1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211
|
<BioTapestry version="3.1" >
<workspace x="1" y="0" w="12000" h="9000" />
<startupView/>
<fonts>
<font name="small" type="serif" isBold="true" isItalic="false" size="20" />
<font name="medium" type="serif" isBold="true" isItalic="false" size="28" />
<font name="cisRegName" type="serif" isBold="true" isItalic="false" size="28" />
<font name="geneName" type="serif" isBold="true" isItalic="false" size="28" />
<font name="link" type="serif" isBold="true" isItalic="false" size="28" />
<font name="mediumLarge" type="sanSerif" isBold="true" isItalic="false" size="30" />
<font name="netModule" type="sanSerif" isBold="true" isItalic="false" size="34" />
<font name="large" type="sanSerif" isBold="true" isItalic="false" size="34" />
<font name="notes" type="sanSerif" isBold="true" isItalic="false" size="34" />
<font name="date" type="sanSerif" isBold="false" isItalic="false" size="25" />
<font name="title" type="sanSerif" isBold="true" isItalic="false" size="32" />
</fonts>
<displayOptions />
<colors>
<color color="EX-dark-cyan" name="Dark Steel Blue" r="0" g="101" b="128" />
<color color="EX-cyan" name="Cyan" r="0" g="255" b="255" />
<color color="EX-yellow-orange" name="Tangerine" r="255" g="153" b="0" />
<color color="EX-pale-green" name="Pale Green" r="133" g="204" b="102" />
<color color="lightOrange" name="Light Orange" r="244" g="211" b="170" />
<color color="EX-dark-green" name="Dark Green" r="39" g="128" b="0" />
<color color="lightGray" name="Light Gray" r="240" g="240" b="240" />
<color color="EX-pale-red-orange" name="Dark Salmon" r="230" g="156" b="138" />
<color color="lightBlue" name="Light Blue" r="220" g="220" b="240" />
<color color="EX-yellow-green" name="Lime" r="154" g="255" b="0" />
<color color="EX-yellow" name="Gold" r="255" g="203" b="0" />
<color color="EX-dark-gray-purple" name="Dark Blue" r="0" g="25" b="128" />
<color color="yellowGreen" name="Yellow Green" r="246" g="249" b="170" />
<color color="EX-dark-red" name="Deep Ochre" r="140" g="56" b="56" />
<color color="EX-pale-magenta" name="Light Plum" r="211" g="138" b="230" />
<color color="EX-purple" name="Indigo" r="102" g="51" b="255" />
<color color="EX-pale-purple" name="Cornflower Blue" r="149" g="165" b="230" />
<color color="EX-red" name="Bright Red" r="255" g="0" b="0" />
<color color="EX-pale-yellow-green" name="Pale Goldenrod" r="221" g="230" b="138" />
<color color="EX-dark-purple" name="Slate Blue" r="77" g="56" b="140" />
<color color="EX-pale-cyan" name="Aquamarine" r="138" g="230" b="182" />
<color color="EX-pure-blue" name="Blue" r="1" g="0" b="255" />
<color color="inactiveLightBlue" name="Very Light Blue" r="235" g="235" b="250" />
<color color="lightPurple" name="Light Purple" r="235" g="219" b="229" />
<color color="black" name="Black" r="0" g="0" b="0" />
<color color="EX-dark-yellow-green" name="Olive Green" r="115" g="128" b="0" />
<color color="EX-dark-tan" name="Dark Tan" r="166" g="133" b="83" />
<color color="EX-magenta" name="Fuchsia" r="254" g="0" b="255" />
<color color="EX-pale-blue" name="Powder Blue" r="102" g="183" b="204" />
<color color="white" name="White" r="255" g="255" b="255" />
<color color="lightGreen" name="Light Green" r="214" g="239" b="209" />
<color color="inactiveLightGreen" name="Very Light Green" r="230" g="255" b="220" />
<color color="inactiveLightPurple" name="Very Light Purple" r="245" g="229" b="240" />
<color color="EX-orange" name="Pumpkin Orange" r="255" g="103" b="0" />
<color color="inactiveYellowGreen" name="Light Yellow Green" r="255" g="255" b="220" />
<color color="inactiveLightOrange" name="Very Light Orange" r="255" g="230" b="200" />
<color color="EX-medium-magenta" name="Mauve" r="166" g="83" b="166" />
<color color="EX-blue-magenta" name="Bright Purple" r="154" g="0" b="255" />
<color color="EX-green" name="Bright Green" r="1" g="255" b="0" />
<color color="EX-dark-magenta" name="Violet" r="102" g="0" b="128" />
<color color="inactiveLightGray" name="Very Light Gray" r="245" g="245" b="245" />
<color color="EX-pale-blue-magenta" name="Lilac" r="146" g="102" b="204" />
<color color="darkGray" name="Dark Gray" r="150" g="150" b="150" />
<color color="EX-pale-yellow orange" name="Dark Wheat" r="204" g="175" b="102" />
<color color="EX-dark-orange" name="Sienna" r="128" g="92" b="0" />
<color color="EX-blue" name="Sky Blue" r="0" g="152" b="255" />
<color color="EX-pale-red" name="Rose" r="204" g="102" b="153" />
</colors>
<images>
</images>
<userTreePaths>
</userTreePaths>
<genome name="Full Genome" id="bioTapA" >
<rootLongName />
<rootDescription />
<nodes>
<boxes>
<box name="Input 1" id="3" >
<simulationLogic type="AND" >
<simParameters>
<simParameter name="initVal" value="1" />
</simParameters>
</simulationLogic>
</box>
<box name="Input 2" id="4" >
<simulationLogic type="AND" />
</box>
</boxes>
<genes>
<gene name="Gene 1" id="0" >
<simulationLogic type="XOR" />
</gene>
<gene name="Gene 2" id="1" >
<simulationLogic type="AND" />
</gene>
<gene name="Gene 3" id="2" >
<simulationLogic type="OR" />
</gene>
</genes>
</nodes>
<links>
<link label="" src="0" targ="0" sign="-" id="13" targPad="5" />
<link label="" src="0" targ="1" sign="+" id="10" targPad="1" />
<link label="" src="0" targ="2" sign="+" id="12" targPad="2" />
<link label="" src="1" targ="2" sign="+" id="11" targPad="1" />
<link label="" src="2" targ="1" sign="+" id="9" targPad="3" />
<link label="" src="3" targ="0" sign="+" id="6" targPad="0" launchPad="1" />
<link label="" src="4" targ="0" sign="-" id="8" targPad="2" launchPad="1" />
<link label="" src="4" targ="1" sign="-" id="7" targPad="2" launchPad="1" />
</links>
<netOverlays>
</netOverlays>
<notes>
</notes>
</genome>
<genomeInstances>
</genomeInstances>
<layouts>
<layout name="bioTapB" genome="bioTapA" type="free" >
<layoutMetadata />
<props>
<nprops>
<nprop id="0" color="EX-orange" x="5870.0" y="4680.0" orient="right" />
<nprop id="1" color="EX-dark-cyan" x="6440.0" y="4640.0" orient="right" />
<nprop id="2" color="EX-blue" x="6160.0" y="4160.0" orient="right" />
<nprop id="3" color="darkGray" x="5770.0" y="4620.0" orient="right" />
<nprop id="4" color="darkGray" x="5450.0" y="4250.0" orient="right" />
</nprops>
<lprops>
<linkBus labelX="5200.0" labelY="4280.0" labelDir="" src="0" >
<drawStyle color="EX-orange" style="solid" thick="regular" />
<segments>
<linkSegment id="3" parent="0" strtX="6000.0" strtY="4690.0" endX="6080.0" endY="4690.0" />
<linkSegment id="2" parent="1" strtX="6000.0" strtY="4640.0" endX="5930.0" endY="4640.0" />
<linkSegment id="1" parent="0" strtX="6000.0" strtY="4690.0" endX="6000.0" endY="4640.0" />
<linkSegment id="0" strtX="6000.0" strtY="4690.0" />
<linkSegment id="7" parent="4" strtX="6080.0" strtY="4390.0" endX="6340.0" endY="4390.0" />
<linkSegment id="6" parent="5" strtX="6080.0" strtY="4130.0" endX="6190.0" endY="4130.0" />
<linkSegment id="5" parent="4" strtX="6080.0" strtY="4390.0" endX="6080.0" endY="4130.0" />
<linkSegment id="4" parent="3" strtX="6080.0" strtY="4690.0" endX="6080.0" endY="4390.0" />
<linkSegment id="9" parent="8" strtX="6340.0" strtY="4630.0" endX="6460.0" endY="4630.0" />
<linkSegment id="8" parent="7" strtX="6340.0" strtY="4390.0" endX="6340.0" endY="4630.0" />
</segments>
<drops>
<drop ref="*" connectStart="0" />
<drop ref="10" connectEnd="9" />
<drop ref="13" connectEnd="2" />
<drop ref="12" connectEnd="6" />
</drops>
</linkBus>
<linkBus labelX="4820.0" labelY="4280.0" labelDir="" src="1" >
<drawStyle color="EX-dark-cyan" style="solid" thick="regular" />
<segments>
<linkSegment id="3" parent="2" strtX="6600.0" strtY="4870.0" endX="6100.0" endY="4870.0" />
<linkSegment id="2" parent="0" strtX="6600.0" strtY="4650.0" endX="6600.0" endY="4870.0" />
<linkSegment id="0" strtX="6600.0" strtY="4650.0" />
<linkSegment id="5" parent="4" strtX="6100.0" strtY="4150.0" endX="6180.0" endY="4150.0" />
<linkSegment id="4" parent="3" strtX="6100.0" strtY="4870.0" endX="6100.0" endY="4150.0" />
</segments>
<drops>
<drop ref="*" connectStart="0" />
<drop ref="11" connectEnd="5" />
</drops>
</linkBus>
<linkBus labelX="3220.0" labelY="3790.0" labelDir="" src="3" >
<drawStyle color="black" style="solid" thick="regular" />
<segments>
<linkSegment id="0" strtX="5880.0" strtY="4620.0" />
</segments>
<drops>
<drop ref="*" connectStart="0" />
<drop ref="6" connectStart="0" />
</drops>
</linkBus>
<linkBus labelX="3310.0" labelY="3940.0" labelDir="" src="4" >
<drawStyle color="black" style="solid" thick="regular" />
<segments>
<linkSegment id="3" parent="0" strtX="5620.0" strtY="4250.0" endX="5620.0" endY="4560.0" />
<linkSegment id="0" strtX="5620.0" strtY="4250.0" />
<linkSegment id="7" parent="6" strtX="6360.0" strtY="4250.0" endX="6360.0" endY="4610.0" />
<linkSegment id="6" parent="0" strtX="5620.0" strtY="4250.0" endX="6360.0" endY="4250.0" />
<linkSegment id="4" parent="3" strtX="5620.0" strtY="4560.0" endX="5900.0" endY="4560.0" />
<linkSegment id="8" parent="7" strtX="6360.0" strtY="4610.0" endX="6470.0" endY="4610.0" />
</segments>
<drops>
<drop ref="*" connectStart="0" />
<drop ref="7" connectEnd="8" />
<drop ref="8" connectEnd="4" />
</drops>
</linkBus>
<linkBus labelX="4440.0" labelY="4280.0" labelDir="" src="2" >
<drawStyle color="EX-blue" style="solid" thick="regular" />
<segments>
<linkSegment id="2" parent="0" strtX="6380.0" strtY="4170.0" endX="6380.0" endY="4590.0" />
<linkSegment id="0" strtX="6380.0" strtY="4170.0" />
<linkSegment id="4" parent="2" strtX="6380.0" strtY="4590.0" endX="6480.0" endY="4590.0" />
</segments>
<drops>
<drop ref="*" connectStart="0" />
<drop ref="9" connectEnd="4" />
</drops>
</linkBus>
</lprops>
</props>
</layout>
</layouts>
<QPCR threshold="1.6" >
</QPCR>
<TimeCourseData>
</TimeCourseData>
<TemporalInputRangeData>
</TemporalInputRangeData>
</BioTapestry>
|