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477 |
IUPAC2Matrix.Rd
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563 |
MA0004.1.Rd
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2,239 |
MotifSet-class.Rd
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2,514 |
PFMSimilarity-methods.Rd
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3,228 |
PWMSimilarity-methods.Rd
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990 |
SitePairSet-class.Rd
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876 |
SitePairSetList-class.Rd
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4,420 |
SiteSet-class.Rd
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1,788 |
SiteSetList-class.Rd
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301 |
TFBSTools-package.Rd
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2,046 |
TFFM-class.Rd
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8,713 |
XMatrix-class.Rd
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1,941 |
XMatrixList-class.Rd
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1,288 |
calConservation-methods.Rd
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3,046 |
deleteMatrixHavingID-methods.Rd
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1,780 |
dmmEM-methods.Rd
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1,190 |
getEmissionProb.Rd
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2,971 |
getMatrixByID-methods.Rd
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3,989 |
getMatrixSet-methods.Rd
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1,054 |
getPosProb.Rd
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662 |
makeFlatFileDir.Rd
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527 |
parseMEMEOutput.Rd
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1,229 |
permuteMatrix-methods.Rd
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3,763 |
rPWMDmm-methods.Rd
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1,327 |
readJASPARMatrix.Rd
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771 |
readXMLTFFM.Rd
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2,223 |
runMEME-methods.Rd
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1,465 |
sampleRanges.Rd
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7,836 |
searchAln-methods.Rd
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2,298 |
searchPairBSgenome-methods.Rd
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3,773 |
searchSeq-methods.Rd
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3,345 |
seqLogo.Rd
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584 |
shannon.entropy.Rd
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1,238 |
toGRangesList-methods.Rd
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3,740 |
toICM-methods.Rd
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4,579 |
toPWM-methods.Rd
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1,029 |
writeGFF3-methods.Rd
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