File: d3ClusterDendro.Rd

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r-cran-d3network 0.5.2.1-3
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 12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879808182838485868788899091929394 % Generated by roxygen2 (4.0.1): do not edit by hand \name{d3ClusterDendro} \alias{d3ClusterDendro} \title{Create a D3 JavaScript Cluster Dendrogram graphs.} \source{ Mike Bostock \url{http://bl.ocks.org/mbostock/4063570}. } \usage{ d3ClusterDendro(List, height = 2200, width = 900, heightCollapse = 0, widthCollapse = 0.5, fontsize = 10, linkColour = "#ccc", nodeColour = "#3182bd", textColour = "#3182bd", opacity = 0.8, diameter = 980, zoom = FALSE, parentElement = "body", standAlone = TRUE, file = NULL, iframe = FALSE, d3Script = "http://d3js.org/d3.v3.min.js") } \arguments{ \item{List}{a hierarchical list object with a root node and children.} \item{height}{numeric height for the network graph's frame area in pixels.} \item{width}{numeric width for the network graph's frame area in pixels.} \item{heightCollapse}{numeric proportion of the overall graph \code{height} to make the cluster dendrogram shorter by.} \item{widthCollapse}{numeric proportion of the overall graph \code{width} to make the cluster dendrogram narrower by.} \item{fontsize}{numeric font size in pixels for the node text labels.} \item{linkColour}{character string specifying the colour you want the link lines to be. Multiple formats supported (e.g. hexadecimal).} \item{nodeColour}{character string specifying the colour you want the node circles to be. Multiple formats supported (e.g. hexadecimal).} \item{textColour}{character string specifying the colour you want the text to be before they are clicked. Multiple formats supported (e.g. hexadecimal).} \item{opacity}{numeric value of the proportion opaque you would like the graph elements to be.} \item{diameter}{numeric diameter for the network in pixels.} \item{zoom}{logical, whether or not to enable the ability to use the mouse scroll-wheel to zoom in and out of the graph.} \item{parentElement}{character string specifying the parent element for the resulting svg network graph. This effectively allows the user to specify where on the html page the graph will be placed. By default the parent element is \code{body}.} \item{standAlone}{logical, whether or not to return a complete HTML document (with head and foot) or just the script.} \item{file}{a character string of the file name to save the resulting graph. If a file name is given a standalone webpage is created, i.e. with a header and footer. If \code{file = NULL} then result is returned to the console.} \item{iframe}{logical. If \code{iframe = TRUE} then the graph is saved to an external file in the working directory and an HTML \code{iframe} linking to the file is printed to the console. This is useful if you are using Slidify and many other HTML slideshow framworks and want to include the graph in the resulting page. If you set the knitr code chunk \code{results='asis'} then the graph will be rendered in the output. Usually, you can use \code{iframe = FALSE} if you are creating simple knitr Markdown or HTML pages. Note: you do not need to specify the file name if \code{iframe = TRUE}, however if you do, do not include the file path.} \item{d3Script}{a character string that allows you to specify the location of the d3.js script you would like to use. The default is \url{http://d3js.org/d3.v3.min.js}.} } \description{ Create a D3 JavaScript Cluster Dendrogram graphs. } \examples{ \dontrun{ # Download JSON data library(RCurl) URL <- "https://raw.github.com/christophergandrud/d3Network/master/JSONdata/flare.json" Flare <- getURL(URL) # Convert to list format Flare <- rjson::fromJSON(Flare) # Recreate Bostock example from http://bl.ocks.org/mbostock/4063570 d3ClusterDendro(List = Flare, file = "FlareCluster.html", zoom = TRUE, fontsize = 10, opacity = 0.9, widthCollapse = 0.8) } }