File: example.btp

package info (click to toggle)
r-cran-boolnet 2.1.9-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 3,016 kB
  • sloc: ansic: 12,452; sh: 16; makefile: 2
file content (211 lines) | stat: -rw-r--r-- 11,380 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
<BioTapestry version="3.1" >
  <workspace x="1" y="0" w="12000" h="9000" />
  <startupView/>
  <fonts>
    <font name="small" type="serif" isBold="true" isItalic="false" size="20" />
    <font name="medium" type="serif" isBold="true" isItalic="false" size="28" />
    <font name="cisRegName" type="serif" isBold="true" isItalic="false" size="28" />
    <font name="geneName" type="serif" isBold="true" isItalic="false" size="28" />
    <font name="link" type="serif" isBold="true" isItalic="false" size="28" />
    <font name="mediumLarge" type="sanSerif" isBold="true" isItalic="false" size="30" />
    <font name="netModule" type="sanSerif" isBold="true" isItalic="false" size="34" />
    <font name="large" type="sanSerif" isBold="true" isItalic="false" size="34" />
    <font name="notes" type="sanSerif" isBold="true" isItalic="false" size="34" />
    <font name="date" type="sanSerif" isBold="false" isItalic="false" size="25" />
    <font name="title" type="sanSerif" isBold="true" isItalic="false" size="32" />
  </fonts>
  <displayOptions />
  <colors>
    <color color="EX-dark-cyan" name="Dark Steel Blue" r="0" g="101" b="128" />
    <color color="EX-cyan" name="Cyan" r="0" g="255" b="255" />
    <color color="EX-yellow-orange" name="Tangerine" r="255" g="153" b="0" />
    <color color="EX-pale-green" name="Pale Green" r="133" g="204" b="102" />
    <color color="lightOrange" name="Light Orange" r="244" g="211" b="170" />
    <color color="EX-dark-green" name="Dark Green" r="39" g="128" b="0" />
    <color color="lightGray" name="Light Gray" r="240" g="240" b="240" />
    <color color="EX-pale-red-orange" name="Dark Salmon" r="230" g="156" b="138" />
    <color color="lightBlue" name="Light Blue" r="220" g="220" b="240" />
    <color color="EX-yellow-green" name="Lime" r="154" g="255" b="0" />
    <color color="EX-yellow" name="Gold" r="255" g="203" b="0" />
    <color color="EX-dark-gray-purple" name="Dark Blue" r="0" g="25" b="128" />
    <color color="yellowGreen" name="Yellow Green" r="246" g="249" b="170" />
    <color color="EX-dark-red" name="Deep Ochre" r="140" g="56" b="56" />
    <color color="EX-pale-magenta" name="Light Plum" r="211" g="138" b="230" />
    <color color="EX-purple" name="Indigo" r="102" g="51" b="255" />
    <color color="EX-pale-purple" name="Cornflower Blue" r="149" g="165" b="230" />
    <color color="EX-red" name="Bright Red" r="255" g="0" b="0" />
    <color color="EX-pale-yellow-green" name="Pale Goldenrod" r="221" g="230" b="138" />
    <color color="EX-dark-purple" name="Slate Blue" r="77" g="56" b="140" />
    <color color="EX-pale-cyan" name="Aquamarine" r="138" g="230" b="182" />
    <color color="EX-pure-blue" name="Blue" r="1" g="0" b="255" />
    <color color="inactiveLightBlue" name="Very Light Blue" r="235" g="235" b="250" />
    <color color="lightPurple" name="Light Purple" r="235" g="219" b="229" />
    <color color="black" name="Black" r="0" g="0" b="0" />
    <color color="EX-dark-yellow-green" name="Olive Green" r="115" g="128" b="0" />
    <color color="EX-dark-tan" name="Dark Tan" r="166" g="133" b="83" />
    <color color="EX-magenta" name="Fuchsia" r="254" g="0" b="255" />
    <color color="EX-pale-blue" name="Powder Blue" r="102" g="183" b="204" />
    <color color="white" name="White" r="255" g="255" b="255" />
    <color color="lightGreen" name="Light Green" r="214" g="239" b="209" />
    <color color="inactiveLightGreen" name="Very Light Green" r="230" g="255" b="220" />
    <color color="inactiveLightPurple" name="Very Light Purple" r="245" g="229" b="240" />
    <color color="EX-orange" name="Pumpkin Orange" r="255" g="103" b="0" />
    <color color="inactiveYellowGreen" name="Light Yellow Green" r="255" g="255" b="220" />
    <color color="inactiveLightOrange" name="Very Light Orange" r="255" g="230" b="200" />
    <color color="EX-medium-magenta" name="Mauve" r="166" g="83" b="166" />
    <color color="EX-blue-magenta" name="Bright Purple" r="154" g="0" b="255" />
    <color color="EX-green" name="Bright Green" r="1" g="255" b="0" />
    <color color="EX-dark-magenta" name="Violet" r="102" g="0" b="128" />
    <color color="inactiveLightGray" name="Very Light Gray" r="245" g="245" b="245" />
    <color color="EX-pale-blue-magenta" name="Lilac" r="146" g="102" b="204" />
    <color color="darkGray" name="Dark Gray" r="150" g="150" b="150" />
    <color color="EX-pale-yellow orange" name="Dark Wheat" r="204" g="175" b="102" />
    <color color="EX-dark-orange" name="Sienna" r="128" g="92" b="0" />
    <color color="EX-blue" name="Sky Blue" r="0" g="152" b="255" />
    <color color="EX-pale-red" name="Rose" r="204" g="102" b="153" />
  </colors>
  <images>
  </images>
  <userTreePaths>
  </userTreePaths>
  <genome name="Full Genome" id="bioTapA" >
    <rootLongName />
    <rootDescription />
    <nodes>
      <boxes>
        <box name="Input 1" id="3" >
          <simulationLogic type="AND" >
            <simParameters>
              <simParameter name="initVal" value="1" />
            </simParameters>
          </simulationLogic>
        </box>
        <box name="Input 2" id="4" >
          <simulationLogic type="AND" />
        </box>
      </boxes>
      <genes>
        <gene name="Gene 1" id="0" >
          <simulationLogic type="XOR" />
        </gene>
        <gene name="Gene 2" id="1" >
          <simulationLogic type="AND" />
        </gene>
        <gene name="Gene 3" id="2" >
          <simulationLogic type="OR" />
        </gene>
      </genes>
    </nodes>
    <links>
      <link label="" src="0" targ="0" sign="-" id="13" targPad="5" />
      <link label="" src="0" targ="1" sign="+" id="10" targPad="1" />
      <link label="" src="0" targ="2" sign="+" id="12" targPad="2" />
      <link label="" src="1" targ="2" sign="+" id="11" targPad="1" />
      <link label="" src="2" targ="1" sign="+" id="9" targPad="3" />
      <link label="" src="3" targ="0" sign="+" id="6" targPad="0" launchPad="1" />
      <link label="" src="4" targ="0" sign="-" id="8" targPad="2" launchPad="1" />
      <link label="" src="4" targ="1" sign="-" id="7" targPad="2" launchPad="1" />
    </links>
    <netOverlays>
    </netOverlays>
    <notes>
    </notes>
  </genome>
  <genomeInstances>
  </genomeInstances>
  <layouts>
    <layout name="bioTapB" genome="bioTapA" type="free" >
      <layoutMetadata />
      <props>
        <nprops>
          <nprop id="0" color="EX-orange" x="5870.0" y="4680.0" orient="right" />
          <nprop id="1" color="EX-dark-cyan" x="6440.0" y="4640.0" orient="right" />
          <nprop id="2" color="EX-blue" x="6160.0" y="4160.0" orient="right" />
          <nprop id="3" color="darkGray" x="5770.0" y="4620.0" orient="right" />
          <nprop id="4" color="darkGray" x="5450.0" y="4250.0" orient="right" />
        </nprops>
        <lprops>
          <linkBus labelX="5200.0" labelY="4280.0" labelDir="" src="0" >
            <drawStyle color="EX-orange" style="solid" thick="regular" />
            <segments>
              <linkSegment id="3" parent="0" strtX="6000.0" strtY="4690.0" endX="6080.0" endY="4690.0" />
              <linkSegment id="2" parent="1" strtX="6000.0" strtY="4640.0" endX="5930.0" endY="4640.0" />
              <linkSegment id="1" parent="0" strtX="6000.0" strtY="4690.0" endX="6000.0" endY="4640.0" />
              <linkSegment id="0" strtX="6000.0" strtY="4690.0" />
              <linkSegment id="7" parent="4" strtX="6080.0" strtY="4390.0" endX="6340.0" endY="4390.0" />
              <linkSegment id="6" parent="5" strtX="6080.0" strtY="4130.0" endX="6190.0" endY="4130.0" />
              <linkSegment id="5" parent="4" strtX="6080.0" strtY="4390.0" endX="6080.0" endY="4130.0" />
              <linkSegment id="4" parent="3" strtX="6080.0" strtY="4690.0" endX="6080.0" endY="4390.0" />
              <linkSegment id="9" parent="8" strtX="6340.0" strtY="4630.0" endX="6460.0" endY="4630.0" />
              <linkSegment id="8" parent="7" strtX="6340.0" strtY="4390.0" endX="6340.0" endY="4630.0" />
            </segments>
            <drops>
              <drop ref="*" connectStart="0" />
              <drop ref="10" connectEnd="9" />
              <drop ref="13" connectEnd="2" />
              <drop ref="12" connectEnd="6" />
            </drops>
          </linkBus>
          <linkBus labelX="4820.0" labelY="4280.0" labelDir="" src="1" >
            <drawStyle color="EX-dark-cyan" style="solid" thick="regular" />
            <segments>
              <linkSegment id="3" parent="2" strtX="6600.0" strtY="4870.0" endX="6100.0" endY="4870.0" />
              <linkSegment id="2" parent="0" strtX="6600.0" strtY="4650.0" endX="6600.0" endY="4870.0" />
              <linkSegment id="0" strtX="6600.0" strtY="4650.0" />
              <linkSegment id="5" parent="4" strtX="6100.0" strtY="4150.0" endX="6180.0" endY="4150.0" />
              <linkSegment id="4" parent="3" strtX="6100.0" strtY="4870.0" endX="6100.0" endY="4150.0" />
            </segments>
            <drops>
              <drop ref="*" connectStart="0" />
              <drop ref="11" connectEnd="5" />
            </drops>
          </linkBus>
          <linkBus labelX="3220.0" labelY="3790.0" labelDir="" src="3" >
            <drawStyle color="black" style="solid" thick="regular" />
            <segments>
              <linkSegment id="0" strtX="5880.0" strtY="4620.0" />
            </segments>
            <drops>
              <drop ref="*" connectStart="0" />
              <drop ref="6" connectStart="0" />
            </drops>
          </linkBus>
          <linkBus labelX="3310.0" labelY="3940.0" labelDir="" src="4" >
            <drawStyle color="black" style="solid" thick="regular" />
            <segments>
              <linkSegment id="3" parent="0" strtX="5620.0" strtY="4250.0" endX="5620.0" endY="4560.0" />
              <linkSegment id="0" strtX="5620.0" strtY="4250.0" />
              <linkSegment id="7" parent="6" strtX="6360.0" strtY="4250.0" endX="6360.0" endY="4610.0" />
              <linkSegment id="6" parent="0" strtX="5620.0" strtY="4250.0" endX="6360.0" endY="4250.0" />
              <linkSegment id="4" parent="3" strtX="5620.0" strtY="4560.0" endX="5900.0" endY="4560.0" />
              <linkSegment id="8" parent="7" strtX="6360.0" strtY="4610.0" endX="6470.0" endY="4610.0" />
            </segments>
            <drops>
              <drop ref="*" connectStart="0" />
              <drop ref="7" connectEnd="8" />
              <drop ref="8" connectEnd="4" />
            </drops>
          </linkBus>
          <linkBus labelX="4440.0" labelY="4280.0" labelDir="" src="2" >
            <drawStyle color="EX-blue" style="solid" thick="regular" />
            <segments>
              <linkSegment id="2" parent="0" strtX="6380.0" strtY="4170.0" endX="6380.0" endY="4590.0" />
              <linkSegment id="0" strtX="6380.0" strtY="4170.0" />
              <linkSegment id="4" parent="2" strtX="6380.0" strtY="4590.0" endX="6480.0" endY="4590.0" />
            </segments>
            <drops>
              <drop ref="*" connectStart="0" />
              <drop ref="9" connectEnd="4" />
            </drops>
          </linkBus>
        </lprops>
      </props>
    </layout>
  </layouts>
  <QPCR threshold="1.6" >
  </QPCR>
  <TimeCourseData>
  </TimeCourseData>
  <TemporalInputRangeData>
  </TemporalInputRangeData>
</BioTapestry>