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Explanation for binary files inside source package according to
https://lists.debian.org/debian-devel/2013/09/msg00332.html
Files: data/bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf.rda
Documented: man/bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf.Rd
TCGA CHOL MAF
Files: data/chol_maf.rda
Documented: man/chol_maf.Rd
TCGA CHOL MAF transformed to maftools object
Files: data/clinical.biotab.rda
Documented: man/clinical.biotab.Rd
A list of data frames with clinical data parsed from XML (code in vignettes)
Files: data/dataBRCA.rda
Documented: man/dataBRCA.Rd
TCGA data matrix BRCA
Files: data/dataDEGsFiltLevel.rda
Documented: man/dataDEGsFiltLevel.Rd
TCGA data matrix BRCA DEGs
Files: data/dataREAD_df.rda
Documented: man/dataREAD_df.Rd
TCGA data matrix READ
Files: data/dataREAD.rda
Documented: man/dataREAD.Rd
TCGA data SummarizedExperiment READ
Files: data/gbm.exp.harmonized.rda
Documented: man/gbm.exp.harmonized.Rd
A RangedSummarizedExperiment two samples with gene expression data from vignette
Files: data/gbm.exp.legacy.rda
Documented: man/gbm.exp.legacy.Rd
A RangedSummarizedExperiment two samples with gene expression data from vignette
Files: data/geneInfoHT.rda
Documented: man/geneInfoHT.Rd
geneInfoHT for normalization of HTseq data
Files: data/geneInfo.rda
Documented: man/geneInfo.Rd
geneInfo for normalization of RNAseq data
Files: data/met.gbm.27k.rda
Documented: man/met.gbm.27k.Rd
A DNA methylation RangedSummarizedExperiment for 8 samples (only first 20 probes)
Files: data/msi_results.rda
Documented: man/msi_results.Rd
MSI data for two samples
Files: data/PCBC_stemSig.rda
Documented: man/PCBC_stemSig.Rd
A numeric vector with Stemness signature trained on PCBC's dataset
Files: data/TabSubtypesCol_merged.rda
Documented: man/TabSubtypesCol_merged.Rd
TCGA samples with their Pam50 subtypes
Files: data/tabSurvKMcompleteDEGs.rda
Documented: man/tabSurvKMcompleteDEGs.Rd
tabSurvKMcompleteDEGs \keyword{internal
Files: data/Tumor.purity.rda
Documented: man/Tumor.purity.Rd
TCGA samples with their Tumor Purity measures
Files: R/sysdata.rda
Documentation: dump of system data of R run.
-- Andreas Tille <tille@debian.org> Mon, 23 Mar 2020 21:49:14 +0100
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