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##fileformat=VCFv4.2
##ALT=<ID=DEL,Description="">
##ALT=<ID=INS,Description="">
##ALT=<ID=INV,Description="">
##ALT=<ID=INV,Description="">
##FILTER=<ID=FILTER,Description="">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=CIRPOS,Number=2,Type=Integer,Description="Confidence interval around remote breakend POS for imprecise variants">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=EVENT,Number=1,Type=String,Description="ID of event associated to breakend">
##INFO=<ID=HOMLEN,Number=.,Type=Integer,Description="Length of base pair identical micro-homology at event breakpoints">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical micro-homology at event breakpoints">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakends">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##contig=<ID=chr1,length=249250621>
#CHROM POS ID REF ALT QUAL FILTER INFO
chr1 1 . A <DEL> . .
chr1 1 . A C,<DEL> . .
chr1 1 . A <DEL>,<INS> . .
chr1 1 . A A[chr1:1[,A]chr1:1] . . SVTYPE=BND
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