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Explanation for binary files inside source package according to
https://lists.debian.org/debian-devel/2013/09/msg00332.html
Files: inst/extdata/sacCer2_sgdGene_txdb.sqlite
Obtained by running the following code on 2018/02/01:
txdb <- makeTxDbFromUCSC(genome="sacCer2", tablename="sgdGene")
saveDb(txdb, "sacCer2_sgdGene_txdb.sqlite")
Used in unit tests only.
Files: inst/extdata/GFF3_files/a.gff3
Small toy GFF3 file used in man page examples and unit tests.
Files: inst/extdata/GFF3_files/a.sqlite
Obtained by importing the above GFF3 file with makeTxDbFromGFF() then saving the result with saveDb(). Used in unit tests only.
Files: inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff
Subset of FlyBase file <https://ftp.flybase.net/genomes/dmel/dmel_r5.11_FB2008_08/gff/dmel-all-r5.11.gff.gz>. Used in unit tests only.
Files: inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite
Obtained by importing the above file with makeTxDbFromGFF() then saving the result with saveDb(). Used in unit tests only.
Files: inst/extdata/GTF_files/GCA_002204515.1_AaegL5.0_genomic.gtf.gz
Small compressed GTF file downloaded from NCBI FTP server on Nov 22, 2023. Original location: <https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/515/GCA_002204515.1_AaegL5.0/>. Used in man page examples and unit tests.
Files: inst/extdata/GTF_files/GCA_002204515.1_AaegL5.0_genomic.sqlite
Obtained by importing the above GTF file with makeTxDbFromGFF() then saving the result with saveDb(). Used in unit tests only.
-- Michael R. Crusoe <crusoe@debian.org> Sat, 20 Jul 2024 11:38:39 +0200
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