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Package: SummarizedExperiment
Title: SummarizedExperiment container
Description: The SummarizedExperiment container contains one or more assays,
each represented by a matrix-like object of numeric or other mode.
The rows typically represent genomic ranges of interest and the columns
represent samples.
Version: 1.12.0
Encoding: UTF-8
Author: Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,
GenomeAnnotation
Depends: R (>= 3.2), methods, GenomicRanges (>= 1.33.6), Biobase,
DelayedArray (>= 0.3.20)
Imports: utils, stats, tools, Matrix, BiocGenerics (>= 0.15.3),
S4Vectors (>= 0.17.25), IRanges (>= 2.13.16), GenomeInfoDb (>=
1.13.1)
Suggests: annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown,
digest, jsonlite, rhdf5, HDF5Array (>= 1.7.5), airway, RUnit,
testthat
VignetteBuilder: knitr
License: Artistic-2.0
Collate: Assays-class.R SummarizedExperiment-class.R
RangedSummarizedExperiment-class.R intra-range-methods.R
inter-range-methods.R coverage-methods.R findOverlaps-methods.R
nearest-methods.R makeSummarizedExperimentFromExpressionSet.R
makeSummarizedExperimentFromDataFrame.R
makeSummarizedExperimentFromLoom.R readKallisto.R zzz.R
git_url: https://git.bioconductor.org/packages/SummarizedExperiment
git_branch: RELEASE_3_8
git_last_commit: 5f84168
git_last_commit_date: 2018-10-30
Date/Publication: 2018-10-30
NeedsCompilation: no
Packaged: 2018-10-31 00:43:27 UTC; biocbuild
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