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### =========================================================================
### nearest (and related) methods
### -------------------------------------------------------------------------
###
### precede & follow
for (f in c("precede", "follow")) {
setMethod(f, c("RangedSummarizedExperiment", "ANY"),
function(x, subject, select=c("arbitrary", "all"), ignore.strand=FALSE)
{
x <- rowRanges(x)
callGeneric()
}
)
setMethod(f, c("ANY", "RangedSummarizedExperiment"),
function(x, subject, select=c("arbitrary", "all"), ignore.strand=FALSE)
{
subject <- rowRanges(subject)
callGeneric()
}
)
setMethod(f, c("RangedSummarizedExperiment", "RangedSummarizedExperiment"),
function(x, subject, select=c("arbitrary", "all"), ignore.strand=FALSE)
{
x <- rowRanges(x)
subject <- rowRanges(subject)
callGeneric()
}
)
}
### nearest
setMethod("nearest", c("RangedSummarizedExperiment", "ANY"),
function(x, subject, select=c("arbitrary", "all"), ignore.strand=FALSE)
{
x <- rowRanges(x)
callGeneric()
}
)
setMethod("nearest", c("ANY", "RangedSummarizedExperiment"),
function(x, subject, select=c("arbitrary", "all"), ignore.strand=FALSE)
{
subject <- rowRanges(subject)
callGeneric()
}
)
setMethod("nearest", c("RangedSummarizedExperiment",
"RangedSummarizedExperiment"),
function(x, subject, select=c("arbitrary", "all"), ignore.strand=FALSE)
{
x <- rowRanges(x)
subject <- rowRanges(subject)
callGeneric()
}
)
### distance
setMethod("distance", c("RangedSummarizedExperiment", "ANY"),
function(x, y, ignore.strand=FALSE, ...)
{
x <- rowRanges(x)
callGeneric()
}
)
setMethod("distance", c("ANY", "RangedSummarizedExperiment"),
function(x, y, ignore.strand=FALSE, ...)
{
y <- rowRanges(y)
callGeneric()
}
)
setMethod("distance", c("RangedSummarizedExperiment",
"RangedSummarizedExperiment"),
function(x, y, ignore.strand=FALSE, ...)
{
x <- rowRanges(x)
y <- rowRanges(y)
callGeneric()
}
)
### distanceToNearest
setMethod("distanceToNearest", c("RangedSummarizedExperiment", "ANY"),
function(x, subject, ignore.strand=FALSE, ...)
{
x <- rowRanges(x)
callGeneric()
}
)
setMethod("distanceToNearest", c("ANY", "RangedSummarizedExperiment"),
function(x, subject, ignore.strand=FALSE, ...)
{
subject <- rowRanges(subject)
callGeneric()
}
)
setMethod("distanceToNearest", c("RangedSummarizedExperiment",
"RangedSummarizedExperiment"),
function(x, subject, ignore.strand=FALSE, ...)
{
x <- rowRanges(x)
subject <- rowRanges(subject)
callGeneric()
}
)
|
