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################################
# Implementation of Table Joins
################################
sort_merge_join <- function(x_sorted, table, count = FALSE) {
ot <- radixorderv(table, decreasing = FALSE, na.last = TRUE)
.Call(C_sort_merge_join, x_sorted, table, ot, count)
}
multi_match <- function(m, g) .Call(C_multi_match, m, g)
# Modeled after Pandas/Polars:
# https://pandas.pydata.org/docs/reference/api/pandas.DataFrame.join.html
# https://pola-rs.github.io/polars/py-polars/html/reference/dataframe/api/polars.DataFrame.join.html
join <- function(x, y,
on = NULL, # union(names(x), names(y)),
how = "left",
suffix = NULL, # c("_x", "_y")
validate = "m:m", # NULL,
multiple = FALSE,
sort = FALSE,
keep.col.order = TRUE,
drop.dup.cols = FALSE,
verbose = .op[["verbose"]],
require = NULL, # E.g. require = list(x = 0.9, y = 0.8, on.fail = "error")
column = NULL,
attr = NULL, ...) { # method = c("hash", "radix") -> implicit to sort...
# Initial checks
if(!is.list(x)) stop("x must be a list")
if(!is.list(y)) stop("y must be a list")
# Get names and attributes
ax <- attributes(x)
x_name <- as.character(substitute(x))
if(length(x_name) != 1L || x_name == ".") x_name <- "x" # Piped use
y_name <- as.character(substitute(y))
if(length(y_name) != 1L || y_name == ".") y_name <- "y" # Piped use
oldClass(x) <- NULL
oldClass(y) <- NULL
xnam <- names(x)
ynam <- names(y)
how <- switch(how, l = "left", r = "right", i = "inner", f = "full", s = "semi", a = "anti", how)
# Get join columns
if(is.null(on)) {
xon <- on <- xnam[xnam %in% ynam]
if(length(on) == 0L) stop("No matching column names between x and y, please specify columns to join 'on'.")
if(anyDuplicated.default(on) > 0L) stop("Duplicated join columns: ", paste(on[fduplicated(on)], collapse = ", "), ". Please supply 'on' columns and ensure that each data frame has unique column names.")
ixon <- match(on, xnam)
iyon <- match(on, ynam)
} else {
if(!is.character(on)) stop("need to provide character 'on'")
xon <- names(on)
if(is.null(xon)) xon <- on
else if(any(miss <- !nzchar(xon))) xon[miss] <- on[miss]
ixon <- ckmatch(xon, xnam, "Unknown x columns:")
iyon <- ckmatch(on, ynam, "Unknown y columns:")
}
# Matching step
rjoin <- switch(how, right = TRUE, FALSE)
count <- verbose || validate != "m:m" || length(attr) || length(require)
if(sort) {
if(rjoin) {
y <- roworderv(y, cols = iyon, decreasing = FALSE, na.last = TRUE)
m <- sort_merge_join(y[iyon], x[ixon], count = count)
} else {
x <- roworderv(x, cols = ixon, decreasing = FALSE, na.last = TRUE)
m <- sort_merge_join(x[ixon], y[iyon], count = count)
if(how == "left" && length(ax[["row.names"]])) ax[["row.names"]] <- attr(x, "row.names")
}
} else {
m <- if(rjoin) fmatch(y[iyon], x[ixon], nomatch = NA_integer_, count = count, ...) else
fmatch(x[ixon], y[iyon], nomatch = NA_integer_, count = count, ...)
}
# TODO: validate full join...
switch(validate,
"m:m" = TRUE,
"1:1" = {
c1 <- attr(m, "N.distinct") != length(m) - attr(m, "N.nomatch")
c2 <- attr(m, "N.groups") != attr(m, "N.distinct") && any_duplicated(if(rjoin) x[ixon] else y[iyon])
if(rjoin) {
tmp <- c2
c2 <- c1
c1 <- tmp
}
if(c1 || c2) stop("Join is not 1:1: ", x_name, " (x) is ", if(c1) "not " else "", "unique on the join columns; ", y_name, " (y) is ", if(c2) "not " else "", "unique on the join columns")
},
"1:m" = {
cond <- if(rjoin) attr(m, "N.groups") != attr(m, "N.distinct") && any_duplicated(x[ixon]) else
attr(m, "N.distinct") != length(m) - attr(m, "N.nomatch")
if(cond) stop("Join is not 1:m: ", x_name, " (x) is not unique on the join columns")
},
"m:1" = {
cond <- if(rjoin) attr(m, "N.distinct") != length(m) - attr(m, "N.nomatch") else
attr(m, "N.groups") != attr(m, "N.distinct") && any_duplicated(y[iyon])
if(cond) stop("Join is not m:1: ", y_name, " (y) is not unique on the join columns")
},
stop("validate must be one of '1:1', '1:m', 'm:1' or 'm:m'")
)
if(multiple) {
g <- groupv(if(rjoin) x[ixon] else y[iyon], group.sizes = TRUE)
mi <- m
m <- multi_match(m, g)
if(is.list(m)) {
multiple <- 2L
# TODO: Optimize if drop.dup.cols
if(rjoin) y <- .Call(C_subsetDT, y, m[[1L]], seq_along(y), FALSE)
else x <- .Call(C_subsetDT, x, m[[1L]], seq_along(x), FALSE)
m <- m[[2L]]
if(how == "left" && length(ax[["row.names"]])) ax[["row.names"]] <- .set_row_names(length(m))
}
}
if(verbose || length(require)) {
Nx <- if(rjoin) attr(m, "N.groups") else length(if(multiple) mi else m)
Ny <- if(rjoin) length(if(multiple) mi else m) else attr(m, "N.groups")
nx <- if(rjoin) attr(m, "N.distinct") else Nx - attr(m, "N.nomatch")
ny <- if(rjoin) Ny - attr(m, "N.nomatch") else attr(m, "N.distinct")
if(length(require)) {
if(length(require$x) && require$x > nx/Nx) {
msg <- sprintf("Matched %#.1f%% of records in table %s (x), but %#.1f%% is required", nx/Nx*100, x_name, require$x*100)
switch_msg(msg, require$fail)
}
if(length(require$y) && require$y > ny/Ny) {
msg <- sprintf("Matched %#.1f%% of records in table %s (y), but %#.1f%% is required", ny/Ny*100, y_name, require$y*100)
switch_msg(msg, require$fail)
}
}
if(verbose) {
cin_x <- if(verbose == 2L) paste0(xon, ":", vclasses(x[ixon], FALSE)) else xon
cin_y <- if(verbose == 2L) paste0(on, ":", vclasses(y[iyon], FALSE)) else on
xstat <- paste0(nx, "/", Nx, " (", signif(nx/Nx*100, 3), "%)")
ystat <- paste0(ny, "/", Ny, " (", signif(ny/Ny*100, 3), "%)")
if(multiple) {
validate <- switch(validate,
"1:1" = "1:1",
"1:m" = paste0("1:", round(ny / attr(mi, "N.distinct"), 2)),
"m:1" = paste0(round(nx / attr(mi, "N.distinct"), 2), ":1"),
"m:m" = paste(round(c(nx, ny) / attr(mi, "N.distinct"), 2), collapse = ":"))
} else {
validate <- switch(validate,
"1:1" = "1:1",
"1:m" = paste0("1:", if(rjoin) round(ny / nx, 2) else "1st"),
"m:1" = paste0(if(rjoin) "1st" else round(nx / ny, 2), ":1"),
"m:m" = if(rjoin) paste0("1st:", round(ny / nx, 2)) else paste0(round(nx / ny, 2), ":1st"))
}
cat(how, " join: ",
x_name, "[", paste(cin_x, collapse = ", "), "] ",
xstat, " <", validate , "> ",
y_name, "[", paste(cin_y, collapse = ", "), "] ",
ystat, "\n", sep = "")
}
}
# Check for duplicate columns and suffix as needed
if(any(nm <- match(ynam[-iyon], xnam, nomatch = 0L)) && switch(how, semi = FALSE, anti = FALSE, TRUE)) {
nnm <- nm != 0L
nam <- xnam[nm[nnm]]
if(is.character(drop.dup.cols) || drop.dup.cols) {
switch(drop.dup.cols,
y = {
rmyi <- logical(length(ynam))
rmyi[-iyon][nnm] <- TRUE
y[rmyi] <- NULL
ynam <- names(y)
tmp <- rmyi
tmp[iyon] <- TRUE
iyon <- which(tmp[!rmyi])
if(verbose) cat("duplicate columns: ", paste(nam, collapse = ", "), " => dropped from y\n", sep = "")
},
x = {
x[nm[nnm]] <- NULL
tmp <- logical(length(xnam))
xnam <- names(x)
tmp[ixon] <- TRUE
ixon <- which(tmp[-nm[nnm]])
if(verbose) cat("duplicate columns: ", paste(nam, collapse = ", "), " => dropped from x\n", sep = "")
},
stop("drop.dup.cols needs to be 'y', 'x', or TRUE")
)
} else {
if(length(suffix) <= 1L) { # Only appends y with name
if(is.null(suffix)) suffix <- paste0("_", y_name)
names(y)[-iyon][nnm] <- paste0(nam, suffix)
} else {
names(x)[nm[nnm]] <- paste0(nam, suffix[[1L]]) # if(suffix[[1L]] != "") ??
names(y)[-iyon][nnm] <- paste0(nam, suffix[[2L]])
}
if(verbose) cat("duplicate columns: ", paste(nam, collapse = ", "), " => renamed using suffix ",
if(length(suffix) == 1L) paste0("'", suffix, "' for y") else paste0("'", suffix[[1L]], "' for x and '", suffix[[2L]], "' for y"), "\n", sep = "")
}
}
# Core: do the joins
res <- switch(how,
left = {
y_res <- if(identical(unattrib(m), seq_row(y))) y[-iyon] else .Call(C_subsetDT, y, m, seq_along(y)[-iyon], if(count) attr(m, "N.nomatch") else TRUE)
c(x, y_res)
},
inner = {
anyna <- if(count) attr(m, "N.nomatch") > 0L else anyNA(m)
if(anyna) {
x_ind <- whichNA(m, invert = TRUE)
x <- .Call(C_subsetDT, x, x_ind, seq_along(x), FALSE)
m <- na_rm(m)
# rn <- ax[["row.names"]] # TODO: Works inside switch??
# if(length(rn)) ax[["row.names"]] <- if(is.numeric(rn) || is.null(rn) || rn[1L] == "1")
# .set_row_names(length(x_ind)) else Csv(rn, x_ind)
}
y_res <- if(identical(unattrib(m), seq_row(y))) y[-iyon] else .Call(C_subsetDT, y, m, seq_along(y)[-iyon], FALSE)
c(x, y_res)
},
full = {
cond <- !count || attr(m, "N.distinct") != attr(m, "N.groups")
if(cond) {
um <- if(!count || length(m)-attr(m, "N.distinct")-attr(m, "N.nomatch") != 0L)
.Call(C_funique, m) else m # This gets the rows of table matched
if(!count || attr(m, "N.nomatch")) um <- na_rm(um)
if(count) tsize <- attr(m, "N.groups")
else {
tsize <- fnrow(y)
cond <- length(um) != tsize
}
}
if(cond) { # TODO: special case ? 1 distinct value etc.??
tind <- if(length(um)) seq_len(tsize)[-um] else seq_len(tsize) # TODO: Table may not be unique.
res_nrow <- length(m) + length(tind)
x_res <- .Call(C_subsetDT, x, seq_len(res_nrow), seq_along(x)[-ixon], TRUE) # Need check here because oversize indices !!
y_res <- .Call(C_subsetDT, y, vec(list(m, tind)), seq_along(y)[-iyon], TRUE) # Need check here because oversize indices !!
on_res <- .Call(C_rbindlist, list(x[ixon], .Call(C_subsetDT, y, tind, iyon, FALSE)), FALSE, FALSE, NULL)
# if(length(ax[["row.names"]])) ax[["row.names"]] <- .set_row_names(res_nrow)
if(keep.col.order) {
if(length(x_res)) add_vars(x_res, pos = ixon) <- on_res
else x_res <- on_res
c(x_res, y_res)
} else {
keep.col.order <- 2L # has global effects !!
c(on_res, x_res, y_res)
}
} else { # If all elements of table are matched, this is simply a left join
how <- if(multiple == 2L) "left_setrn" else "left"
y_res <- if(identical(unattrib(m), seq_row(y))) y[-iyon] else .Call(C_subsetDT, y, m, seq_along(y)[-iyon], if(count) attr(m, "N.nomatch") else TRUE) # anyNA(um) ??
c(x, y_res)
}
},
right = {
x_res <- if(identical(unattrib(m), seq_row(x))) x[-ixon] else .Call(C_subsetDT, x, m, seq_along(x)[-ixon], if(count) attr(m, "N.nomatch") else TRUE)
# if(length(ax[["row.names"]])) ax[["row.names"]] <- .set_row_names(length(m))
y_on <- y[iyon]
names(y_on) <- xon
if(keep.col.order) {
if(length(x_res)) add_vars(x_res, pos = ixon) <- y_on
else x_res <- y_on
c(x_res, y[-iyon])
} else {
keep.col.order <- 2L # has global effects !!
c(y_on, x_res, y[-iyon])
}
},
semi = { # = return rows in x that have matching values in y
anyna <- if(count) attr(m, "N.nomatch") > 0L else anyNA(m)
if(anyna) {
x_ind <- whichNA(m, invert = TRUE)
# rn <- ax[["row.names"]] # TODO: Works inside switch??
# if(length(rn)) ax[["row.names"]] <- if(is.numeric(rn) || is.null(rn) || rn[1L] == "1")
# .set_row_names(x_ind) else Csv(rn, x_ind)
.Call(C_subsetDT, x, x_ind, seq_along(x), FALSE)
} else x
},
# = return rows in x that have no matching values in y
anti = .Call(C_subsetDT, x, whichNA(m), seq_along(x), FALSE),
stop("Unknown join method: ", how)
)
# Join column and reordering
if(length(column)) {
if(is.list(column)) {
lev <- column[[2L]]
column <- column[[1L]]
x_name <- lev[[1L]]
y_name <- lev[[2L]]
matched <- lev[[3L]]
} else matched <- "matched"
# TODO: better?
# matched <- paste0(y_name, "_", y_name)
mc <- switch(how, left_setrn =,
left = structure(is.na(m) + 1L, levels = c(matched, x_name), class = c("factor", "na.included")),
right = structure(is.na(m) + 1L, levels = c(matched, y_name), class = c("factor", "na.included")),
full = structure(vec(list(is.na(m) + 1L, alloc(3L, fnrow(res)-length(m)))), levels = c(matched, x_name, y_name), class = c("factor", "na.included")),
inner =, semi = structure(alloc(1L, fnrow(res)), levels = matched, class = c("factor", "na.included")),
anti = structure(alloc(1L, fnrow(res)), levels = x_name, class = c("factor", "na.included")))
attr(mc, "on.cols") <- `names<-`(list(xon, `names<-`(on, NULL)), c(x_name, y_name))
mc_name <- if(is.character(column)) column else ".join"
if(keep.col.order == 1L) res[[mc_name]] <- mc else {
if(keep.col.order == 2L) ixon <- seq_along(ixon)
res <- c(res[ixon], `names<-`(list(mc), mc_name), res[-ixon])
}
} else if(!keep.col.order) res <- c(res[ixon], res[-ixon])
# Final steps
if(length(attr)) ax[[if(is.character(attr)) attr else "join.match"]] <- list(call = match.call(),
on.cols = list(x = xon, y = `names<-`(on, NULL)),
match = m) # TODO: sort merge join also report o?
if(sort && how == "full") res <- roworderv(res, cols = xon)
if(how != "left" && length(ax[["row.names"]])) ax[["row.names"]] <- .set_row_names(fnrow(res))
ax[["names"]] <- names(res)
.Call(C_setattributes, res, ax)
if(any(ax$class == "data.table")) return(alc(res))
return(res)
}
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