File: CHANGELOG

package info (click to toggle)
r-cran-arm 1.11-2-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 500 kB
  • sloc: makefile: 2
file content (359 lines) | stat: -rw-r--r-- 14,077 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
2020-7-27 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
      * DESCRIPTION: (Version, Date): 1.11.2
      * NAMESPACE: import weighted.mean from stats and wtd.var from Hmisc
      * R/balance: new balance, print.balance, plot.balance function
      * R/matching: new matching function
      * man/balance: new description to new functions

2020-4-27 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
      * DESCRIPTION: (Version, Date): 1.11.0
      * NAMESPACE: import setClass from methods  (BUGS reported by Henrik)

2018-4-12 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
      * DESCRIPTION: (Version, Date): 1.10.1
      * R/bayesglm: fix a bug where scale=TRUE the prior.scale miscount the nvars.
      * R/sim.glm: improve the speed.  
      * man/standardized: fix a typo in the example

2016-11-24 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
      * DESCRIPTION: (Version, Date): 1.9-3
      * DESCRIPTION: new description, and change http to https in URL

2016-9-4 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
      * DESCRIPTION: add BugReports and change LICENSE to GPL >=3, fix Vincent's name (spelling error, sorry Vincent!)
=======
2016-9-2 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
      * DESCRIPTION: add BugReports and change LICENSE to GPL >=3
      * Doc fix Vincent's name

2016-8-21 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.9-1
   * NAMESPACE: import show from methods


2015-7-7 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.8-6
   * NAMESPACE: import more from base packages (new R rules)

2015-5-3 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.8-5
   * R/bayesglm: fix a missing line in the re-factorization of bayesglm.fit, when scaled=TRUE, and a column of X takes on more than two values, than prior.scale = prior.scale /(sd(x)*2).

2015-4-7 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.8-4
   * R/sigma.hat: sigma.hat changed to S3 function.
   * R/fitted: changed to S3 function
   * R/coef: coef, fixef, ranef, changed to S3 function


2015-3-31 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.8-03
   * R/bayesglm: revert back to a more straightforward coding, easier for debugging.
   * R/bayespolr: check n.iter to maxit, and pass it through control.


2014-8-27 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.7-07
   * R/readColumns: add read.columns()
   * R/sim: fix a bug in the name calling of beta.hat
   * man/readColumns: add description for read.columns()
   * NAMESPACE: export read.columns
   * DESCRIPTION: remove foreign and R2WinBUGS from suggests



2014-8-1 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.7-05 (thanks to Dr. Martyn Plummer's contribution)
   * R/bayesglm: fix several bugs in bayesglm
   * R/display: change the display for bayesglm to fit the changes stated above.
   * man/bayesglm:
        1. change M2 and M7 example codes to make them equivalent to M1 and M3.
        2. change the description for prior.scale for the gaussian family.
   * DESCRIPTION: remove foreign and R2WinBUGS from suggests

2014-4-27 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.7-03
   * R/bayesglm: revert back to the use of lm.fit to lm.wfit; put a stop when dispersion goes Inf

2014-4-24 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.7-02
   * R/simmer.R: simmer attaches names to fixed effects
   * R/fitted: fitted uses correct observational weights for glmms
   * R/bayesglm: use change the use of lm.fit to lm.wfit.

2013-11-25 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-10
   * make changes that fit to oldrelease R.
   * R/se.ranef, se.coef: change postVar to condVar

2013-9-23 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-09
   * start supporting new lme4

2013-9-23 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-09
   * start supporting new lme4

2013-8-22 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-07
   * revert back to 1.6-07, stop supporting the new lme4.
   * R/bayesglm: fix various bugs

2013-8-21 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-08
   * clean up DESCRIPTION and NAMESPACE

2013-7-12 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-07
   * made various change to adjust the new lme4
   * currently, sim.mer is not working, waiting for revision.


2013-5-9 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-06
   * NAMESPACE: export new method fitted() for sim.mer
   * R/fitted: add fitted() for sim.mer object
   * man/sim: add description for fitted() for sim.mer object
   * R/bayesglm fix a bug in bayesglm() in "subset"

2013-3-8 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-05
   * NAMESPACE: export logit()


2013-2-27 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-04
    * R/coefplot: fix a bug when the formula does not have an intercept
   * man/bayesglm: fix a coding error for weights in the bayesglm.fit


2013-2-20 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-03, add import from survey package
   * R/AllClass: set old class svyglm.
   * R/display: add svyglm method
   * R/coefplot: fix a bug when the formula does not have an intercept
   * man/display: add svyglm method

2013-1-5 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.6-01
   * R/bayesglm: fix an issue in updating start in the loop

2012-10-13 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * R/coefplot: fix an issue in coefplot.  No longer reset par when exit.
   * R/bayesglm: fix an issue in dev and family$state$valideta, family$state$mu

2012-10-03 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.5-08
   * R/bayesglm: fix various bugs in bayesglm

2012-09-26 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.5-07
   * R/balance: handle the situation when the formula in pscore.fit is not directly express.

2012-09-20 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.5-06
   * R/bayesglm: stop using .Fortran() here.

2012-06-6 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.5-05
   * man/bayesglm: add predictLM
   * R/bayesglm: add predict.bayesglm, predictLM to fit with model.matrixBayes

2012-04-27 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.5-04
   * man/bayesglm: rewrite the description for the option scaled.

2012-03-3 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.5-03
   * DESCRIPTION: add foreign as the required package
   * R/simmer: new sim() for mer class

2012-01-19 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.5-01
   * R/mcsamp: add mcsamp() back, though it is not working.
   * R/AllGeneric: set coef, print, as generic to pass the check

2011-11-21 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-14
   * R/.onAttach: fix the NOTE issue

2011-06-19 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-13
   * R/coefplot: fix margin control.

2011-06-11 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-12
   * R/bayespolr: add min.prior.scale
   * R/binnedplot: add nclass > 1 check
   * man/bayespolr: add min.prior.scale


2011-05-25 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-11
   * R/bayesglm: fix a bug  when there are some observation-weights that are zero.

2011-05-9 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-10
   * R/display: fix a bug in display.lm that fails to print out se.


2011-05-8 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-09
   * R/binnedplot: fix a bug of no sd when binnedplot only get one point.

2011-04-24 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-08
   * display: now return objects after displaying the fitted model.
   * sigma.hat: fix a bug in sigma.hat for mer


2011-03-1 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-07
   * AllClass:  add sim.polr class
   * coef: add coef() for sim.polr
   * sim: add sim() for polr

2011-03-1 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-06
   * NAMESPACE: export distcrete.histogram

2011-02-23 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-04
   * R/binnedplot: pass addition graphical parameters to the function.

2011-02-15 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-03
   * R/sim: fix a bug in sim.glm() when there is only an intercept
        as a predictor. (discovered by Barnes Benjamin)


2011-02-14 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-02
   * R/bayesglm: fix some dimension issues when NCOL(x.nobs)==1

2011-02-05 Yu-Sung Su     <suyusung@tsinghua.edu.cn>
   * DESCRIPTION (Version, Date): 1.4-01
   * R/load.first: lib --> lib.loc in packageDescription

2010-11-20 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-08
    * R/simmer: samples directly from the posterior
        of the fixed and random effects, given sigma and Sigma

2010-10-24 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-07
    add new methods for sim object, coef, fixef, ranef and sigm.hat

2010-9-24 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-06
    * R/bayesglm: fix a bug when a model of one predictor with no intercept is fitted
    * man/several: CRAN no longer alows genericFunction docType

2010-6-28 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-05
    * R/extractDIC: add s3 methods for extractDIC and extractAIC for the mer class
    * Rd/extractDIC

2010-1-21 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-04
    * R/standardize: add polr method
    * Rd/standardize: change the example code to make M1 and M2 equivalent.

2010-1-15 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-03
    * R/balanceplot: fix a bug in balance(), take out the intercept

2010-1-11 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-02
    * R/bayesglm: new bayesglm.fit (written by Daniel Lee)


2010-1-8 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.3-01.
    * R/bayesglm: a bug in x.matrix augmentation


2009-12-30 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-13.
    * R/bayesglm: smarter use of x matrix to save memory usage


2009-12-12 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-12.
    * R/simmer: use of sparse matrix in sim.mer

2009-12-08 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-11; add abind pacakge dependencyR
    * R/simmer: new sim functions for "mer" class

2009-11-22 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-10.
    * NAMESPACE: export logit

2009-4-29 Yu-Sung Su     <ys463@columbia.edu>
    * R/display: fix format inconsistency in sprintf (fround)

2009-4-13 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-9.
    * R/macthing: fix a bug in matching replace=TRUE


2009-3-31 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-8.
    * R/display: add option detail


2009-3-1 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-7.
    * R/display: fix a bug in display.mer


2009-2-26 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-6.
    * R/display: print out t-value, z-value, p-value

2009-2-20 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-5.
    * R/load.first: no longer set default digit=2

2009-2-17 Yu-Sung Su     <ys463@columbia.edu>
    * NAMESPACE: export binned.resids


2009-2-4 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-4, no longer need car
    * R/load.first: car is no longer required

2009-2-1 Yu-Sung Su     <ys463@columbia.edu>
    * man/coefplot: fixed doc error
    * man/sim: fixed doc error


2009-1-30 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-3.
    * R/coefplot: fixed margin bugs in coefplot.default

2009-1-29 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-2.
    * R/sim: for mer method, add option ranef. Users choose to return
      sim.ranef or not.

2009-1-28 Yu-Sung Su     <ys463@columbia.edu>
    * man: first attempt to clean up help files to comply the new rule.
            in particular, use \dQuote and \sQuote for "" and ''.
    * man/bayesglm: update reference
    * man/bayespolr: update reference

2009-1-22 Yu-Sung Su     <ys463@columbia.edu>
    * man/rescale: update reference.
    * man/standardize: update reference.

2009-1-16 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-1.
    * NAMESPACE: export S4 method for standardize
    * man/standardize: add description for S4 methods.
    * R/AllGeneric: add a generic function for standardize
    * R/standardize: add standardize.default, S4 methods for lm, glm and mer.

2009-1-03 Yu-Sung Su     <ys463@columbia.edu>
    * DESCRIPTION (Version, Date): 1.2-0.