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r-cran-alakazam 0.2.11-1
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dd32efbbbaad2f089deced53da114171 *DESCRIPTION
f2a7b45e85e224db538cbc18ada636ed *NAMESPACE
812f7f99a0ce7ad7fb75221b482444fe *NEWS.md
4fe2f8b68aca48d9202f2b293f766446 *R/Alakazam.R
9bacdbf9fdf6b34d796247445fa65050 *R/AminoAcids.R
598c705060d7493b8c917d0b7855cfe8 *R/Classes.R
fa13275b1d903702fe3c777b0cb2f086 *R/Core.R
befcaaa614d233f1ea8294feaec7d954 *R/Data.R
3db42a8dc214e52d479c24d86fd847e5 *R/Diversity.R
e863a05281b3e3ba30d4799048b84f87 *R/Gene.R
6180fb475972d712b5e11e6fee0b6381 *R/Lineage.R
6f8a72642969fd382cd8f88bc18e6b24 *R/RcppExports.R
6d7b7adec2f42a6a49c89fc14359300e *R/Sequence.R
19cd41781aeabfefbc0c3d29ac2128d2 *R/Topology.R
2be0a5362455c544103dcae08438ad32 *R/sysdata.rda
2615b26313f998cf9856f149f418f5d4 *README.md
24d47b834671900d75615a70ee8c2596 *build/vignette.rds
3d37dbf47ab43f43b0333666b76a0698 *data/ExampleDb.rda
4eda2d480c143a6a24a4ac186eda1c86 *data/ExampleTrees.rda
b034dfc6972e3bdd19b8801d55ac4b7e *inst/CITATION
769383a43ff88ff8ba46792363773a8c *inst/doc/AminoAcids-Vignette.R
5ef45c121608330c741efbe06f88024b *inst/doc/AminoAcids-Vignette.Rmd
a4eafb0e9f7ef7694e2651364a6f3320 *inst/doc/AminoAcids-Vignette.pdf
3383a8da6dde698a98711a902d62a7d7 *inst/doc/Diversity-Vignette.R
f1e1ac4eba39d19541c545330ead34b4 *inst/doc/Diversity-Vignette.Rmd
c9db9ee1a78746957108142bff5c14b0 *inst/doc/Diversity-Vignette.pdf
ddc3b83b2023540dd65b3cecacd3d7d9 *inst/doc/GeneUsage-Vignette.R
3640f68c150cfa03dab6d21dea08a2f1 *inst/doc/GeneUsage-Vignette.Rmd
c199cd518360f93c111e9db7224ab594 *inst/doc/GeneUsage-Vignette.pdf
c79ee7539b6516f9139d912470059ac9 *inst/doc/Lineage-Vignette.R
5797bd84f5db571df93216677f4d5ff3 *inst/doc/Lineage-Vignette.Rmd
1d493abe47cd07d1438d3771fef8d89f *inst/doc/Lineage-Vignette.pdf
992842730e2fb10e32081c3981f879cf *inst/doc/Topology-Vignette.R
bf365971a4fd926b5ad1f3da4e19514a *inst/doc/Topology-Vignette.Rmd
44303e3b360810e3cb1019b1549c34bd *inst/doc/Topology-Vignette.pdf
a9d1d1d3adacad855a87f97122d7deee *man/ABBREV_AA.Rd
ef4feb94ef0eed3fc24dff94db657312 *man/AbundanceCurve-class.Rd
13bf964a5e2d342c91185034bf2bb2cb *man/ChangeoClone-class.Rd
6f55697229268806bef6a10717678c02 *man/DEFAULT_COLORS.Rd
8456efc93e5684205bf2a6a81a61f4f9 *man/DiversityCurve-class.Rd
e1f63bee410ff9cda57997fae255372a *man/DiversityTest-class.Rd
5f16cf4f12c48f70f290452943a8df4b *man/EdgeTest-class.Rd
7cbe9e01a367a38af1cb8c90f3e74e98 *man/ExampleDb.Rd
f37509d5350c4a6b4b70a27547011fcb *man/ExampleTrees.Rd
10c34071f6e3ba2efde71291511649a7 *man/IMGT_REGIONS.Rd
c3c727588288b411491b2de77713ec4a *man/IUPAC_CODES.Rd
9b2771f4bbe1ef992d9445d0571df1bb *man/MRCATest-class.Rd
8b9b9d825218ff2e50165b713328a3bd *man/alakazam.Rd
db19819685d940da24bd3022a9d4e8be *man/aliphatic.Rd
f76f2555abccf60a8d955fc59b0fca0d *man/aminoAcidProperties.Rd
a8d03c199086e18e26fd673624ffa1a4 *man/baseTheme.Rd
fca083d63d31a36f2d65e950822b729b *man/buildPhylipLineage.Rd
bbfdb6340b92a396e2b4bb5f15cd5633 *man/bulk.Rd
90ded5990cae15e9a663e2390f29c06b *man/calcCoverage.Rd
8323086d27b4649a08b53ab31e443fd5 *man/calcDiversity.Rd
f5d0c57b59e2dc17cc82c1d59e29d4dd *man/charge.Rd
995aabe2f257ba72862d5b226ce03c66 *man/checkColumns.Rd
0a92493d7bcbd1058510be35635a17b8 *man/collapseDuplicates.Rd
4bdd6c4b5cbd60f9d48f5a8100b9109f *man/countClones.Rd
d482b62a929e07402a26730ac6aeb6e0 *man/countGenes.Rd
c00a5a8c1ec08b6994ea5e81def0db99 *man/countPatterns.Rd
228c0d1d4a6fc2744f10623b6342ead8 *man/cpuCount.Rd
92b01e6cb1cde7a8517fe76ded57597a *man/estimateAbundance.Rd
aa13061b337fd11847f4647661277e7f *man/extractVRegion.Rd
d9bcf6fa4885d0682e7f951faf7f2254 *man/getAAMatrix.Rd
f3d1c78e3419a6d133ac41d1b340edb6 *man/getDNAMatrix.Rd
b0cca26c9b43a786937622e56253d96f *man/getMRCA.Rd
fa963434d38a463062f82e0e2ad419e5 *man/getPathLengths.Rd
54a66931095fdf93778765e66b3fddbb *man/getSegment.Rd
32bb08194217d09ee7ed3a3baf8667e2 *man/gravy.Rd
43a957cfa4f3285543fad47363376786 *man/gridPlot.Rd
3c7ac668b2c4a1c483276526a6bb1d36 *man/groupGenes.Rd
56bbb424640d95b6e9fcb109c76df6f5 *man/isValidAASeq.Rd
ec1f214120321eb7bda794a7aa629313 *man/makeChangeoClone.Rd
16c622dc1a843365e20d348978727214 *man/makeTempDir.Rd
1eeab523917cc47d245c324644f4a387 *man/maskSeqEnds.Rd
18ef28997eb2cb4a67ae7f06c4856f6d *man/maskSeqGaps.Rd
d2b4a9f855805c2665dd6cc255e2e35c *man/nonsquareDist.Rd
d4afa5c07e9908b4968e5a8d56053ff9 *man/padSeqEnds.Rd
1e23c90638621a4425fc49ced382dc0c *man/pairwiseDist.Rd
a93f7fde10257f4d80ca1a3db58ebcaf *man/pairwiseEqual.Rd
89becaa4bdf1019397e451d162962d3b *man/permuteLabels.Rd
c1cde5220e1a3c5bd56ca101240ef84a *man/plotAbundanceCurve.Rd
22cdf6ee400ea2b89ce2842f5c9769b8 *man/plotDiversityCurve.Rd
3bc5e08dc1ba679fa7961c0ec7ca274e *man/plotDiversityTest.Rd
a6f9379eee8e3d49d7ed6f0b950fe5cf *man/plotEdgeTest.Rd
6ab45372b605cabb0fb80b3d2a7b4cc6 *man/plotMRCATest.Rd
28947e62ead3a9d5ee9b4edd3ea8be86 *man/plotSubtrees.Rd
57f38289101ef92fa9db938e09766869 *man/polar.Rd
7c2c3846d5f429596501499da0c9aec9 *man/progressBar.Rd
762e65cb16d72123a1c55b8180a0eb9c *man/rarefyDiversity.Rd
749b4b8b9daca586ea634d209ecbaf74 *man/readChangeoDb.Rd
7cc1917257918b65d8ff2c5e0f47e93c *man/seqDist.Rd
f5e27a7fa978350281f109893235c4d4 *man/seqEqual.Rd
1e0a5d095b881bde9dfa4603903b23e5 *man/sortGenes.Rd
4551455c0ab7d85eba44ccab82ddccd5 *man/stoufferMeta.Rd
636a225c9c90626bdeda60cb8c3f4d11 *man/summarizeSubtrees.Rd
6b7a7875c6dbd679c0c8bcb671581755 *man/tableEdges.Rd
0dad4ab03643159e4cc5cf167582abdc *man/testDiversity.Rd
6afa9381da1049bfa5784d60a623b60b *man/testEdges.Rd
042d002aab3b14029a92891b9c4ce161 *man/testMRCA.Rd
4e82d224ec3508acc060e174c9e132a8 *man/translateDNA.Rd
8242a3df101301f23473a572115fc432 *man/translateStrings.Rd
0fae9e0a11ec04f6fc43723538408b95 *man/writeChangeoDb.Rd
cb329cff8a75b0e073fa33b10f8e0f8e *src/RcppDistance.cpp
abf7eb815358ba8bbf07451999ce055e *src/RcppExports.cpp
5ef45c121608330c741efbe06f88024b *vignettes/AminoAcids-Vignette.Rmd
f1e1ac4eba39d19541c545330ead34b4 *vignettes/Diversity-Vignette.Rmd
3640f68c150cfa03dab6d21dea08a2f1 *vignettes/GeneUsage-Vignette.Rmd
5797bd84f5db571df93216677f4d5ff3 *vignettes/Lineage-Vignette.Rmd
bf365971a4fd926b5ad1f3da4e19514a *vignettes/Topology-Vignette.Rmd