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Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants, compute amino acid coding changes,
predict coding outcomes.
Version: 1.52.0
Authors@R: c(
person("Valerie", "Oberchain", role="aut"),
person("Martin", "Morgan", role="aut"),
person("Michael", "Lawrence", role="aut"),
person("Stephanie", "Gogarten", role="ctb"),
person("Bioconductor Package Maintainer", role="cre",
email="maintainer@bioconductor.org"))
License: Artistic-2.0
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0),
MatrixGenerics, GenomeInfoDb (>= 1.15.2), GenomicRanges (>=
1.41.5), SummarizedExperiment (>= 1.19.5), Rsamtools (>=
2.19.1)
Imports: utils, DBI, zlibbioc, Biobase, S4Vectors (>= 0.27.12), IRanges
(>= 2.23.9), XVector (>= 0.29.2), Biostrings (>= 2.57.2),
AnnotationDbi (>= 1.27.9), rtracklayer (>= 1.39.7), BSgenome
(>= 1.47.3), GenomicFeatures (>= 1.31.3)
Suggests: RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh37, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle, knitr, magick, jsonlite, httr, rjsoncons
LinkingTo: S4Vectors, IRanges, XVector, Biostrings, Rhtslib (>= 2.99.0)
SystemRequirements: GNU make
LazyLoad: yes
biocViews: DataImport, Sequencing, SNP, Annotation, Genetics,
VariantAnnotation
Video:
https://www.youtube.com/watch?v=Ro0lHQ_J--I&list=UUqaMSQd_h-2EDGsU6WDiX0Q
RoxygenNote: 7.3.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/VariantAnnotation
git_branch: RELEASE_3_20
git_last_commit: 054eb39
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: yes
Packaged: 2024-10-30 03:23:06 UTC; biocbuild
Author: Valerie Oberchain [aut],
Martin Morgan [aut],
Michael Lawrence [aut],
Stephanie Gogarten [ctb],
Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
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