File: TODO

package info (click to toggle)
r-bioc-txdbmaker 1.2.1%2Bds-2
  • links: PTS, VCS
  • area: main
  • in suites: sid, trixie
  • size: 3,168 kB
  • sloc: makefile: 2
file content (9 lines) | stat: -rw-r--r-- 429 bytes parent folder | download
1
2
3
4
5
6
7
8
9
- Deprecate makeFeatureDbFromUCSC(), supportedUCSCFeatureDb*(), and
  UCSCFeatureDbTableSchema() in BioC 3.20. Not a single Bioconductor
  package is using this. Then defunct in BioC 3.21. Once defunct, we
  can get rid of rtracklayer dependency.

- makeTxDbFromUCSC(): Address the CDS non-completeness issue.
  The status of the CDS (complete or not) can be inferred from the
  cds*Stat field (when present) of the UCSC table.