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r-cran-alakazam 0.3.0-1
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11a75b484b73ed66a746f534c2db425c *DESCRIPTION
7d8e716d5cad7f028b6eeb1df290a4cc *NAMESPACE
40a133c0e6e74b5a774686da001d1668 *NEWS.md
ca71ac8c9f1d8edbc9b19e6401531916 *R/Alakazam.R
9bacdbf9fdf6b34d796247445fa65050 *R/AminoAcids.R
3d59eebf9943f3510b0ca93389977d1c *R/Classes.R
512ffc2aea484caf86ebec3d8935dc99 *R/Core.R
befcaaa614d233f1ea8294feaec7d954 *R/Data.R
3b8d18e200096ccba9062f85669d750c *R/Deprecated.R
b65ef59c839ec19943c1aca8854e1244 *R/Diversity.R
89e0f88b92632e7d2c40e26ea3a17cb2 *R/Gene.R
afa0a87a2db30cb2e7dc8d1bdb99777e *R/Lineage.R
6f8a72642969fd382cd8f88bc18e6b24 *R/RcppExports.R
6dbca72f6a0edfbc98cacc5b593f0f86 *R/Sequence.R
4c9ebd4e7d82427be89c3dc5a1f6b9f3 *R/Topology.R
2be0a5362455c544103dcae08438ad32 *R/sysdata.rda
2615b26313f998cf9856f149f418f5d4 *README.md
f8ece3b26c30a3bb6bd8ec44764ae1d9 *build/vignette.rds
3d37dbf47ab43f43b0333666b76a0698 *data/ExampleDb.rda
4eda2d480c143a6a24a4ac186eda1c86 *data/ExampleTrees.rda
b034dfc6972e3bdd19b8801d55ac4b7e *inst/CITATION
769383a43ff88ff8ba46792363773a8c *inst/doc/AminoAcids-Vignette.R
5ef45c121608330c741efbe06f88024b *inst/doc/AminoAcids-Vignette.Rmd
f84ac7d2f5f2f93a9ad02d9d605e272c *inst/doc/AminoAcids-Vignette.pdf
567e10dc479ec5913ac7ca35b40cb55f *inst/doc/Diversity-Vignette.R
97b1d8b038a585145d1bb47e2d6fed00 *inst/doc/Diversity-Vignette.Rmd
73c32e6b873e11a923169a6177d3205a *inst/doc/Diversity-Vignette.pdf
ddc3b83b2023540dd65b3cecacd3d7d9 *inst/doc/GeneUsage-Vignette.R
83ad6dea398535ef25421c56d82cdc2e *inst/doc/GeneUsage-Vignette.Rmd
dd4122c61b0446a2ed8588835528842d *inst/doc/GeneUsage-Vignette.pdf
2beeea3c76901926e254d5047e82bb50 *inst/doc/Lineage-Vignette.R
70e816fc27204bb6e2878b7a954c9d32 *inst/doc/Lineage-Vignette.Rmd
4db5cb06829e387c52ad300686001886 *inst/doc/Lineage-Vignette.pdf
992842730e2fb10e32081c3981f879cf *inst/doc/Topology-Vignette.R
bf365971a4fd926b5ad1f3da4e19514a *inst/doc/Topology-Vignette.Rmd
633d71fa30b30469b11c09922467051b *inst/doc/Topology-Vignette.pdf
a9d1d1d3adacad855a87f97122d7deee *man/ABBREV_AA.Rd
32a09fdb088b838a64d781bae48aeb1e *man/AbundanceCurve-class.Rd
13bf964a5e2d342c91185034bf2bb2cb *man/ChangeoClone-class.Rd
6f55697229268806bef6a10717678c02 *man/DEFAULT_COLORS.Rd
9dcdd69051851c5922d22691fd3bd016 *man/DiversityCurve-class.Rd
5f16cf4f12c48f70f290452943a8df4b *man/EdgeTest-class.Rd
7cbe9e01a367a38af1cb8c90f3e74e98 *man/ExampleDb.Rd
f37509d5350c4a6b4b70a27547011fcb *man/ExampleTrees.Rd
10c34071f6e3ba2efde71291511649a7 *man/IMGT_REGIONS.Rd
c3c727588288b411491b2de77713ec4a *man/IUPAC_CODES.Rd
9b2771f4bbe1ef992d9445d0571df1bb *man/MRCATest-class.Rd
f2dd52bc42f506b23fb49a218f9d4325 *man/alakazam.Rd
db19819685d940da24bd3022a9d4e8be *man/aliphatic.Rd
e94ee14d55708e18402a5c49f2cbe73b *man/alphaDiversity.Rd
f76f2555abccf60a8d955fc59b0fca0d *man/aminoAcidProperties.Rd
a8d03c199086e18e26fd673624ffa1a4 *man/baseTheme.Rd
fca083d63d31a36f2d65e950822b729b *man/buildPhylipLineage.Rd
bbfdb6340b92a396e2b4bb5f15cd5633 *man/bulk.Rd
cba7be37853cf41a680e3ebb75494efa *man/calcCoverage.Rd
af307d6e0209dbd3acaf15c8ec4c8295 *man/calcDiversity.Rd
f5d0c57b59e2dc17cc82c1d59e29d4dd *man/charge.Rd
995aabe2f257ba72862d5b226ce03c66 *man/checkColumns.Rd
0a92493d7bcbd1058510be35635a17b8 *man/collapseDuplicates.Rd
33503ba77fc27083b447048e18f39efc *man/combineIgphyml.Rd
c98f78d37057c9c948764fe25cede62d *man/countClones.Rd
6817349daffe1c582f51da33d8e3f829 *man/countGenes.Rd
c00a5a8c1ec08b6994ea5e81def0db99 *man/countPatterns.Rd
228c0d1d4a6fc2744f10623b6342ead8 *man/cpuCount.Rd
5c6082df3639a438d6bd66b3df6bf118 *man/estimateAbundance.Rd
aa13061b337fd11847f4647661277e7f *man/extractVRegion.Rd
d9bcf6fa4885d0682e7f951faf7f2254 *man/getAAMatrix.Rd
f3d1c78e3419a6d133ac41d1b340edb6 *man/getDNAMatrix.Rd
b0cca26c9b43a786937622e56253d96f *man/getMRCA.Rd
fa963434d38a463062f82e0e2ad419e5 *man/getPathLengths.Rd
54a66931095fdf93778765e66b3fddbb *man/getSegment.Rd
76697bcf036a02fbe6ddb7f351926ca9 *man/graphToPhylo.Rd
32bb08194217d09ee7ed3a3baf8667e2 *man/gravy.Rd
43a957cfa4f3285543fad47363376786 *man/gridPlot.Rd
cdee52b0e091f5e59e24005a1f07d4e7 *man/groupGenes.Rd
56bbb424640d95b6e9fcb109c76df6f5 *man/isValidAASeq.Rd
ec1f214120321eb7bda794a7aa629313 *man/makeChangeoClone.Rd
16c622dc1a843365e20d348978727214 *man/makeTempDir.Rd
1eeab523917cc47d245c324644f4a387 *man/maskSeqEnds.Rd
18ef28997eb2cb4a67ae7f06c4856f6d *man/maskSeqGaps.Rd
c4ee04b0eacd1e93066cc87c0520800d *man/nonsquareDist.Rd
d4afa5c07e9908b4968e5a8d56053ff9 *man/padSeqEnds.Rd
1e23c90638621a4425fc49ced382dc0c *man/pairwiseDist.Rd
a93f7fde10257f4d80ca1a3db58ebcaf *man/pairwiseEqual.Rd
89becaa4bdf1019397e451d162962d3b *man/permuteLabels.Rd
9992507f0b39b569c4eaac2c35e41ebc *man/phyloToGraph.Rd
dc4de6f1164569906211f69f7e04d022 *man/plotAbundanceCurve.Rd
d1ce553141b700218d62edce336dc484 *man/plotDiversityCurve.Rd
71367b7845074c59094daaddd4ba8df9 *man/plotDiversityTest.Rd
a6f9379eee8e3d49d7ed6f0b950fe5cf *man/plotEdgeTest.Rd
6ab45372b605cabb0fb80b3d2a7b4cc6 *man/plotMRCATest.Rd
28947e62ead3a9d5ee9b4edd3ea8be86 *man/plotSubtrees.Rd
57f38289101ef92fa9db938e09766869 *man/polar.Rd
7c2c3846d5f429596501499da0c9aec9 *man/progressBar.Rd
7542a4c71c1f1c63031c18106ccf8f1c *man/rarefyDiversity.Rd
749b4b8b9daca586ea634d209ecbaf74 *man/readChangeoDb.Rd
2df8fafbb6ff33d56e13a4d7aee29b74 *man/readIgphyml.Rd
7cc1917257918b65d8ff2c5e0f47e93c *man/seqDist.Rd
f5e27a7fa978350281f109893235c4d4 *man/seqEqual.Rd
1e0a5d095b881bde9dfa4603903b23e5 *man/sortGenes.Rd
4551455c0ab7d85eba44ccab82ddccd5 *man/stoufferMeta.Rd
636a225c9c90626bdeda60cb8c3f4d11 *man/summarizeSubtrees.Rd
6b7a7875c6dbd679c0c8bcb671581755 *man/tableEdges.Rd
8bccb70d88cb73c381dd1de03ba80455 *man/testDiversity.Rd
6afa9381da1049bfa5784d60a623b60b *man/testEdges.Rd
042d002aab3b14029a92891b9c4ce161 *man/testMRCA.Rd
4e82d224ec3508acc060e174c9e132a8 *man/translateDNA.Rd
8242a3df101301f23473a572115fc432 *man/translateStrings.Rd
0fae9e0a11ec04f6fc43723538408b95 *man/writeChangeoDb.Rd
3b377cf40c356ccde3fa098907bfd279 *src/RcppDistance.cpp
abf7eb815358ba8bbf07451999ce055e *src/RcppExports.cpp
5ef45c121608330c741efbe06f88024b *vignettes/AminoAcids-Vignette.Rmd
97b1d8b038a585145d1bb47e2d6fed00 *vignettes/Diversity-Vignette.Rmd
83ad6dea398535ef25421c56d82cdc2e *vignettes/GeneUsage-Vignette.Rmd
70e816fc27204bb6e2878b7a954c9d32 *vignettes/Lineage-Vignette.Rmd
bf365971a4fd926b5ad1f3da4e19514a *vignettes/Topology-Vignette.Rmd