCORE=44;BND_DEPTH=35;MATE_BND_DEPTH=39 PR 65,0 236,14
2 144623831 MantaDEL:42004:0:0:0:0:0 AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTAGAGAGGATGCGGAGAAATAGGAACACTTTTAC A . PASS END=144623934;SVTYPE=DEL;SVLEN=-103;CIGAR=1M103D;CIPOS=0,2;HOMLEN=2;HOMSEQ=AC;SOMATIC;SOMATICSCORE=31 PR:SR 25,0:77,0 56,0:197,8
3 125415914 MantaDUP:TANDEM:43431:2:7:0:0:0 A <DUP:TANDEM> . MinSomaticScore END=125438268;SVTYPE=DUP;SVLEN=22354;IMPRECISE;CIPOS=-238,239;CIEND=-466,466;SOMATIC;SOMATICSCORE=12 PR 71,1 231,14
20 26109782 MantaBND:43754:1:4:1:0:0:0 A A]17:21522468] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:43754:1:4:1:0:0:1;IMPRECISE;CIPOS=-473,474;SOMATIC;SOMATICSCORE=18;BND_DEPTH=64;MATE_BND_DEPTH=86 PR 146,1 419,15
17 21522468 MantaBND:43754:1:4:1:0:0:1 A A]20:26109782] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:43754:1:4:1:0:0:0;IMPRECISE;CIPOS=-360,360;SOMATIC;SOMATICSCORE=18;BND_DEPTH=86;MATE_BND_DEPTH=64 PR 146,1 419,15
10 84855736 MantaBND:52399:0:1:0:0:0:0 A A]2:241603069] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:52399:0:1:0:0:0:1;IMPRECISE;CIPOS=-339,339;SOMATIC;SOMATICSCORE=11;BND_DEPTH=37;MATE_BND_DEPTH=41 PR 60,1 121,7
2 241603069 MantaBND:52399:0:1:0:0:0:1 T T]10:84855736] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:52399:0:1:0:0:0:0;IMPRECISE;CIPOS=-226,226;SOMATIC;SOMATICSCORE=11;BND_DEPTH=41;MATE_BND_DEPTH=37 PR 60,1 121,7
3 15179277 MantaBND:54004:1:2:0:0:0:0 T T]11:3575402] . PASS SVTYPE=BND;MATEID=MantaBND:54004:1:2:0:0:0:1;IMPRECISE;CIPOS=-231,231;SOMATIC;SOMATICSCORE=44;BND_DEPTH=52;MATE_BND_DEPTH=43 PR 62,0 139,10
11 3575402 MantaBND:54004:1:2:0:0:0:1 C C]3:15179277] . PASS SVTYPE=BND;MATEID=MantaBND:54004:1:2:0:0:0:0;IMPRECISE;CIPOS=-514,514;SOMATIC;SOMATICSCORE=44;BND_DEPTH=43;MATE_BND_DEPTH=52 PR 62,0 139,10
3 24565106 MantaBND:54784:0:1:0:0:0:0 T [3:24566182[T . PASS SVTYPE=BND;MATEID=MantaBND:54784:0:1:0:0:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=245;BND_DEPTH=53;MATE_BND_DEPTH=46 PR:SR 90,0:61,0 236,193:197,101
3 24566179 MantaBND:54784:0:1:0:0:0:1 T [3:24565109[T . PASS SVTYPE=BND;MATEID=MantaBND:54784:0:1:0:0:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=GAG;SOMATIC;SOMATICSCORE=245;BND_DEPTH=46;MATE_BND_DEPTH=53 PR:SR 90,0:61,0 236,193:197,101
3 25400843 MantaBND:54940:0:0:0:0:0:0 C C]3:25400984] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:54940:0:0:0:0:0:1;IMPRECISE;CIPOS=-600,601;SOMATIC;SOMATICSCORE=23;BND_DEPTH=44;MATE_BND_DEPTH=42 PR 52,0 387,8
3 25400984 MantaBND:54940:0:0:0:0:0:1 T T]3:25400843] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:54940:0:0:0:0:0:0;IMPRECISE;CIPOS=-540,541;SOMATIC;SOMATICSCORE=23;BND_DEPTH=42;MATE_BND_DEPTH=44 PR 52,0 387,8
12 72666892 MantaBND:54940:0:1:0:0:0:0 G ]3:25400602]TGAATCCATCAG . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:1:0:0:0:1;SVINSLEN=11;SVINSSEQ=TGAATCCATCA;SOMATIC;SOMATICSCORE=78;BND_DEPTH=29;MATE_BND_DEPTH=43 PR:SR 67,0:43,0 380,41:267,44
3 25400602 MantaBND:54940:0:1:0:0:0:1 G GTGAATCCATCA[12:72666892[ . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:1:0:0:0:0;SVINSLEN=11;SVINSSEQ=TGAATCCATCA;SOMATIC;SOMATICSCORE=78;BND_DEPTH=43;MATE_BND_DEPTH=29 PR:SR 67,0:43,0 380,41:267,44
10 60477422 MantaBND:54940:1:2:0:0:0:0 G GC]12:72667074] . PASS SVTYPE=BND;MATEID=MantaBND:54940:1:2:0:0:0:1;SVINSLEN=1;SVINSSEQ=C;SOMATIC;SOMATICSCORE=98;BND_DEPTH=40;MATE_BND_DEPTH=41 PR:SR 58,0:54,0 122,4:114,53
12 72667074 MantaBND:54940:1:2:0:0:0:1 G GG]10:60477422] . PASS SVTYPE=BND;MATEID=MantaBND:54940:1:2:0:0:0:0;SVINSLEN=1;SVINSSEQ=G;SOMATIC;SOMATICSCORE=98;BND_DEPTH=41;MATE_BND_DEPTH=40 PR:SR 58,0:54,0 122,4:114,53
3 25400963 MantaBND:54940:0:1:1:0:0:0 C C]12:72667258] . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:1:1:0:0:1;IMPRECISE;CIPOS=-574,575;SOMATIC;SOMATICSCORE=39;BND_DEPTH=42;MATE_BND_DEPTH=35 PR 70,0 343,12
12 72667258 MantaBND:54940:0:1:1:0:0:1 A A]3:25400963] . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:1:1:0:0:0;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=39;BND_DEPTH=35;MATE_BND_DEPTH=42 PR 70,0 343,12
3 25400638 MantaBND:54940:0:2:0:0:0:0 T T]10:60477626] . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:2:0:0:0:1;IMPRECISE;CIPOS=-488,488;SOMATIC;SOMATICSCORE=67;BND_DEPTH=49;MATE_BND_DEPTH=40 PR 78,0 381,49
10 60477626 MantaBND:54940:0:2:0:0:0:1 A A]3:25400638] . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:2:0:0:0:0;IMPRECISE;CIPOS=-320,320;SOMATIC;SOMATICSCORE=67;BND_DEPTH=40;MATE_BND_DEPTH=49 PR 78,0 381,49
3 25401059 MantaBND:54940:0:2:1:0:0:0 G G[10:60477224[ . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:2:1:0:0:1;SOMATIC;SOMATICSCORE=79;BND_DEPTH=42;MATE_BND_DEPTH=33 PR:SR 68,0:44,0 350,41:266,48
10 60477224 MantaBND:54940:0:2:1:0:0:1 T ]3:25401059]T . PASS SVTYPE=BND;MATEID=MantaBND:54940:0:2:1:0:0:0;SOMATIC;SOMATICSCORE=79;BND_DEPTH=33;MATE_BND_DEPTH=42 PR:SR 68,0:44,0 350,41:266,48
3 26664498 MantaBND:55108:0:0:0:0:0:0 G G]3:26663922] . PASS SVTYPE=BND;MATEID=MantaBND:55108:0:0:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=139;BND_DEPTH=19;MATE_BND_DEPTH=36 PR:SR 44,0:34,0 227,140:169,96
3 26663921 MantaBND:55108:0:0:0:0:0:1 G G]3:26664499] . PASS SVTYPE=BND;MATEID=MantaBND:55108:0:0:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=G;SOMATIC;SOMATICSCORE=139;BND_DEPTH=36;MATE_BND_DEPTH=19 PR:SR 44,0:34,0 227,140:169,96
3 49889530 MantaDEL:58059:0:0:0:2:0 AGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCACGGTGGCGAGCGCCTGTAATCCCAGCTACTCGGGAGGTTGACGCAGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATCGGACCATTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTACCTCAAAAATAAATAATAACACAGGATAAAAAAGTTAATGGAATAGAGGCAATATATGAAGAGATAATGGCTGATAATTTTCCAGAACTGATTAAAGAAATTGCTCCACACGGCCAGGCGCG A . MinSomaticScore END=49889917;SVTYPE=DEL;SVLEN=-387;CIGAR=1M387D;CIPOS=0,42;HOMLEN=42;HOMSEQ=GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGC;SOMATIC;SOMATICSCORE=14 PR:SR 31,0:34,3 110,1:80,12
3 52694775 MantaDEL:58313:0:0:0:0:0 TGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACAGCACCTGACTAGGAACTGTATTTTGAGACTCTAAGAAGTAATTGTATTTTTGAGAAATTCACCCATCACTGCTTCTCTGTATTCCAGCAAAAGGCCTATGTAGATAAGTTACAGAAGAAAGGGGAATATTCTGCAATGTGCTTCTCACAATTTAGCTGTAGAAAAGAGTTGTGATCCCCTCTACTATTCTTTTTTCTCTTTTCAAACATGTCTTTTTATTTTCTGTCTTTCATTTTTTTTTGAGATGGAGTCTCATTCTGTCGCCCAGTCTGGAGTACAGTGGCGCCATCTCGGCTCACTGCACCCTCCACCTCCTGGGTTCAAGCGATTATCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATGTGCCACCTGCCTAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTTACCATGTTGGTCAGGCTGTTCTTGAACTCCTAACCTCAAGTGATCCTCCC T . MinSomaticScore END=52695287;SVTYPE=DEL;SVLEN=-512;CIGAR=1M512D;CIPOS=0,32;HOMLEN=32;HOMSEQ=GCCTTGGCCTCCCAAAGTGCTGGGATTACAGG;SOMATIC;SOMATICSCORE=13 PR:SR 75,1:46,1 196,1:154,16
3 53162251 MantaDEL:58422:0:1:0:0:0 TTGCAGTGAGCCGAGATAGTGCCACTGCACTCCAGCCTGAGCAACAGAGTGAGACTCCATCTCGAAAACAAAAAACAAAACACCATGTGTACATACTTATGTTAACCTCAAAGTTACCACTGTCTAAGAAACTTAATGTTCCAGGCCATATCCATGTCTCCTAATTGGTTTGAATAAAGGTTGCAGCTAATGAAACTGAGGTTGCTTACGCCACCCAGTATTTGCCACACACTGCAGTCCTTATTAGCAACACAGCCTTCATTTACTTCTGCAAAGAACTTTACAGCTTTTGTTTTAAGACAGGGTCTCACTCTGTTGCTCAGGCTGGAG T . MinSomaticScore END=53162580;SVTYPE=DEL;SVLEN=-329;CIGAR=1M329D;CIPOS=0,7;HOMLEN=7;HOMSEQ=TGCAGTG;SOMATIC;SOMATICSCORE=27 PR:SR 69,0:49,0 220,2:184,7
3 53283013 MantaDEL:58448:0:1:0:0:0 CACTCTGTCACCCAGGCTGGAGTGCAGTGGTACAATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGGTTACAGGTGCCTGCTACCATGCCCGACTCATTTTTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCTGGGCTGTCTCGAACTCCTGACCTCAAATGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTATCACACCTGGCCTAAAAATTTGTTTTTAAAAGAAAAAGGGCCTGGAGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCTGGCGGGAGGATCACCTGAGGTCAGGAATTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCCCTACTGAAAATGCAAAAATTAGCTGGGCAGTGGTGGCATGCACCTGTAATCCCAGCTACTTGGGAGACTGAGGCAGAAAATCGCTTGAACCTAGGATGTGGAGGTTACAGTGAGCCAAGATCGCCGCCCCACTGCACTCCAGCCTGGGTGACAGAGCGAG C . MinSomaticScore END=53283590;SVTYPE=DEL;SVLEN=-577;CIGAR=1M577D;CIPOS=0,9;HOMLEN=9;HOMSEQ=ACTCTGTCA;SOMATIC;SOMATICSCORE=29 PR:SR 52,0:40,3 200,1:127,18
3 60132754 MantaDEL:59262:0:1:0:0:0 T <DEL> . PASS END=60204542;SVTYPE=DEL;SVLEN=-71788;SOMATIC;SOMATICSCORE=78 PR:SR 58,0:50,0 182,39:160,21
3 60872123 MantaDEL:59386:0:1:0:0:0 A <DEL> . PASS END=61013212;SVTYPE=DEL;SVLEN=-141089;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GC;SOMATIC;SOMATICSCORE=100 PR:SR 69,0:70,0 220,50:175,29
3 75809695 MantaINS:61125:0:0:0:1:0 G GTGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGACCTCATACCCGTGCTAAAAGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGATCTCAAACCCA . MinSomaticScore END=75809695;SVTYPE=INS;SVLEN=124;CIGAR=1M124I;CIPOS=0,51;HOMLEN=51;HOMSEQ=TGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGA;SOMATIC;SOMATICSCORE=16 PR:SR 0,0:20,2 0,0:106,15
3 75809695 MantaINS:61127:0:0:0:0:0 G GTGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGACCTCATACCCGTGCTAAAAGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGATCTCAAACCCA . MinSomaticScore END=75809695;SVTYPE=INS;SVLEN=124;CIGAR=1M124I;CIPOS=0,51;HOMLEN=51;HOMSEQ=TGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGA;SOMATIC;SOMATICSCORE=16 PR:SR 0,0:20,2 0,0:106,15
3 75809695 MantaINS:61128:0:0:0:1:0 G GTGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGACCTCATACCCGTGCTAAAAGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGATCTCAAACCCA . MinSomaticScore END=75809695;SVTYPE=INS;SVLEN=124;CIGAR=1M124I;CIPOS=0,51;HOMLEN=51;HOMSEQ=TGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGA;SOMATIC;SOMATICSCORE=16 PR:SR 0,0:20,2 0,0:106,15
13 108539835 MantaBND:66443:1:4:0:0:0:0 T ]8:116021995]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:66443:1:4:0:0:0:1;IMPRECISE;CIPOS=-444,445;SOMATIC;SOMATICSCORE=17;BND_DEPTH=45;MATE_BND_DEPTH=42 PR 75,1 178,8
8 116021995 MantaBND:66443:1:4:0:0:0:1 T T[13:108539835[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:66443:1:4:0:0:0:0;IMPRECISE;CIPOS=-255,256;SOMATIC;SOMATICSCORE=17;BND_DEPTH=42;MATE_BND_DEPTH=45 PR 75,1 178,8
3 128604818 MantaDEL:66849:0:1:0:0:0 CCACTGCACTCCAGCCTGGGTGACAGAGTGTGACTTTGTCTAAAAAAAAAAAATAAAATATACTGTGTTCATTTGTTTAAAAATAATAAATCCATTACATGTTAACATAATATTTTTAATGAAAAATATTTTGTTTTTGTTTTTCCGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGACT C . PASS END=128605018;SVTYPE=DEL;SVLEN=-200;CIGAR=1M200D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CACTGCA;SOMATIC;SOMATICSCORE=33 PR:SR 28,0:37,0 96,0:122,12
3 186442174 MantaDEL:73479:0:1:0:0:0 T <DEL> . PASS END=186513631;SVTYPE=DEL;SVLEN=-71457;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=CT;SOMATIC;SOMATICSCORE=45 PR:SR 64,0:67,0 218,7:162,8
9 76898208 MantaBND:76739:0:1:1:0:0:0 T ]4:14776892]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:76739:0:1:1:0:0:1;IMPRECISE;CIPOS=-373,374;SOMATIC;SOMATICSCORE=28;BND_DEPTH=31;MATE_BND_DEPTH=36 PR 31,0 70,6
4 14776892 MantaBND:76739:0:1:1:0:0:1 C C[9:76898208[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:76739:0:1:1:0:0:0;IMPRECISE;CIPOS=-279,280;SOMATIC;SOMATICSCORE=28;BND_DEPTH=36;MATE_BND_DEPTH=31 PR 31,0 70,6
4 55088419 MantaDEL:80533:0:0:0:0:0 CACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTTACTGCAGCCTTGACCTCCTGGGCTTGGGTGATTCTTCCACCTCAGCCTCCCCGAGTAGTTGAGACTACAGGTGCCTGCCACCACGCCCAGCTAATGTTTTGTATTTTTAGTAGAGATGGGGTTCCACTATGTCACCCAGGCTGGTCTTGAACACCTGAACTCAAGGAATCCACCCGCCTCAGCCTCCCAGAGTGCTGGGATTACTGGCATGAGACACTGCACCTGGCCACAAAAGTCTATTTAAGAGTACAAATGAGGGAAAAATAATCTAGTTTTGCCAATTATATTATCACTAAAGCTCTTATGTTGTTGTAAAAAGTCACCAGACATATTGTATAATGTCACATCCGTCTTTCTTTCTTTCTCTCTCTCCTTCCTTCTTTTTTTTTTTTTTTCTTTCTTTCCTCCCTCCCTCCTTCCCTGCTTCCTTCCTTCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTAGAGACAGGGTCTT C . MinSomaticScore END=55088950;SVTYPE=DEL;SVLEN=-531;CIGAR=1M531D;CIPOS=0,29;HOMLEN=29;HOMSEQ=ACTCTGTCACCCAGGCTGGAGTGCAGTGG;SOMATIC;SOMATICSCORE=29 PR:SR 67,0:32,1 208,2:127,12
4 66211954 MantaDUP:TANDEM:81760:0:1:0:2:0 A <DUP:TANDEM> . PASS END=66212037;SVTYPE=DUP;SVLEN=83;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=TTGT;SOMATIC;SOMATICSCORE=34 PR:SR 50,0:59,0 127,0:131,18
4 88291815 MantaDEL:84422:0:0:0:2:0 TGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCTCCACGCCTGGCCTAGATATTATTATTATTATTATTATTATTATTATTATTATTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCTACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCC T . MinSomaticScore END=88292150;SVTYPE=DEL;SVLEN=-335;CIGAR=1M335D;CIPOS=0,40;HOMLEN=40;HOMSEQ=GCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCC;SOMATIC;SOMATICSCORE=27 PR:SR 32,0:26,2 139,4:93,19
4 187996320 MantaINS:95672:1:1:0:0:0 C CATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGG . PASS END=187996320;SVTYPE=INS;SVLEN=61;CIGAR=1M61I;CIPOS=0,62;HOMLEN=62;HOMSEQ=ATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGGA;SOMATIC;SOMATICSCORE=40 PR:SR 0,0:15,0 0,0:18,57
4 187996320 MantaINS:95672:0:0:0:0:0 C CATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGG . PASS END=187996320;SVTYPE=INS;SVLEN=61;CIGAR=1M61I;CIPOS=0,62;HOMLEN=62;HOMSEQ=ATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGGA;SOMATIC;SOMATICSCORE=40 PR:SR 0,0:15,0 0,0:18,57
4 189745334 MantaDEL:95919:0:0:0:4:0 AAGCAGACACACAGGGATGCACACACACAGGGAAGTACACACAGGGAAGCAGTCCCACAGTGAAGCACACACAGGGAGGCGAACACACAAAGGGAAGCACACAGGGATGCACACAGGGACGCACACACAGAGGGATGCACACACACAGGGAAGCGCACACAGGGAAGCACACAGGGAGGCACACACACAGGGAAGCAGACACACAGGGAAGCACGCATAGG AGT . MinSomaticScore END=189745554;SVTYPE=DEL;SVLEN=-220;CIGAR=1M2I220D;SOMATIC;SOMATICSCORE=15 PR:SR 20,3:22,0 70,5:36,8
5 682537 MantaDEL:96501:0:0:0:3:0 AGGGCCAGGGGTCTGCCCCTTGGGCCTGGAGCCTGTTACTAGGGCCTGGGGTCTGTCACTATGGCCAGGGGCCTGTCAGTCACTAGGGCCAGGACCTGTCCCTTGGGCCTGGAGCCTATTACTAGGACCTGGGGTCTGTCACTAGGGCCAGGGGTCTGCCCCTTGGGCCTGGAGCCTGTTACTAGGACCTGGGGTCTGTCACTAGC ACA . MinSomaticScore END=682742;SVTYPE=DEL;SVLEN=-205;CIGAR=1M2I205D;SOMATIC;SOMATICSCORE=21 PR:SR 31,2:48,7 45,0:66,26
5 12731000 MantaDEL:97716:0:1:0:1:0 C <DEL> . PASS END=12762945;SVTYPE=DEL;SVLEN=-31945;SVINSLEN=7;SVINSSEQ=TAAATAA;SOMATIC;SOMATICSCORE=39 PR:SR 51,0:48,0 123,3:104,4
8 23438282 MantaBND:97754:1:4:0:0:0:0 C C[12:46293207[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:97754:1:4:0:0:0:1;IMPRECISE;CIPOS=-387,387;SOMATIC;SOMATICSCORE=22;BND_DEPTH=28;MATE_BND_DEPTH=38 PR 53,0 136,8
12 46293207 MantaBND:97754:1:4:0:0:0:1 G ]8:23438282]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:97754:1:4:0:0:0:0;IMPRECISE;CIPOS=-250,250;SOMATIC;SOMATICSCORE=22;BND_DEPTH=38;MATE_BND_DEPTH=28 PR 53,0 136,8
5 28787996 MantaDEL:99228:0:1:0:0:0 T <DEL> . PASS END=28963095;SVTYPE=DEL;SVLEN=-175099;SOMATIC;SOMATICSCORE=122 PR:SR 62,0:59,0 58,25:51,15
13 49362239 MantaBND:100667:0:2:0:0:0:0 A A[5:44540765[ . PASS SVTYPE=BND;MATEID=MantaBND:100667:0:2:0:0:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=CT;SOMATIC;SOMATICSCORE=31;BND_DEPTH=38;MATE_BND_DEPTH=37 PR:SR 74,0:53,0 162,2:120,3
5 44540765 MantaBND:100667:0:2:0:0:0:1 C ]13:49362239]C . PASS SVTYPE=BND;MATEID=MantaBND:100667:0:2:0:0:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=TC;SOMATIC;SOMATICSCORE=31;BND_DEPTH=37;MATE_BND_DEPTH=38 PR:SR 74,0:53,0 162,2:120,3
7 130154755 MantaBND:103365:0:1:0:0:0:0 N N[5:79970935[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:103365:0:1:0:0:0:1;IMPRECISE;CIPOS=-279,279;SOMATIC;SOMATICSCORE=10;BND_DEPTH=0;MATE_BND_DEPTH=43 PR 41,0 73,6
5 79970935 MantaBND:103365:0:1:0:0:0:1 T ]7:130154755]T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:103365:0:1:0:0:0:0;IMPRECISE;CIPOS=-275,275;SOMATIC;SOMATICSCORE=10;BND_DEPTH=43;MATE_BND_DEPTH=0 PR 41,0 73,6
5 140089011 MantaDEL:107997:0:1:0:0:0 T <DEL> . MinSomaticScore END=140097145;SVTYPE=DEL;SVLEN=-8134;IMPRECISE;CIPOS=-183,184;CIEND=-342,343;SOMATIC;SOMATICSCORE=11 PR 92,1 108,8
5 140088512 MantaDUP:TANDEM:107997:0:2:0:0:0 G <DUP:TANDEM> . MinSomaticScore END=140096836;SVTYPE=DUP;SVLEN=8324;IMPRECISE;CIPOS=-242,242;CIEND=-383,383;SOMATIC;SOMATICSCORE=14 PR 78,0 153,11
5 172514191 MantaDEL:110734:0:1:0:1:0 CCACCTGCCTCGGCCTCCCAAAGTCCTGGGATTACAGGCATGAGTCACTGCGCCCAGCCTAATTTTTGTATTTTTAGTGCAGACGGGGTTTCACCATGTCAGCCAGACAGGTCTTGAGCTCCCGACCTCAGGTGATCTGCCCGCCTCGGCTTCCCAAAATGCTGGGATTACAGGCATGAGCCATCGCACCTGGCCTACATCTAGTAATTTTAAAAGTATGCAGCTGTTGGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGTGAAATTCCGTCTCTGCTAAAAATACAAAAATTAGCTGGGCATGGTAGTGCGCACCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCAGGGAGTCAGAGGTTGTGGTGAGCCAAGATCGCCCCATAGCATTCCAGTCTGGCAGACTGGAGTCTCAAAAAGAAAAAGGATGCTTCTGGGTATGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGTGGAT C . MinSomaticScore END=172514767;SVTYPE=DEL;SVLEN=-576;CIGAR=1M576D;CIPOS=0,9;HOMLEN=9;HOMSEQ=CACCTGCCT;SOMATIC;SOMATICSCORE=29 PR:SR 60,0:43,0 102,0:76,8
5 180375074 MantaDEL:111600:0:1:0:0:0 A <DEL> . MinSomaticScore END=180430515;SVTYPE=DEL;SVLEN=-55441;IMPRECISE;CIPOS=-484,484;CIEND=-287,288;SOMATIC;SOMATICSCORE=21 PR 42,1 51,14
6 7065788 MantaDEL:112587:0:0:0:2:0 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACGATCCTGGCTAATACGGTGAAACCCTGCCTCTGCTAAAAAATACAGAAAAAAAATTAGCTGGGCGTGGTGGCACACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGCGGAGCTTGCAGTGGGCTCAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAATAAAAATAAAAATAAAGTGAATCTCCTTGGATGAGTTTTAACATAGACTTGCCATATGCTCAATCCCGTTTTATGGCTAATGGTGGCGTTCCAGGGTGCTAGTATATCTTATTAAGAGATAGAAACGGTTTTTCGTACCATGTTAAATACGAGAACCAGAAGGCACAGATTAGGGCCAGGCACGGTTT G . PASS END=7066256;SVTYPE=DEL;SVLEN=-468;CIGAR=1M468D;CIPOS=0,41;HOMLEN=41;HOMSEQ=CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG;SOMATIC;SOMATICSCORE=31 PR:SR 47,0:26,2 122,0:71,18
6 7444252 MantaDEL:112651:0:0:0:1:0 TGCCTGTAAGCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCAGTTGAGGTCAGGAGTTGGAGACCAGCCTGACCAACATGGTGAAATCCCATCTCTACTAAATACAAAAAATTAGCCGGGTGTGGTGGACATGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATTGTGCTATTGCACTCCAGTCTGGGCAACAAGAGCGAAACACTGTCCAAAAAAAAAAAAGCCGGGCGCAGTGGCTTATG TT . PASS END=7444544;SVTYPE=DEL;SVLEN=-292;CIGAR=1M1I292D;SOMATIC;SOMATICSCORE=32 PR:SR 35,1:25,2 129,3:84,19
6 34701279 MantaBND:116731:0:0:0:0:0:0 A [6:34700831[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:116731:0:0:0:0:0:1;IMPRECISE;CIPOS=-344,345;SOMATIC;SOMATICSCORE=14;BND_DEPTH=42;MATE_BND_DEPTH=0 PR 19,0 45,5
6 34700831 MantaBND:116731:0:0:0:0:0:1 C [6:34701279[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:116731:0:0:0:0:0:0;IMPRECISE;CIPOS=-267,268;SOMATIC;SOMATICSCORE=14;BND_DEPTH=0;MATE_BND_DEPTH=42 PR 19,0 45,5
7 57171862 MantaDEL:120072:0:1:0:0:0 A <DEL> . MinSomaticScore END=62736383;SVTYPE=DEL;SVLEN=-5564521;IMPRECISE;CIPOS=-260,261;CIEND=-423,423;EVENT=MantaDEL:120072:0:1:0:0:0;SOMATIC;SOMATICSCORE=21;JUNCTION_SOMATICSCORE=0 PR 59,1 226,1
7 57171318 MantaDUP:TANDEM:120072:0:1:1:0:0 T <DUP:TANDEM> . MinSomaticScore END=62736043;SVTYPE=DUP;SVLEN=5564725;IMPRECISE;CIPOS=-224,224;CIEND=-335,336;EVENT=MantaDEL:120072:0:1:0:0:0;SOMATIC;SOMATICSCORE=21;JUNCTION_SOMATICSCORE=1 PR 46,0 236,6
6 69623222 MantaDEL:120956:0:0:0:0:0 ACTCCTCTGAGACAAAACTTCCAGAGGAACGATAAGACAGCAACATTCGTGGTTCACGAAAATCCGCTGTTCTGCAGCCACCGCTGCTGATACAGGCAGACAGGGTCTGGAGTGGACCTCTAGCAAAC AT . MinSomaticScore END=69623349;SVTYPE=DEL;SVLEN=-127;CIGAR=1M1I127D;SOMATIC;SOMATICSCORE=27 PR:SR 26,0:57,0 54,0:127,5
7 142211466 MantaDUP:TANDEM:124008:4:5:0:0:0 T <DUP:TANDEM> . MinSomaticScore END=142256195;SVTYPE=DUP;SVLEN=44729;IMPRECISE;CIPOS=-280,280;CIEND=-269,270;SOMATIC;SOMATICSCORE=15 PR 59,0 364,8
8 30899071 MantaBND:126056:0:4:0:0:0:0 C C[6:123340960[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:126056:0:4:0:0:0:1;IMPRECISE;CIPOS=-273,274;SOMATIC;SOMATICSCORE=12;BND_DEPTH=47;MATE_BND_DEPTH=38 PR 56,0 207,6
6 123340960 MantaBND:126056:0:4:0:0:0:1 G ]8:30899071]G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:126056:0:4:0:0:0:0;IMPRECISE;CIPOS=-259,260;SOMATIC;SOMATICSCORE=12;BND_DEPTH=38;MATE_BND_DEPTH=47 PR 56,0 207,6
15 23717166 MantaBND:127316:0:1:0:0:0:0 C [6:138774059[GATAATATACC . PASS SVTYPE=BND;MATEID=MantaBND:127316:0:1:0:0:0:1;SVINSLEN=10;SVINSSEQ=GATAATATAC;SOMATIC;SOMATICSCORE=60;BND_DEPTH=47;MATE_BND_DEPTH=37 PR:SR 76,0:61,0 258,10:207,23
6 138774059 MantaBND:127316:0:1:0:0:0:1 T [15:23717166[GTATATTATCT . PASS SVTYPE=BND;MATEID=MantaBND:127316:0:1:0:0:0:0;SVINSLEN=10;SVINSSEQ=GTATATTATC;SOMATIC;SOMATICSCORE=60;BND_DEPTH=37;MATE_BND_DEPTH=47 PR:SR 76,0:61,0 258,10:207,23
15 23712631 MantaDEL:127316:1:6:0:0:0 A <DEL> . PASS END=23717146;SVTYPE=DEL;SVLEN=-4515;IMPRECISE;CIPOS=-365,365;CIEND=-373,374;SOMATIC;SOMATICSCORE=45 PR 78,0 333,29
15 23712617 MantaBND:127316:6:11:0:0:0:0 G G]6:138774182] . PASS SVTYPE=BND;MATEID=MantaBND:127316:6:11:0:0:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=CA;SOMATIC;SOMATICSCORE=61;BND_DEPTH=38;MATE_BND_DEPTH=38 PR:SR 88,0:53,0 261,14:212,25
6 138774180 MantaBND:127316:6:11:0:0:0:1 T T]15:23712619] . PASS SVTYPE=BND;MATEID=MantaBND:127316:6:11:0:0:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=TG;SOMATIC;SOMATICSCORE=61;BND_DEPTH=38;MATE_BND_DEPTH=38 PR:SR 88,0:53,0 261,14:212,25
6 147133199 MantaDUP:TANDEM:128005:0:1:0:0:0 T <DUP:TANDEM> . PASS END=147140191;SVTYPE=DUP;SVLEN=6992;IMPRECISE;CIPOS=-244,245;CIEND=-509,509;SOMATIC;SOMATICSCORE=36 PR 70,0 147,10
7 6791872 MantaINS:131769:0:0:0:0:0 C CGCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGACCTT . PASS END=6791872;SVTYPE=INS;SVLEN=71;CIGAR=1M71I;CIPOS=0,67;HOMLEN=67;HOMSEQ=GCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGA;SOMATIC;SOMATICSCORE=31 PR:SR 0,0:14,0 0,0:42,20
7 6791872 MantaINS:131769:0:0:1:0:0 C CGCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGACCTT . PASS END=6791872;SVTYPE=INS;SVLEN=71;CIGAR=1M71I;CIPOS=0,67;HOMLEN=67;HOMSEQ=GCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGA;SOMATIC;SOMATICSCORE=31 PR:SR 0,0:14,0 0,0:42,20
7 11560859 MantaBND:132393:0:1:0:0:0:0 G G[14:50896883[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:132393:0:1:0:0:0:1;IMPRECISE;CIPOS=-384,385;SOMATIC;SOMATICSCORE=18;BND_DEPTH=38;MATE_BND_DEPTH=51 PR 75,1 199,15
14 50896883 MantaBND:132393:0:1:0:0:0:1 C ]7:11560859]C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:132393:0:1:0:0:0:0;IMPRECISE;CIPOS=-249,249;SOMATIC;SOMATICSCORE=18;BND_DEPTH=51;MATE_BND_DEPTH=38 PR 75,1 199,15
7 20824938 MantaDEL:133528:0:1:0:0:0 GGAGCCGCCGCCGCCGCCCCCGCCGCCGCCGCCGCTGCCCCCGGAAACTCCGGGGGCCTGGAAAACAGAGTAGTCGTTGGCGAAGGGCGAGCTGGAGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCTGCGGCGCTGCTGGAGGTGAGGGAGAAGGCGCTGGAGCCAGGC G . MinSomaticScore END=20825106;SVTYPE=DEL;SVLEN=-168;CIGAR=1M168D;CIPOS=0,10;HOMLEN=10;HOMSEQ=GAGCCGCCGC;SOMATIC;SOMATICSCORE=26 PR:SR 18,0:23,0 56,0:95,9
7 29723974 MantaBND:134596:0:1:0:0:0:0 C [7:32768938[C . PASS SVTYPE=BND;MATEID=MantaBND:134596:0:1:0:0:0:1;IMPRECISE;CIPOS=-234,235;SOMATIC;SOMATICSCORE=32;BND_DEPTH=47;MATE_BND_DEPTH=45 PR 86,0 210,7
7 32768938 MantaBND:134596:0:1:0:0:0:1 T [7:29723974[T . PASS SVTYPE=BND;MATEID=MantaBND:134596:0:1:0:0:0:0;IMPRECISE;CIPOS=-414,415;SOMATIC;SOMATICSCORE=32;BND_DEPTH=45;MATE_BND_DEPTH=47 PR 86,0 210,7
7 29672863 MantaDEL:134695:0:1:0:0:0 T <DEL> . MinSomaticScore END=29785365;SVTYPE=DEL;SVLEN=-112502;IMPRECISE;CIPOS=-249,249;CIEND=-305,306;SOMATIC;SOMATICSCORE=22 PR 77,1 268,18
7 57471576 MantaDEL:135364:0:1:0:0:0 G <DEL> . PASS END=57496108;SVTYPE=DEL;SVLEN=-24532;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GC;SOMATIC;SOMATICSCORE=212 PR:SR 70,0:58,0 123,83:104,60
21 9433273 MantaBND:137931:0:4:0:0:0:0 G G]7:57744243] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:137931:0:4:0:0:0:1;IMPRECISE;CIPOS=-595,595;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=117;MATE_BND_DEPTH=54 PR 172,3 632,7
7 57744243 MantaBND:137931:0:4:0:0:0:1 T T]21:9433273] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:137931:0:4:0:0:0:0;IMPRECISE;CIPOS=-368,369;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=54;MATE_BND_DEPTH=117 PR 172,3 632,7
7 57743758 MantaBND:137931:0:4:1:0:0:0 C [21:9433810[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:137931:0:4:1:0:0:1;IMPRECISE;CIPOS=-226,226;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=91;MATE_BND_DEPTH=99 PR 135,1 601,9
21 9433810 MantaBND:137931:0:4:1:0:0:1 A [7:57743758[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:137931:0:4:1:0:0:0;IMPRECISE;CIPOS=-368,369;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=99;MATE_BND_DEPTH=91 PR 135,1 601,9
7 72139912 MantaBND:139089:0:2:0:0:0:0 T [7:66602008[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:139089:0:2:0:0:0:1;IMPRECISE;CIPOS=-229,230;SOMATIC;SOMATICSCORE=13;BND_DEPTH=38;MATE_BND_DEPTH=32 PR 62,1 171,10
7 66602008 MantaBND:139089:0:2:0:0:0:1 C [7:72139912[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:139089:0:2:0:0:0:0;IMPRECISE;CIPOS=-314,315;SOMATIC;SOMATICSCORE=13;BND_DEPTH=32;MATE_BND_DEPTH=38 PR 62,1 171,10
7 102416821 MantaBND:140610:0:1:0:0:0:0 C [7:76724293[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:140610:0:1:0:0:0:1;IMPRECISE;CIPOS=-251,251;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=34;MATE_BND_DEPTH=41 PR 71,3 250,3
7 76724293 MantaBND:140610:0:1:0:0:0:1 A [7:102416821[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:140610:0:1:0:0:0:0;IMPRECISE;CIPOS=-227,228;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=34 PR 71,3 250,3
7 102416565 MantaBND:140610:0:1:1:0:0:0 A A]7:76724779] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:140610:0:1:1:0:0:1;IMPRECISE;CIPOS=-438,438;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=29;BND_DEPTH=28;MATE_BND_DEPTH=42 PR 72,0 257,9
7 76724779 MantaBND:140610:0:1:1:0:0:1 C C]7:102416565] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:140610:0:1:1:0:0:0;IMPRECISE;CIPOS=-307,307;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=29;BND_DEPTH=42;MATE_BND_DEPTH=28 PR 72,0 257,9
7 77981839 MantaDEL:140732:0:1:0:0:0 C <DEL> . PASS END=78082248;SVTYPE=DEL;SVLEN=-100409;SVINSLEN=1;SVINSSEQ=A;SOMATIC;SOMATICSCORE=133 PR:SR 74,0:59,0 184,52:146,41
7 78190205 MantaDEL:140799:0:1:0:1:0 G <DEL> . PASS END=78257684;SVTYPE=DEL;SVLEN=-67479;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GC;SOMATIC;SOMATICSCORE=103 PR:SR 91,0:51,0 208,38:146,26
7 85844667 MantaDUP:TANDEM:141639:0:1:0:1:0 A <DUP:TANDEM> . PASS END=85853700;SVTYPE=DUP;SVLEN=9033;SVINSLEN=3;SVINSSEQ=GTC;SOMATIC;SOMATICSCORE=79 PR:SR 69,0:42,0 303,50:183,22
13 63610692 MantaBND:143479:0:1:2:0:0:0 G G]17:21676987] . MaxDepth;MinSomaticScore SVTYPE=BND;MATEID=MantaBND:143479:0:1:2:0:0:1;IMPRECISE;CIPOS=-239,239;SOMATIC;SOMATICSCORE=10;BND_DEPTH=58;MATE_BND_DEPTH=114 PR 149,1 524,8
17 21676987 MantaBND:143479:0:1:2:0:0:1 C C]13:63610692] . MaxDepth;MinSomaticScore SVTYPE=BND;MATEID=MantaBND:143479:0:1:2:0:0:0;IMPRECISE;CIPOS=-291,291;SOMATIC;SOMATICSCORE=10;BND_DEPTH=114;MATE_BND_DEPTH=58 PR 149,1 524,8
17 21677306 MantaBND:143479:0:1:5:0:0:0 A [13:63610337[A . PASS SVTYPE=BND;MATEID=MantaBND:143479:0:1:5:0:0:1;IMPRECISE;CIPOS=-262,262;SOMATIC;SOMATICSCORE=51;BND_DEPTH=69;MATE_BND_DEPTH=98 PR 146,0 464,19
13 63610337 MantaBND:143479:0:1:5:0:0:1 C [17:21677306[C . PASS SVTYPE=BND;MATEID=MantaBND:143479:0:1:5:0:0:0;IMPRECISE;CIPOS=-446,446;SOMATIC;SOMATICSCORE=51;BND_DEPTH=98;MATE_BND_DEPTH=69 PR 146,0 464,19
7 104485066 MantaDUP:TANDEM:143857:0:1:0:0:0 T <DUP:TANDEM> . PASS END=104612300;SVTYPE=DUP;SVLEN=127234;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GG;SOMATIC;SOMATICSCORE=139 PR:SR 87,0:54,0 246,79:200,42
7 110393332 MantaDEL:144567:0:1:0:0:0 T <DEL> . PASS END=110394460;SVTYPE=DEL;SVLEN=-1128;SOMATIC;SOMATICSCORE=80 PR:SR 84,0:63,0 199,30:162,26
7 110273898 MantaDUP:TANDEM:144576:0:1:0:1:0 C <DUP:TANDEM> . PASS END=110290533;SVTYPE=DUP;SVLEN=16635;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=AGAA;SOMATIC;SOMATICSCORE=37 PR:SR 54,0:31,0 198,3:120,4
7 125746123 MantaDEL:146120:0:1:0:0:0 A <DEL> . PASS END=126166900;SVTYPE=DEL;SVLEN=-420777;SVINSLEN=1;SVINSSEQ=T;SOMATIC;SOMATICSCORE=126 PR:SR 58,0:34,0 175,78:166,50
7 126167441 MantaBND:146120:1:3:0:0:0:0 A [7:126098491[A . PASS SVTYPE=BND;MATEID=MantaBND:146120:1:3:0:0:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=TAT;SOMATIC;SOMATICSCORE=159;BND_DEPTH=37;MATE_BND_DEPTH=38 PR:SR 62,0:48,0 190,100:144,50
7 126098488 MantaBND:146120:1:3:0:0:0:1 T [7:126167444[T . PASS SVTYPE=BND;MATEID=MantaBND:146120:1:3:0:0:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=ATG;SOMATIC;SOMATICSCORE=159;BND_DEPTH=38;MATE_BND_DEPTH=37 PR:SR 62,0:48,0 190,100:144,50
7 139552845 MantaDEL:148325:0:1:0:1:0 AAGCCCCAGCTGACCCCTCTGGGCTCAAACTTTACTGAAGTGAAGACCTGGTCTGTGCAGAGGAGATAATGACAGATTTATCTGTCCTTATTTCAAGTCTTGAAGCCCTGTTGACTTAGTGGCTAATCTGATCAACTGATTTGAACCCTGGGGATAGCGTCCTGTAAGATGGCATCTGCCTTTTCACAGGGGACTCAGAGCCCTCAACCCACAGACTTGAACAAACAGGGGCTTTTCGCATCCCCCGTCTTACAGATAGGTTGGATTCTGGGCAACTGGCTGCTCTGCAAATGTAAAGTGAGAAACAGTAGGGCCTGGTAATGGTGAGCACAGACTCCAGAGCCAGACAGCCTGGGTTCGAATCTCAGCTGTGCTACTCACTAGCAGTGTGACCTTGGGCCAGTTACTTAATCTCTCTGAGCCTCAGTGTTCCCATCTGCAAAACGGAGATAATAATAACAGCATGTTCCACACAGAATTTGGGGAGGAGTAAATGAGCTCATGTGTGGGAAGCACTCAGCCGGGCTCCTGGCTCACAGGAAGCATCCTGTAACTGTTTCCTTTTATTACGCAGGATCCAGAGGCAGGGGC A . MinSomaticScore END=139553435;SVTYPE=DEL;SVLEN=-590;CIGAR=1M590D;CIPOS=0,25;HOMLEN=25;HOMSEQ=AGCCCCAGCTGACCCCTCTGGGCTC;SOMATIC;SOMATICSCORE=10 PR:SR 54,0:45,0 339,2:202,11
7 141654999 MantaDEL:148668:1:1:0:2:0 TATATGTATGTATAAATATGTGTATATGTATATATGTATATATGTGTGTATATGTGTGTGTGTATGTATGCATATACATATATATGTACGTATATGCATACATACACACATATACACACATATATACATATATACACACATATTTATACATAC T . MinSomaticScore END=141655151;SVTYPE=DEL;SVLEN=-152;CIGAR=1M152D;CIPOS=0,13;HOMLEN=13;HOMSEQ=ATATGTATGTATA;SOMATIC;SOMATICSCORE=11 PR:SR 22,0:34,0 118,0:164,6
7 141654999 MantaDEL:148668:0:1:0:2:0 TATATGTATGTATAAATATGTGTATATGTATATATGTATATATGTGTGTATATGTGTGTGTGTATGTATGCATATACATATATATGTACGTATATGCATACATACACACATATACACACATATATACATATATACACACATATTTATACATAC T . MinSomaticScore END=141655151;SVTYPE=DEL;SVLEN=-152;CIGAR=1M152D;CIPOS=0,13;HOMLEN=13;HOMSEQ=ATATGTATGTATA;SOMATIC;SOMATICSCORE=11 PR:SR 22,0:34,0 118,0:164,6
15 84810725 MantaBND:149878:0:1:0:0:0:0 G ]7:150746657]G . PASS SVTYPE=BND;MATEID=MantaBND:149878:0:1:0:0:0:1;SOMATIC;SOMATICSCORE=247;BND_DEPTH=46;MATE_BND_DEPTH=38 PR:SR 75,0:57,0 98,83:69,55
7 150746657 MantaBND:149878:0:1:0:0:0:1 C C[15:84810725[ . PASS SVTYPE=BND;MATEID=MantaBND:149878:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=247;BND_DEPTH=38;MATE_BND_DEPTH=46 PR:SR 75,0:57,0 98,83:69,55
8 5640077 MantaDEL:151768:0:0:0:1:1 GTATATATACACATGTATATATGTATATACATATACACAAGTGTATATGTATATATATATATACATGTGTATATATATA G . MinSomaticScore END=5640155;SVTYPE=DEL;SVLEN=-78;CIGAR=1M78D;CIPOS=0,8;HOMLEN=8;HOMSEQ=TATATATA;SOMATIC;SOMATICSCORE=14 PR:SR 5,0:14,0 21,0:32,10
8 6203037 MantaDEL:151936:0:0:0:0:0 TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGCTCAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTGCTAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGTGCCTGTACTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCACCACTGCACTCCAGCCTGGTAGACAGAGCAAAAAAAAAGCAAATTCTTTTCAGCCATTTAAAAACGTAAAAGCCGTTCTTAGCTCATGGGCCATACAAAAACAGAGGGTCAGCTGGGTTTAAACCTCAGGCTGTAATTTACTGACCCCTGTATTAAACAGCAGGCAAGCCAAAGTTAAAAGTTATAAAAGTTAATACAAAAGGCCGGGCGCGGTGGCTCAC T . MinSomaticScore END=6203477;SVTYPE=DEL;SVLEN=-440;CIGAR=1M440D;CIPOS=0,36;HOMLEN=36;HOMSEQ=GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG;SOMATIC;SOMATICSCORE=14 PR:SR 60,0:40,2 139,1:111,11
11 71311020 MantaBND:151998:2:6:0:0:0:0 G G]11:3615541] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:151998:2:6:0:0:0:1;IMPRECISE;CIPOS=-384,384;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=24;MATE_BND_DEPTH=36 PR 54,1 147,4
11 3615541 MantaBND:151998:2:6:0:0:0:1 G G]11:71311020] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:151998:2:6:0:0:0:0;IMPRECISE;CIPOS=-216,216;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=36;MATE_BND_DEPTH=24 PR 54,1 147,4
11 71311170 MantaBND:151998:2:6:1:0:0:0 A [11:3614981[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:151998:2:6:1:0:0:1;IMPRECISE;CIPOS=-314,315;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=16;BND_DEPTH=27;MATE_BND_DEPTH=39 PR 51,0 155,7
11 3614981 MantaBND:151998:2:6:1:0:0:1 T [11:71311170[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:151998:2:6:1:0:0:0;IMPRECISE;CIPOS=-213,213;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=16;BND_DEPTH=39;MATE_BND_DEPTH=27 PR 51,0 155,7
8 78518239 MantaDUP:TANDEM:159498:1:2:0:1:0 A <DUP:TANDEM> . PASS END=112063330;SVTYPE=DUP;SVLEN=33545091;SVINSLEN=3;SVINSSEQ=GAT;SOMATIC;SOMATICSCORE=39 PR:SR 63,0:55,0 220,5:199,5
8 112062419 MantaDEL:159498:2:5:0:1:0 A <DEL> . PASS END=112063581;SVTYPE=DEL;SVLEN=-1162;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=30 PR:SR 61,0:57,0 222,5:175,5
15 66917273 MantaBND:161423:0:1:0:3:0:0 G ]8:99164110]AAAG . PASS SVTYPE=BND;MATEID=MantaBND:161423:0:1:0:3:0:1;SVINSLEN=3;SVINSSEQ=AAA;SOMATIC;SOMATICSCORE=51;BND_DEPTH=49;MATE_BND_DEPTH=48 PR:SR 45,0:23,0 128,0:63,16
8 99164110 MantaBND:161423:0:1:0:3:0:1 A AAAA[15:66917273[ . PASS SVTYPE=BND;MATEID=MantaBND:161423:0:1:0:3:0:0;SVINSLEN=3;SVINSSEQ=AAA;SOMATIC;SOMATICSCORE=51;BND_DEPTH=48;MATE_BND_DEPTH=49 PR:SR 45,0:23,0 128,0:63,16
9 28034298 MantaDEL:168649:1:3:0:0:0 C <DEL> . PASS END=28157691;SVTYPE=DEL;SVLEN=-123393;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=170 PR:SR 69,0:56,0 65,37:49,23
9 28031863 MantaBND:168649:1:2:0:0:0:0 C [9:28034467[TTTTCGGAATTC . PASS SVTYPE=BND;MATEID=MantaBND:168649:1:2:0:0:0:1;SVINSLEN=11;SVINSSEQ=TTTTCGGAATT;SOMATIC;SOMATICSCORE=180;BND_DEPTH=49;MATE_BND_DEPTH=40 PR:SR 88,0:68,0 68,42:54,28
9 28034467 MantaBND:168649:1:2:0:0:0:1 G [9:28031863[AATTCCGAAAAG . PASS SVTYPE=BND;MATEID=MantaBND:168649:1:2:0:0:0:0;SVINSLEN=11;SVINSSEQ=AATTCCGAAAA;SOMATIC;SOMATICSCORE=180;BND_DEPTH=40;MATE_BND_DEPTH=49 PR:SR 88,0:68,0 68,42:54,28
9 28059140 MantaBND:168649:0:2:0:0:0:0 G GACTATT]9:28031835] . PASS SVTYPE=BND;MATEID=MantaBND:168649:0:2:0:0:0:1;SVINSLEN=6;SVINSSEQ=ACTATT;SOMATIC;SOMATICSCORE=208;BND_DEPTH=48;MATE_BND_DEPTH=51 PR:SR 90,0:65,0 75,47:63,31
9 28031835 MantaBND:168649:0:2:0:0:0:1 A AAATAGT]9:28059140] . PASS SVTYPE=BND;MATEID=MantaBND:168649:0:2:0:0:0:0;SVINSLEN=6;SVINSSEQ=AATAGT;SOMATIC;SOMATICSCORE=208;BND_DEPTH=51;MATE_BND_DEPTH=48 PR:SR 90,0:65,0 75,47:63,31
9 73659610 MantaDEL:171675:0:0:0:2:0 CGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGGCCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCAGCCACCACGCCCGGCTAATTTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGATCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAACCATGAACCACAGCGCCCGGCCATTTCCAGACTTAACTGTTATTGCTCTCTGTTGTATTTTGGTCAATCCAGGAGACACTCCATCGAAGAGTCTCTAGGATTTATTATCACTTTTAATACTCCTGTAGTTTTATTTTTACTATTTATTATTATTATTATTATTTTGGAGAT C . MinSomaticScore END=73660035;SVTYPE=DEL;SVLEN=-425;CIGAR=1M425D;CIPOS=0,8;HOMLEN=8;HOMSEQ=GGAGTCTC;SOMATIC;SOMATICSCORE=12 PR:SR 49,0:33,2 197,1:140,13
13 19651536 MantaBND:173942:0:1:0:0:0:0 T T]9:96374693] . PASS SVTYPE=BND;MATEID=MantaBND:173942:0:1:0:0:0:1;IMPRECISE;CIPOS=-460,460;SOMATIC;SOMATICSCORE=31;BND_DEPTH=68;MATE_BND_DEPTH=33 PR 108,0 399,10
9 96374693 MantaBND:173942:0:1:0:0:0:1 T T]13:19651536] . PASS SVTYPE=BND;MATEID=MantaBND:173942:0:1:0:0:0:0;IMPRECISE;CIPOS=-366,366;SOMATIC;SOMATICSCORE=31;BND_DEPTH=33;MATE_BND_DEPTH=68 PR 108,0 399,10
9 133448960 MantaDEL:178166:0:1:0:0:0 CCAGGCGTGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGGTCACGAGGTCAGGAGTTCGGGACCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCACACGCCTGTAGTCCTAGCTACTCAGGAGGCTGAGGCAGACGAATCGCTTGAACCCAGGAGGCGGAGGTTGTAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGAACGAGACCCCGTCTCAAAAAAAAAAAAAAAAAAAAAGGCTAAAGTTTAAAATGCTGACCAGACTCAAATGTTGTCAAGTAGGTAAAGAAACTGGAAAACTGGAATGTTCACATGTTGCTTACAAGAATGAAAAAAACTGAAAAATGGTACAAGCACTTTGTTGTTTCTGTTTGTTTTGTTTTGTTTTTTAGAGACAGGGTCTCACGATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGGGATCTTCCCTCCTTGGCCTCCCAAAGTGCTGGGATTA C . MinSomaticScore END=133449503;SVTYPE=DEL;SVLEN=-543;CIGAR=1M543D;CIPOS=0,8;HOMLEN=8;HOMSEQ=CAGGCGTG;SOMATIC;SOMATICSCORE=29 PR:SR 61,0:43,0 202,1:142,11
10 5011839 MantaBND:179795:1:2:0:0:0:0 A A]10:5040202] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:179795:1:2:0:0:0:1;IMPRECISE;CIPOS=-221,222;SOMATIC;SOMATICSCORE=15;BND_DEPTH=37;MATE_BND_DEPTH=43 PR 73,1 151,9
10 5040202 MantaBND:179795:1:2:0:0:0:1 C C]10:5011839] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:179795:1:2:0:0:0:0;IMPRECISE;CIPOS=-555,556;SOMATIC;SOMATICSCORE=15;BND_DEPTH=43;MATE_BND_DEPTH=37 PR 73,1 151,9
10 5006495 MantaBND:179833:0:1:0:0:0:0 C C]10:5045180] . PASS SVTYPE=BND;MATEID=MantaBND:179833:0:1:0:0:0:1;IMPRECISE;CIPOS=-256,257;SOMATIC;SOMATICSCORE=47;BND_DEPTH=36;MATE_BND_DEPTH=45 PR 75,0 153,11
10 5045180 MantaBND:179833:0:1:0:0:0:1 C C]10:5006495] . PASS SVTYPE=BND;MATEID=MantaBND:179833:0:1:0:0:0:0;IMPRECISE;CIPOS=-471,471;SOMATIC;SOMATICSCORE=47;BND_DEPTH=45;MATE_BND_DEPTH=36 PR 75,0 153,11
10 7059511 MantaBND:180113:0:1:0:0:0:0 T ]19:17396810]T . PASS SVTYPE=BND;MATEID=MantaBND:180113:0:1:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=143;BND_DEPTH=50;MATE_BND_DEPTH=37 PR:SR 81,0:62,0 128,39:88,39
19 17396810 MantaBND:180113:0:1:0:0:0:1 T T[10:7059511[ . PASS SVTYPE=BND;MATEID=MantaBND:180113:0:1:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=143;BND_DEPTH=37;MATE_BND_DEPTH=50 PR:SR 81,0:62,0 128,39:88,39
10 7132872 MantaBND:180113:1:2:0:0:0:0 G G[19:17397640[ . PASS SVTYPE=BND;MATEID=MantaBND:180113:1:2:0:0:0:1;CIPOS=0,4;HOMLEN=4;HOMSEQ=AGAA;SOMATIC;SOMATICSCORE=126;BND_DEPTH=51;MATE_BND_DEPTH=39 PR:SR 64,0:61,0 114,39:87,21
19 17397640 MantaBND:180113:1:2:0:0:0:1 A ]10:7132872]A . PASS SVTYPE=BND;MATEID=MantaBND:180113:1:2:0:0:0:0;CIPOS=0,4;HOMLEN=4;HOMSEQ=GAAG;SOMATIC;SOMATICSCORE=126;BND_DEPTH=39;MATE_BND_DEPTH=51 PR:SR 64,0:61,0 114,39:87,21
18 9868617 MantaBND:180193:0:1:0:0:0:0 C [10:7634373[C . PASS SVTYPE=BND;MATEID=MantaBND:180193:0:1:0:0:0:1;SOMATIC;SOMATICSCORE=94;BND_DEPTH=44;MATE_BND_DEPTH=31 PR:SR 65,0:44,0 125,34:88,12
10 7634373 MantaBND:180193:0:1:0:0:0:1 A [18:9868617[A . PASS SVTYPE=BND;MATEID=MantaBND:180193:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=94;BND_DEPTH=31;MATE_BND_DEPTH=44 PR:SR 65,0:44,0 125,34:88,12
10 43227779 MantaBND:183674:0:1:0:0:0:0 T T]10:45607320] . PASS SVTYPE=BND;MATEID=MantaBND:183674:0:1:0:0:0:1;IMPRECISE;CIPOS=-254,254;SOMATIC;SOMATICSCORE=32;BND_DEPTH=42;MATE_BND_DEPTH=44 PR 82,1 115,18
10 45607320 MantaBND:183674:0:1:0:0:0:1 G G]10:43227779] . PASS SVTYPE=BND;MATEID=MantaBND:183674:0:1:0:0:0:0;IMPRECISE;CIPOS=-500,500;SOMATIC;SOMATICSCORE=32;BND_DEPTH=44;MATE_BND_DEPTH=42 PR 82,1 115,18
10 55476344 MantaDEL:184493:0:0:0:0:0 CTCTGATTGAAATAAAATAACCCCCTTTTTTCCCTTCTGATTCTCAAGTACAATAAAAAGTGCAGAACATTTCTATAATGAGTACTATTTATTAAGCACTTACCATGCTCTTGGCTCTGACCTAAGTATTTTATACTGATTATCTAATTTAATCCTTATAAAAATATTGTGATGTAGGGAGTATATTTACCCTCTGAGGATGAAGAAAGACAATTTCCTATAAGTTTACATGAGTAATAAAGAGGAGATTTGAAACTTGGATGAAGCCTTAAATTTAAAGTCAAACTTTGACAACTATACCCAAATCATTTATACTGATAATTAGCACCTATGATCTCACATGTATCATGATAATAATATAATTTTGGTATTTAGCCAGGTGAAATAATGTATAAGTTGCCTTCATTTCTGCTGAGCTGTGGAATCTTAAATAACTTAATAAGGCACTGAAATGATGCAGCAGCTTCAAAGATGAAGATTTGGTATTTCTAAGTGCAATTTTCCCCAGAATTTATCTCTCGCTTATTCTCTTCTGGCCCACACAGTTTGTCT C . PASS END=55476895;SVTYPE=DEL;SVLEN=-551;CIGAR=1M551D;CIPOS=0,5;HOMLEN=5;HOMSEQ=TCTGA;SOMATIC;SOMATICSCORE=36 PR:SR 81,0:61,0 112,5:91,5
10 83641806 MantaDEL:186893:0:1:0:0:0 T <DEL> . PASS END=83827665;SVTYPE=DEL;SVLEN=-185859;SVINSLEN=5;SVINSSEQ=ATTAT;SOMATIC;SOMATICSCORE=55 PR:SR 58,0:67,0 109,14:105,4
10 89700299 MantaDEL:187358:0:1:0:0:0 A <DEL> . PASS END=89712340;SVTYPE=DEL;SVLEN=-12041;SVINSLEN=18;SVINSSEQ=GAGATTATACTTTGTGTA;SOMATIC;SOMATICSCORE=337 PR:SR 77,0:75,0 0,81:0,57
11 37459924 MantaBND:188445:0:1:0:1:0:0 C [11:40859860[C . PASS SVTYPE=BND;MATEID=MantaBND:188445:0:1:0:1:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=AAC;SOMATIC;SOMATICSCORE=41;BND_DEPTH=40;MATE_BND_DEPTH=47 PR:SR 88,0:61,0 214,1:175,7
11 40859857 MantaBND:188445:0:1:0:1:0:1 T [11:37459927[T . PASS SVTYPE=BND;MATEID=MantaBND:188445:0:1:0:1:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=TGG;SOMATIC;SOMATICSCORE=41;BND_DEPTH=47;MATE_BND_DEPTH=40 PR:SR 88,0:61,0 214,1:175,7
11 40859255 MantaBND:195879:0:1:0:0:0:0 G G]11:37460103] . PASS SVTYPE=BND;MATEID=MantaBND:195879:0:1:0:0:0:1;CIPOS=0,4;HOMLEN=4;HOMSEQ=CCGG;SOMATIC;SOMATICSCORE=37;BND_DEPTH=40;MATE_BND_DEPTH=39 PR:SR 80,0:38,0 208,4:116,3
11 37460099 MantaBND:195879:0:1:0:0:0:1 C C]11:40859259] . PASS SVTYPE=BND;MATEID=MantaBND:195879:0:1:0:0:0:0;CIPOS=0,4;HOMLEN=4;HOMSEQ=CCGG;SOMATIC;SOMATICSCORE=37;BND_DEPTH=39;MATE_BND_DEPTH=40 PR:SR 80,0:38,0 208,4:116,3
11 71280310 MantaBND:199348:0:1:0:0:0:0 A A]11:71290623] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:199348:0:1:0:0:0:1;IMPRECISE;CIPOS=-331,331;SOMATIC;SOMATICSCORE=23;BND_DEPTH=48;MATE_BND_DEPTH=26 PR 74,0 158,13
11 71290623 MantaBND:199348:0:1:0:0:0:1 T T]11:71280310] . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:199348:0:1:0:0:0:0;IMPRECISE;CIPOS=-469,469;SOMATIC;SOMATICSCORE=23;BND_DEPTH=26;MATE_BND_DEPTH=48 PR 74,0 158,13
11 80346302 MantaDEL:200189:0:1:0:1:0 C <DEL> . MinSomaticScore END=81091243;SVTYPE=DEL;SVLEN=-744941;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=TT;SOMATIC;SOMATICSCORE=28 PR:SR 62,0:67,0 145,2:122,2
11 80785598 MantaDEL:200227:0:1:0:0:0 T <DEL> . PASS END=81093779;SVTYPE=DEL;SVLEN=-308181;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=AGTT;SOMATIC;SOMATICSCORE=144 PR:SR 76,0:53,0 120,49:106,31
11 124115847 MantaBND:204470:0:2:0:0:0:0 C [11:124108194[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:204470:0:2:0:0:0:1;IMPRECISE;CIPOS=-233,233;SOMATIC;SOMATICSCORE=13;BND_DEPTH=47;MATE_BND_DEPTH=32 PR 74,1 152,17
11 124108194 MantaBND:204470:0:2:0:0:0:1 G [11:124115847[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:204470:0:2:0:0:0:0;IMPRECISE;CIPOS=-420,421;SOMATIC;SOMATICSCORE=13;BND_DEPTH=32;MATE_BND_DEPTH=47 PR 74,1 152,17
12 11083133 MantaBND:206884:0:2:0:0:0:0 G [12:11035316[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:206884:0:2:0:0:0:1;IMPRECISE;CIPOS=-219,220;SOMATIC;SOMATICSCORE=16;BND_DEPTH=50;MATE_BND_DEPTH=36 PR 54,1 136,11
12 11035316 MantaBND:206884:0:2:0:0:0:1 G [12:11083133[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:206884:0:2:0:0:0:0;IMPRECISE;CIPOS=-381,381;SOMATIC;SOMATICSCORE=16;BND_DEPTH=36;MATE_BND_DEPTH=50 PR 54,1 136,11
12 25957253 MantaDEL:208459:0:7:0:0:0 A <DEL> . MinSomaticScore END=104380687;SVTYPE=DEL;SVLEN=-78423434;IMPRECISE;CIPOS=-569,570;CIEND=-367,367;SOMATIC;SOMATICSCORE=15 PR 93,0 209,6
12 32330646 MantaDUP:TANDEM:209216:0:0:1:2:0 T <DUP:TANDEM> . MinSomaticScore END=32330708;SVTYPE=DUP;SVLEN=62;SVINSLEN=3;SVINSSEQ=TAA;SOMATIC;SOMATICSCORE=10 PR:SR 10,0:8,2 21,0:18,7
12 34172554 MantaDEL:209432:0:1:0:0:0 T <DEL> . MinSomaticScore END=38707613;SVTYPE=DEL;SVLEN=-4535059;IMPRECISE;CIPOS=-251,251;CIEND=-527,527;SOMATIC;SOMATICSCORE=17 PR 65,1 171,19
12 122137901 MantaDEL:218164:0:1:0:0:0 TCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGAATACAGGTGCCCGTCACCACGCCCGGCTAATTTTTTGTGTTTTTAGTAGAGACGGGGTTTCATCGTGTTAGCCAGGATGGTCTGGATCTCCTGACCTCGGGGTCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCTCGCCCTGCCCAAAACATTTATTTTTTAAAAAACACAAATACGGGAAGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATAGCGC T . MinSomaticScore END=122138225;SVTYPE=DEL;SVLEN=-324;CIGAR=1M324D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CACTGCA;SOMATIC;SOMATICSCORE=28 PR:SR 42,0:33,0 108,1:62,5
14 73014648 MantaDUP:TANDEM:235459:0:1:0:1:0 A <DUP:TANDEM> . PASS END=73014746;SVTYPE=DUP;SVLEN=98;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=32 PR:SR 38,0:45,0 68,0:98,29
14 107086657 MantaDEL:239134:0:1:2:0:0 T <DEL> . MinSomaticScore END=107098803;SVTYPE=DEL;SVLEN=-12146;IMPRECISE;CIPOS=-293,293;CIEND=-286,287;SOMATIC;SOMATICSCORE=10 PR 88,1 169,8
15 22823931 MantaDEL:239641:0:0:1:2:0 GACATTTATGAAGTCACCCCCAGCACCTCTGCTCAGGTGGGGTTATGAAGTTCCCCCCGCCCCCCAGCACCTCCGGCCGGGTGGGGTTATTATGGCCCCCCAGCATCTCTGGCCAGGTGGGATTATGATATCCCCTAGCACCTCTGGCCAGGTGAGGTTATGATGTCCCCCCAGCACCTCTGGCCAGGTGGGGTTATGAAATCCCCCGCAGCACCTCTGGCCAGGTGACATTTATGAAGTCACCCCCAGCACCTCTGGCCAGGTGGGGTTAAGAAGTTCCCCCCGCCCCCCAGCACCTCTGGCCAGGTGGGGTTATGATGGCCCCCCAGGACCTCCGGCCAGATTGGGTTATGATGGCCCCACAGCACCTCTGGCCAGGTGGGATTATGATACCCCCCAGCACCTCTGGCCAGGTGGGGTTATAATACACCCCCACAGCACCTCTAGCCAGGTGAGGTTATGATGTCCCCCCAGCACCTCTGGCCAGGTGGGGTTATGAAATCTCCCCCAGCACCTATGGCCAGCTGT GG . PASS END=22824458;SVTYPE=DEL;SVLEN=-527;CIGAR=1M1I527D;SOMATIC;SOMATICSCORE=36 PR:SR 20,0:11,4 78,3:34,15
15 24427627 MantaDEL:239844:0:1:0:0:0 C <DEL> . MinSomaticScore END=24643332;SVTYPE=DEL;SVLEN=-215705;IMPRECISE;CIPOS=-298,298;CIEND=-217,217;EVENT=MantaDEL:239844:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=19 PR 72,1 129,7
15 24427846 MantaDUP:TANDEM:239844:0:1:1:0:0 A <DUP:TANDEM> . MinSomaticScore END=24643885;SVTYPE=DUP;SVLEN=216039;IMPRECISE;CIPOS=-453,454;CIEND=-239,240;EVENT=MantaDEL:239844:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0 PR 71,3 120,2
15 28391380 MantaBND:240251:0:1:0:0:0:0 T [15:31124862[T . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:240251:0:1:0:0:0:1;IMPRECISE;CIPOS=-233,234;SOMATIC;SOMATICSCORE=24;BND_DEPTH=32;MATE_BND_DEPTH=34 PR 66,1 117,14
15 31124862 MantaBND:240251:0:1:0:0:0:1 C [15:28391380[C . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:240251:0:1:0:0:0:0;IMPRECISE;CIPOS=-336,336;SOMATIC;SOMATICSCORE=24;BND_DEPTH=34;MATE_BND_DEPTH=32 PR 66,1 117,14
15 41621291 MantaDUP:TANDEM:241413:0:1:0:0:0 A <DUP:TANDEM> . PASS END=41628506;SVTYPE=DUP;SVLEN=7215;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=ATAA;SOMATIC;SOMATICSCORE=169 PR:SR 57,0:38,0 90,60:54,48
15 64816988 MantaBND:243406:0:1:0:0:0:0 T T[22:42640513[ . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:243406:0:1:0:0:0:1;IMPRECISE;CIPOS=-269,270;SOMATIC;SOMATICSCORE=14;BND_DEPTH=45;MATE_BND_DEPTH=40 PR 79,0 189,8
22 42640513 MantaBND:243406:0:1:0:0:0:1 A ]15:64816988]A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:243406:0:1:0:0:0:0;IMPRECISE;CIPOS=-245,245;SOMATIC;SOMATICSCORE=14;BND_DEPTH=40;MATE_BND_DEPTH=45 PR 79,0 189,8
15 76491206 MantaDUP:TANDEM:244525:0:1:0:0:0 T <DUP:TANDEM> . MinSomaticScore END=76491273;SVTYPE=DUP;SVLEN=67;SOMATIC;SOMATICSCORE=14 PR:SR 36,0:36,0 39,0:32,9
15 78366194 MantaDEL:244687:0:1:1:0:0 CCCTCAGCTCGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGCCAGAGGTTGCAGTTAGCAGAGACTGTGCCACTGCACTCCAGCCTGGGCGACACAGCAAGACTCTGTTTCAAAAAAAAAAAGGGAGCAGGGTTTTAGAGTCGGGGTGTTTTTTGCTTGTTTGTTTGTTTGTTTGTTTGTTTTTAAGGTGGAGTCTCACTCTGTCGCTCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCATGCAATTCTCCTG C . PASS END=78366478;SVTYPE=DEL;SVLEN=-284;CIGAR=1M284D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CCTCAGC;SOMATIC;SOMATICSCORE=33 PR:SR 38,0:39,0 74,0:55,8
17 26029970 MantaDEL:251777:1:1:0:0:0 GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC G . MinSomaticScore END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10 PR:SR 37,0:19,6 92,3:43,24
17 26029970 MantaDEL:251777:0:1:0:0:0 GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC G . MinSomaticScore END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10 PR:SR 37,0:19,6 92,3:43,24
16 58624545 MantaDEL:252964:0:1:0:0:0 T <DEL> . PASS END=58663330;SVTYPE=DEL;SVLEN=-38785;SVINSLEN=4;SVINSSEQ=CCAG;SOMATIC;SOMATICSCORE=315 PR:SR 69,0:62,0 0,79:0,41
16 78928633 MantaDEL:254861:0:1:0:0:0 G <DEL> . PASS END=79095000;SVTYPE=DEL;SVLEN=-166367;CIPOS=0,6;CIEND=0,6;HOMLEN=6;HOMSEQ=ATTGGG;SOMATIC;SOMATICSCORE=182 PR:SR 71,0:53,0 64,48:44,25
17 21335984 MantaDEL:258893:0:1:0:0:0 G <DEL> . MinSomaticScore END=25317625;SVTYPE=DEL;SVLEN=-3981641;IMPRECISE;CIPOS=-530,530;CIEND=-483,483;EVENT=MantaDEL:258893:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=16 PR 128,0 411,7
17 21336141 MantaDUP:TANDEM:258893:0:1:1:0:0 T <DUP:TANDEM> . MinSomaticScore END=25317897;SVTYPE=DUP;SVLEN=3981756;IMPRECISE;CIPOS=-242,242;CIEND=-212,212;EVENT=MantaDEL:258893:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0 PR 124,2 381,2
17 21334643 MantaDEL:258942:0:2:0:0:0 T <DEL> . MinSomaticScore END=25315901;SVTYPE=DEL;SVLEN=-3981258;IMPRECISE;CIPOS=-251,252;CIEND=-224,225;EVENT=MantaDEL:258942:0:2:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0 PR 138,2 396,4
17 21334226 MantaDUP:TANDEM:258942:0:2:1:0:0 T <DUP:TANDEM> . MinSomaticScore END=25315917;SVTYPE=DUP;SVLEN=3981691;IMPRECISE;CIPOS=-398,399;CIEND=-221,222;EVENT=MantaDEL:258942:0:2:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=12 PR 145,1 388,6
17 21328380 MantaDUP:TANDEM:258819:0:1:2:0:0 C <DUP:TANDEM> . MaxDepth END=25309913;SVTYPE=DUP;SVLEN=3981533;IMPRECISE;CIPOS=-394,395;CIEND=-384,384;SOMATIC;SOMATICSCORE=45 PR 123,0 355,12
17 27986781 MantaDEL:259222:0:0:0:0:0 TGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCAGACATTTTATATATATTTTTTGAGACGGAGTCTCGCTCTATCGCCAAGGTGGAGTGCAGTGACGTGATCTTGGCTCACTGCAATCTCCACCTCCTGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCACCATCATACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGTTTCACCATGTTGGCCAGGATGGTCTCAATTTCCTGACCTC T . MinSomaticScore END=27987081;SVTYPE=DEL;SVLEN=-300;CIGAR=1M300D;CIPOS=0,53;HOMLEN=53;HOMSEQ=GTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC;SOMATIC;SOMATICSCORE=21 PR:SR 38,4:20,2 108,9:64,22
17 80317387 MantaDEL:265063:0:0:0:0:0 TCCCTCAGGTTCCCTCAGTTTCCCTCAGGTTCCCTCAGTTTCCCTCAAGTTTCCCTCAGTTTC TT . PASS END=80317449;SVTYPE=DEL;SVLEN=-62;CIGAR=1M1I62D;SOMATIC;SOMATICSCORE=31 PR:SR 3,0:15,0 13,0:52,14
17 80317387 MantaDEL:265070:0:0:0:0:0 TCCCTCAGGTTCCCTCAGTTTCCCTCAGGTTCCCTCAGTTTCCCTCAAGTTTCCCTCAGTTTC TT . PASS END=80317449;SVTYPE=DEL;SVLEN=-62;CIGAR=1M1I62D;SOMATIC;SOMATICSCORE=31 PR:SR 3,0:15,0 13,0:52,14
18 66379460 MantaDEL:271539:0:1:0:0:0 C <DEL> . PASS END=66382825;SVTYPE=DEL;SVLEN=-3365;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=AG;SOMATIC;SOMATICSCORE=92 PR:SR 67,0:73,0 117,29:103,13
X 1365238 MantaDEL:273050:0:0:0:0:0 TCCCAGGGACGCCTGGAGCCCCCAGGAGCTCGAAGAGGCAGGAAGGATCCTCCCCTAGAGCTTCTAAAAGGAACCAAACCAAACTGCAGTGGGTTGAATGGGGATCCCCCAAAGACATGTCCAGGTCCTAAACCTTAGAATCCGTGAATAGGACCTCATTTGGAAATAGGGTCTTTGCAGATGTGTTTAAGGGAAGGATCTCAAAATGAAATCGCCTTGCATTGGAGTTGGACTCTAAATCCAATGAGGGGTGACCCCATAAGAGACAAAGAGGAGACACAGACACAGAGGAGGCCACGTGGAGATGGTGACAGAGACTGCAGTGAGGCGGCCACAAA T . MinSomaticScore END=1365575;SVTYPE=DEL;SVLEN=-337;CIGAR=1M337D;CIPOS=0,29;HOMLEN=29;HOMSEQ=CCCAGGGACGCCTGGAGCCCCCAGGAGCT;SOMATIC;SOMATICSCORE=26 PR:SR 37,1:20,4 60,0:56,14
19 3992371 MantaDEL:273618:0:1:0:0:0 CCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCGCACCTGGCCTGTTTTCATTTTTAAACTTTTTTTCTTCTTTCAACTTATTTTAAGATCTGGGGTACATGTGCAGGATGTGCAGGTTTGTCATACAGGTAAATGTGTGCCATGATTGTTTGCTGCACAGATCAACCCATCACCTAGGTATTAAGCCCCACATCCCTTAACTATTCATCCTGATGCTCTCCCCGCCCCCCACCCCCACGTCCTAAATTTTTTTTTTTTTTTTTTTTTGAGAAGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTCCCTCAGCCTCCCGAGCAGCTGGGACGACAGGCGCCCACCACCACACCTGGCTAATTTTTTATATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCTTGATCCACCCACTTTGGT C . MinSomaticScore END=3992877;SVTYPE=DEL;SVLEN=-506;CIGAR=1M506D;CIPOS=0,25;HOMLEN=25;HOMSEQ=CTCCCAAAGTGCTGGGATTACAGGC;SOMATIC;SOMATICSCORE=14 PR:SR 60,0:42,1 137,1:96,10
19 5760587 MantaDEL:273802:0:0:0:1:0 TGCCAGGGGCTGGGGAGGGGGATGGGGAGTGAGTGTTTCATGAGGACCAAGTTTCAGTTGGGGAAGATGAGAAACTTCTGGAGATGGATGGTGGTGATGGTTGCACAACTCTGTGAATGTAGTTAATATTGATGAATGGTGCACTTAAAATGGTTAAGATGGAAAATTTGGGGCCCGGTGTGACGGCTCACGCCTATAATCACAGCAACTCAGGAGATCCATAGCAACTCAGGAGACTGAGGCAGGAGGATTGCTTGAGCTCAGGAGTTTCAGGTTGTAGTAAGTTATGGGCATGACAATGTACTCCAGCCTGGGCAATAGAGCAAGACCCTGACCCTGGGCGACAGAGCGAGACCCCCATCTCAAAAAAAAAAAAAATTTCTGAATGCTGACTGAAAGCCTTCTATCGAGTTTTCACTGCTTCTTGAGTCAGTTTTGTGAAGTTTTTTTTATTTGTTTTGTTTTTGTTTTTTTTTTTGAGACGAAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCATAATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCCATTCTCCTGCCTTAGCAGTGGCATGATCTCGGCTCACTGCAATCTCTGCCTCCTGGGTTCAAATGATTCTCTTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGCATGTGCCACCACGCCCAGCTAATTTCTGTATTTTTACTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGGTCCGTCCGCGTCAGCCTCCCAAAGTGCTAGAATTACAGGCATGAACCACCGCACCCGGCCAGTGTTCAGAAATTAATGGATGGATGGATGGATGGATGGATGGCTGGCTGGCTGCCTGGCTG TCTTAGGAAACTTACAATCATGGCGGAAGGC . PASS END=5761474;SVTYPE=DEL;SVLEN=-887;CIGAR=1M30I887D;SOMATIC;SOMATICSCORE=31 PR:SR 62,0:40,1 142,0:112,12
19 16092622 MantaBND:275380:0:1:0:0:0:0 G G]19:16094122] . PASS SVTYPE=BND;MATEID=MantaBND:275380:0:1:0:0:0:1;IMPRECISE;CIPOS=-322,322;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=36;MATE_BND_DEPTH=54 PR 80,0 206,3
19 16094122 MantaBND:275380:0:1:0:0:0:1 T T]19:16092622] . PASS SVTYPE=BND;MATEID=MantaBND:275380:0:1:0:0:0:0;IMPRECISE;CIPOS=-286,287;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=54;MATE_BND_DEPTH=36 PR 80,0 206,3
19 16092418 MantaBND:275380:0:1:1:0:0:0 A [19:16094109[A . PASS SVTYPE=BND;MATEID=MantaBND:275380:0:1:1:0:0:1;IMPRECISE;CIPOS=-300,301;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=56;MATE_BND_DEPTH=57 PR 90,0 205,4
19 16094109 MantaBND:275380:0:1:1:0:0:1 G [19:16092418[G . PASS SVTYPE=BND;MATEID=MantaBND:275380:0:1:1:0:0:0;IMPRECISE;CIPOS=-289,289;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=57;MATE_BND_DEPTH=56 PR 90,0 205,4
19 34741394 MantaDEL:277434:0:0:1:0:0 CCACTGCACTCCAGCCTGGGTGACAGAGTGAGATTCCATCTCAAAAATTGATAAACAAATAAAATAAAGAAAGATGTCTATAGTTGTCAACCTGCAGTGAATCCTCAGTACTACTGGGAAATTCTACCATGTTTCTTTTGTCCACTCACCTTTGTGCTTCCAGACCTTTCCCACTCCCCTCACTCTTTGCTGCAGTCTAAGGTAAACCTACCACCAAGCATTTTATTTATGGATTTATGTATTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCATGGCT C . MinSomaticScore END=34741693;SVTYPE=DEL;SVLEN=-299;CIGAR=1M299D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CACTGCA;SOMATIC;SOMATICSCORE=19 PR:SR 65,2:55,0 125,4:104,6
19 53801931 MantaBND:279863:0:1:0:0:0:0 C C]19:53788614] . PASS SVTYPE=BND;MATEID=MantaBND:279863:0:1:0:0:0:1;IMPRECISE;CIPOS=-439,440;SOMATIC;SOMATICSCORE=47;BND_DEPTH=42;MATE_BND_DEPTH=42 PR 75,0 214,14
19 53788614 MantaBND:279863:0:1:0:0:0:1 G G]19:53801931] . PASS SVTYPE=BND;MATEID=MantaBND:279863:0:1:0:0:0:0;IMPRECISE;CIPOS=-433,434;SOMATIC;SOMATICSCORE=47;BND_DEPTH=42;MATE_BND_DEPTH=42 PR 75,0 214,14
19 53945821 MantaDEL:279904:0:1:0:0:0 G <DEL> . MinSomaticScore END=53983161;SVTYPE=DEL;SVLEN=-37340;IMPRECISE;CIPOS=-269,269;CIEND=-256,257;SOMATIC;SOMATICSCORE=10 PR 67,1 172,7
19 56711878 MantaDUP:TANDEM:280396:0:1:0:0:0 G <DUP:TANDEM> . MinSomaticScore END=56750112;SVTYPE=DUP;SVLEN=38234;IMPRECISE;CIPOS=-239,239;CIEND=-321,322;SOMATIC;SOMATICSCORE=17 PR 80,1 181,8
20 13160727 MantaDEL:282317:0:1:0:0:0 G <DEL> . PASS END=13164099;SVTYPE=DEL;SVLEN=-3372;CIPOS=0,3;CIEND=0,3;HOMLEN=3;HOMSEQ=GTC;SOMATIC;SOMATICSCORE=166 PR:SR 68,0:62,0 130,70:117,40
20 14962955 MantaDEL:282487:0:2:0:0:0 G <DEL> . PASS END=15013947;SVTYPE=DEL;SVLEN=-50992;CIPOS=0,3;CIEND=0,3;HOMLEN=3;HOMSEQ=TGC;SOMATIC;SOMATICSCORE=107 PR:SR 68,0:69,0 140,44:144,24
20 15000622 MantaDEL:282487:0:1:0:0:0 A <DEL> . PASS END=15013841;SVTYPE=DEL;SVLEN=-13219;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=AT;SOMATIC;SOMATICSCORE=134 PR:SR 72,0:73,0 120,38:97,25
20 14988824 MantaDEL:282494:0:1:0:0:0 A <DEL> . PASS END=15108817;SVTYPE=DEL;SVLEN=-119993;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=61 PR:SR 64,0:58,0 211,16:158,19
20 48395962 MantaDEL:285799:0:0:0:3:0 CTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCACCTCTACTAAAAGTGCAAAATTAGCCGGACATGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCGCTTGAACCCAGAAGGTGGAGGTTGCAGCAAGCCGAGACAGCACCACTGCGCTCCAGCCTGGAAAACAAGAGGAAAACTTTGTCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGGCCCCAGCACAA C . MinSomaticScore END=48396290;SVTYPE=DEL;SVLEN=-328;CIGAR=1M328D;CIPOS=0,36;HOMLEN=36;HOMSEQ=TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC;SOMATIC;SOMATICSCORE=12 PR:SR 55,0:39,5 159,3:114,11
20 48395962 MantaDEL:285800:0:0:0:2:0 CTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCACCTCTACTAAAAGTGCAAAATTAGCCGGACATGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCGCTTGAACCCAGAAGGTGGAGGTTGCAGCAAGCCGAGACAGCACCACTGCGCTCCAGCCTGGAAAACAAGAGGAAAACTTTGTCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGGCCCCAGCACAA C . MinSomaticScore END=48396290;SVTYPE=DEL;SVLEN=-328;CIGAR=1M328D;CIPOS=0,36;HOMLEN=36;HOMSEQ=TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC;SOMATIC;SOMATICSCORE=12 PR:SR 55,0:39,5 159,3:114,11
21 9540563 MantaDEL:287558:0:0:0:3:0 TCCTCGCCGCTGTCCGCCTCTCAGCCGCTGTGCCCCTCTCCGCCGCTGTCCGCCTTTCCGCCGCGCCGCCGCTGTCCGCCTCTCCGCCG T . MinSomaticScore END=9540651;SVTYPE=DEL;SVLEN=-88;CIGAR=1M88D;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=23 PR:SR 1,0:11,0 18,0:34,9
21 42818739 MantaDEL:290943:0:1:0:5:0 T <DEL> . PASS END=42820831;SVTYPE=DEL;SVLEN=-2092;CIPOS=0,5;CIEND=0,5;HOMLEN=5;HOMSEQ=AGGAA;SOMATIC;SOMATICSCORE=39 PR:SR 75,0:44,0 178,13:102,2
22 20718870 MantaBND:291988:0:1:0:0:0:0 G [22:18655417[G . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:291988:0:1:0:0:0:1;IMPRECISE;CIPOS=-263,263;SOMATIC;SOMATICSCORE=15;BND_DEPTH=26;MATE_BND_DEPTH=45 PR 50,1 248,13
22 18655417 MantaBND:291988:0:1:0:0:0:1 A [22:20718870[A . MinSomaticScore SVTYPE=BND;MATEID=MantaBND:291988:0:1:0:0:0:0;IMPRECISE;CIPOS=-266,267;SOMATIC;SOMATICSCORE=15;BND_DEPTH=45;MATE_BND_DEPTH=26 PR 50,1 248,13
22 29761307 MantaDUP:TANDEM:293508:1:2:0:0:0 C <DUP:TANDEM> . MinSomaticScore END=29817400;SVTYPE=DUP;SVLEN=56093;IMPRECISE;CIPOS=-237,238;CIEND=-242,242;SOMATIC;SOMATICSCORE=14 PR 75,1 219,8
X 1938908 MantaDEL:296937:0:0:33:0:0 AGTAATATGATACTACCGCCACATGAGAGCAGTCATAATCACAACAGTAATATGATACTACCGCCGCATGAGAGCAGTAATCACAACAGTAATATGATACTACCGCCACATGAGAGCAGTCATAATCACAACAGTAATATGATACTACCACTACATGAGAGCAGTCATAATC A . MinSomaticScore END=1939079;SVTYPE=DEL;SVLEN=-171;CIGAR=1M171D;SOMATIC;SOMATICSCORE=28 PR:SR 8,0:27,0 0,0:9,8
X 30812564 MantaDUP:TANDEM:298722:1:1:16:0:0 G <DUP:TANDEM> . MinSomaticScore END=30813800;SVTYPE=DUP;SVLEN=1236;IMPRECISE;CIPOS=-284,285;CIEND=-413,413;SOMATIC;SOMATICSCORE=18 PR 41,0 125,7
X 31196943 MantaDEL:298762:0:1:0:0:0 A <DEL> . PASS END=31216210;SVTYPE=DEL;SVLEN=-19267;SVINSLEN=8;SVINSSEQ=ATGTAGTG;SOMATIC;SOMATICSCORE=103 PR:SR 26,0:19,0 65,47:45,40
X 31301203 MantaDEL:298761:0:1:0:0:0 T <DEL> . PASS END=32038749;SVTYPE=DEL;SVLEN=-737546;SVINSLEN=15;SVINSSEQ=TATTCATTATTATAA;SOMATIC;SOMATICSCORE=105 PR:SR 43,0:30,0 72,38:56,25
X 32098531 MantaDEL:298805:0:1:0:0:0 A <DEL> . PASS END=32201250;SVTYPE=DEL;SVLEN=-102719;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=CA;SOMATIC;SOMATICSCORE=123 PR:SR 33,0:18,0 5,37:6,25
X 32077855 MantaDEL:298795:0:1:0:0:0 G <DEL> . PASS END=32293096;SVTYPE=DEL;SVLEN=-215241;SVINSLEN=3;SVINSSEQ=GGC;SOMATIC;SOMATICSCORE=125 PR:SR 45,0:26,0 59,37:47,27
X 34059778 MantaDEL:298907:0:1:0:0:0 C <DEL> . PASS END=34062704;SVTYPE=DEL;SVLEN=-2926;SVINSLEN=10;SVINSSEQ=ATTATAGTAT;SOMATIC;SOMATICSCORE=120 PR:SR 25,0:31,0 0,21:0,31
X 54458396 MantaDEL:300042:0:1:0:0:0 TTGCAGTGAGCCCGGATTATGCCACTGCACTCCAGCCTGGCAACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTCCTAAGAAACTGCTCCTTTCTTCCATTAAATTTTTTTTTTTCAGATAGGGTCTCACTCTGTTGCCCAGGCTGGAG T . MinSomaticScore END=54458562;SVTYPE=DEL;SVLEN=-166;CIGAR=1M166D;CIPOS=0,7;HOMLEN=7;HOMSEQ=TGCAGTG;SOMATIC;SOMATICSCORE=24 PR:SR 10,0:12,0 29,0:51,7
X 69821368 MantaDEL:300621:0:0:0:0:0 TGAGGCCAGCATCATTCTTTTTTTTTTTTTTTTTTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCTGCAGTGTTTGTGTCCCTGGGTACTTAAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGATAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTCTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTCCACTTCTATCCACACAGACCCGGCAACCATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACCTCCCAGATGGGGTCCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAAGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGCGGCTG T . MinSomaticScore END=69822051;SVTYPE=DEL;SVLEN=-683;CIGAR=1M683D;CIPOS=0,17;HOMLEN=17;HOMSEQ=GAGGCCAGCATCATTCT;SOMATIC;SOMATICSCORE=16 PR:SR 42,0:20,0 117,0:53,5
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