File: Enrichment.R

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r-bioc-tfbstools 1.20.0%2Bdfsg-1
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tfbsEnrichment <- function(pwm, query, background, cutoff=0.8){
  queryHits <- searchSeq(pwm, query, strand="+", min.score=cutoff)
  foo1 <- as(queryHits, "GRanges")
  backgroundHits <- searchSeq(pwm, background, strand="+", min.score=cutoff)
  foo2 <- as(backgroundHits, "GRanges")
}