File: DESCRIPTION

package info (click to toggle)
r-bioc-tximport 1.18.0%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 300 kB
  • sloc: makefile: 5
file content (33 lines) | stat: -rw-r--r-- 1,516 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
Package: tximport
Version: 1.18.0
Title: Import and summarize transcript-level estimates for transcript-
        and gene-level analysis
Description: Imports transcript-level abundance, estimated counts and
        transcript lengths, and summarizes into matrices for use with
        downstream gene-level analysis packages. Average transcript
        length, weighted by sample-specific transcript abundance
        estimates, is provided as a matrix which can be used as an
        offset for different expression of gene-level counts.
Author: Michael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut],
        Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], 
        Matt Shirley [ctb], Avi Srivastava [ctb]
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
License: GPL (>=2)
VignetteBuilder: knitr
Imports: utils, stats, methods
Suggests: knitr, rmarkdown, testthat, tximportData,
        TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
        edgeR, csaw, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats,
        Matrix, fishpond
URL: https://github.com/mikelove/tximport
biocViews: DataImport, Preprocessing, RNASeq, Transcriptomics,
        Transcription, GeneExpression, ImmunoOncology
RoxygenNote: 7.1.1
NeedsCompilation: no
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/tximport
git_branch: RELEASE_3_12
git_last_commit: 58b20cb
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Packaged: 2020-10-28 04:07:24 UTC; biocbuild