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Package: SummarizedExperiment
Title: SummarizedExperiment container
Description: The SummarizedExperiment container contains one or more assays,
each represented by a matrix-like object of numeric or other mode.
The rows typically represent genomic ranges of interest and the columns
represent samples.
biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,
GenomeAnnotation
URL: https://bioconductor.org/packages/SummarizedExperiment
BugReports: https://github.com/Bioconductor/SummarizedExperiment/issues
Version: 1.20.0
License: Artistic-2.0
Encoding: UTF-8
Author: Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Depends: R (>= 3.2), methods, MatrixGenerics (>= 1.1.3), GenomicRanges
(>= 1.41.5), Biobase
Imports: utils, stats, tools, Matrix, BiocGenerics (>= 0.15.3),
S4Vectors (>= 0.27.12), IRanges (>= 2.23.9), GenomeInfoDb (>=
1.13.1), DelayedArray (>= 0.15.10)
Suggests: HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db,
GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, jsonlite,
rhdf5, airway, BiocStyle, knitr, rmarkdown, RUnit, testthat,
digest
VignetteBuilder: knitr
Collate: Assays-class.R SummarizedExperiment-class.R
RangedSummarizedExperiment-class.R intra-range-methods.R
inter-range-methods.R coverage-methods.R findOverlaps-methods.R
nearest-methods.R makeSummarizedExperimentFromExpressionSet.R
makeSummarizedExperimentFromDataFrame.R
makeSummarizedExperimentFromLoom.R readKallisto.R zzz.R
git_url: https://git.bioconductor.org/packages/SummarizedExperiment
git_branch: RELEASE_3_12
git_last_commit: 874aa87
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 03:49:08 UTC; biocbuild
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