File: tximport-package.Rd

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r-bioc-tximport 1.18.0%2Bdfsg-1
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/tximport.R
\docType{package}
\name{tximport-package}
\alias{tximport-package}
\title{Tximport package: import transcript-level quantification data}
\description{
The tximport package is designed to simplify import of transcript-level
abundances (TPM), estimated counts, and effective lengths from
a variety of upstream tools, for downstream transcript-level or
gene-level analysis. It has no dependencies beyond R, so as to
minimize requirements for downstream packages making use of
tximport.
}
\details{
The main function has the same name as the package:
\itemize{
\item \code{\link{tximport}} - with key arguments: \code{files}, \code{type}, \code{txOut}, and \code{tx2gene}
}

All software-related questions should be posted to the Bioconductor Support Site:

\url{https://support.bioconductor.org}

The code can be viewed at the GitHub repository,
which also lists the contributor code of conduct:

\url{https://github.com/mikelove/tximport}
}
\references{
Charlotte Soneson, Michael I. Love, Mark D. Robinson (2015)
Differential analyses for RNA-seq: transcript-level estimates
improve gene-level inferences. F1000Research.
\url{http://doi.org/10.12688/f1000research.7563}
}
\author{
Charlotte Soneson, Michael I. Love, Mark D. Robinson
}
\keyword{package}