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CHANGES IN ADEPHYLO VERSION 1.1-7
FIXES
o sp.tips now returns ordered paths between tips
FRESH BLOOD
o Anders Ellern Bilgrau has joined the development team!
CHANGES IN ADEPHYLO VERSION 1.1-5
FIXES
o the new NAMESPACE selectively imports procedures to avoid
conflicts between ape, phylobase, and ade4. Thes packages are no
longer attached when loading adephylo
o most dataset examples have been 'dontrun-ed' to save time during
checks of the package on CRAN
CHANGES IN ADEPHYLO VERSION 1.1-4
NEW FEATURES
o added the function bullseye to plot fan-like phylogenies and
associated traits.
o added new methods for dibas.
CHANGES IN ADEPHYLO VERSION 1.1-3
NEW FEATURES
o added dibas, a new (and still under development) method for
describing/testing phylogenetic clusters
BUG FIXES
o replaced the use of .First.lib and library.dynam by more
up-to-date procedures
o replaced a call to a C procedure from ade4 to the same procedure
in adephylo
o replaced instances of 'printf' by 'Rprintf' in C procedures
CHANGES IN ADEPHYLO VERSION 1.1-1
BUG FIXES
o fixed the citation to be used for adephylo.
CHANGES IN ADEPHYLO VERSION 1.1-0
NEW FEATURES
o the phylogenetic Principal Component Analysis (pPCA, Jombart et
al. 2010) has been implemented in adephylo. See ?ppca for more
information.
o phylogenetic distances and proximities are now computed using
compiled C code, speeding up dramatically computations and making
the functions applicable to large trees (thousands of tips).
o table.phylo4d has now a color mode which allows using colors to
represent values of traits; this is usefull for large trees.
CHANGES IN ADEPHYLO VERSION 1.0-2
BUG FIXES
o standardization of variables in abouheif.moran is now performed using
uniform weights (instead of marginal phylogenetic weights)
CHANGES IN ADEPHYLO VERSION 1.0-1
NEW FEATURES
o first release on CRAN, first stable version
o compatible with the first stable release of the phylobase package
CHANGES IN ADEPHYLO VERSION 1.0-0
NEW FEATURES
o first release of the package with unstable status. Compatible
with phylobase (in development) and ape packages; package
only released on R-Forge, not CRAN.
o re-implements all phylogenetic methods and datasets available in ade4
o add new features to compute phylogenetic distances/proximities,
pPCA, tree walks, ...
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