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\name{write.entropy}
\Rdversion{1.1}
\alias{write.entropy}
\title{
Writes and displays entropy values
}
\description{
Given an entropy/dynamic_entropy object, writes each element (position or dihedral angle) and its entropy/dynamic_entropy value in a csv file, and displays the histogram.
}
\usage{
write.entropy(entropy, filepathroot )
}
\arguments{
\item{entropy}{
An object created by the \code{\link{entropy}} or the \code{\link{dynamic_entropy}} function.
}
\item{filepathroot}{
The root of the full path name for the entropy output file. If NULL, a "ENTROPY.csv" file is created in tempdir(). If not NULL, a "_ENTROPY.csv" extension is added to filepathroot.
}
}
\details{
The \code{\link{entropy}} function calculates entropy score for each position of an alignment file. The \code{\link{dynamic_entropy}}function calculate a "dynamic entropy" score for each side chain dihedral angle of a protein during a molecular simulations.
}
\value{
A csv file containing the elements and their scores. A png file displaying the histogram of the scores.
}
\author{
Antoine GARNIER
}
\examples{
#File path for output files
out <- tempdir()
file <- file.path(out,"test_seq")
#Importing multiple sequence alignment
align <- import.msf(system.file("msa/human_gpcr.msf", package = "Bios2cor"))
#Creating entropy object
entropy <- entropy(align, gap_ratio = 0.2)
#Writing results to csv file
write.entropy(entropy, file)
}
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