File: test_makeTxDbFromUCSC.R

package info (click to toggle)
r-bioc-txdbmaker 1.2.1%2Bds-2
  • links: PTS, VCS
  • area: main
  • in suites: sid, trixie
  • size: 3,168 kB
  • sloc: makefile: 2
file content (14 lines) | stat: -rw-r--r-- 379 bytes parent folder | download 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
 
###

test_makeTxDbFromUCSC <- function()
{
    txdb_file <- system.file("extdata",
                             "sacCer2_sgdGene_txdb.sqlite",
                             package="txdbmaker")
    target_txdb <- loadDb(txdb_file)

    current_txdb <- makeTxDbFromUCSC("sacCer2", "sgdGene")

    ok <- GenomicFeatures:::compareTxDbs(target_txdb, current_txdb)
    checkTrue(ok)
}