1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43
|
\name{carni70}
\alias{carni70}
\docType{data}
\title{Phylogeny and quantitative traits of carnivora}
\description{
This data set describes the phylogeny of 70 carnivora as reported by Diniz-Filho and Torres (2002). It also gives the geographic range size and body size corresponding to these 70 species.
}
\usage{data(carni70)}
\format{
\code{carni70} is a list containing the 2 following objects:
\describe{
\item{tre}{is a character string giving the phylogenetic tree in Newick format.
Branch lengths are expressed as divergence times (millions of years)}
\item{tab}{is a data frame with 70 species and two traits: size (body size (kg)) ; range (geographic range size (km)).}
}}
\source{
Diniz-Filho, J. A. F., and N. M. Tôrres. (2002) Phylogenetic comparative methods and the
geographic range size-body size relationship in new world terrestrial carnivora. \emph{Evolutionary Ecology}, \bold{16}, 351--367.
}
\examples{
\dontrun{
data(carni70)
carni70.phy <- newick2phylog(carni70$tre)
plot(carni70.phy)
size <- scalewt(log(carni70$tab))[,1]
names(size) <- row.names(carni70$tab)
symbols.phylog(carni70.phy,size)
orthogram(size, phylog = carni70.phy)
yrange <- scalewt(carni70$tab[,2])
names(yrange) <- row.names(carni70$tab)
symbols.phylog(carni70.phy,yrange)
orthogram(yrange, phylog = carni70.phy)
if(adegraphicsLoaded()) {
g1 <- s.label(cbind.data.frame(size, yrange), plabel.cex = 0)
g2 <- addhist(g1)
} else {
s.hist(cbind.data.frame(size, yrange), clabel = 0)
}
}}
\keyword{datasets}
|