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## ----setup, include=FALSE------------------------------------------------
knitr::opts_chunk$set(echo = TRUE, eval = interactive())
## ---- eval = FALSE-------------------------------------------------------
# chooseCRANmirror()
# install.packages("BiocManager")
## ---- eval = FALSE-------------------------------------------------------
# BiocManager::install(c("GenomicRanges", "Organism.dplyr"))
## ---- eval = FALSE-------------------------------------------------------
# BiocManager::install()
## ------------------------------------------------------------------------
# BiocManager::version()
## ------------------------------------------------------------------------
# BiocManager::valid()
## ------------------------------------------------------------------------
# avail <- BiocManager::available()
# length(avail) # all CRAN & Bioconductor packages
# BiocManager::available("BSgenome.Hsapiens") # BSgenome.Hsapiens.* packages
## ---- eval = FALSE-------------------------------------------------------
# BiocManager::install()
## ---- eval = FALSE-------------------------------------------------------
# BiocManager::valid()
## ---- eval = FALSE-------------------------------------------------------
# BiocManager::install(version="3.7")
## ---- eval = FALSE-------------------------------------------------------
# .libPaths()
## ---- eval = FALSE-------------------------------------------------------
# options(
# repos = "file:///path/to/CRAN-mirror",
# BioC_mirror = "file:///path/to/Bioc-mirror"
# )
## ---- eval = FALSE-------------------------------------------------------
# options(
# BIOCONDUCTOR_ONLINE_VERSION_DIAGNOSIS = FALSE
# )
## ---- eval = FALSE-------------------------------------------------------
# install.package(c("BiocManager", "BiocVersion"))
## ---- eval = TRUE--------------------------------------------------------
sessionInfo()
|
