File: datatable-keys-fast-subset.R

package info (click to toggle)
r-cran-data.table 1.14.8%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 15,936 kB
  • sloc: ansic: 15,680; sh: 100; makefile: 6
file content (170 lines) | stat: -rw-r--r-- 6,346 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
## ---- echo = FALSE, message = FALSE---------------------------------------------------------------
require(data.table)
knitr::opts_chunk$set(
  comment = "#",
    error = FALSE,
     tidy = FALSE,
    cache = FALSE,
 collapse = TRUE)

## ----echo = FALSE---------------------------------------------------------------------------------
options(width = 100L)

## -------------------------------------------------------------------------------------------------
flights <- fread("flights14.csv")
head(flights)
dim(flights)

## -------------------------------------------------------------------------------------------------
set.seed(1L)
DF = data.frame(ID1 = sample(letters[1:2], 10, TRUE),
                ID2 = sample(1:3, 10, TRUE),
                val = sample(10),
                stringsAsFactors = FALSE,
                row.names = sample(LETTERS[1:10]))
DF

rownames(DF)

## -------------------------------------------------------------------------------------------------
DF["C", ]

## ----eval = FALSE---------------------------------------------------------------------------------
#  rownames(DF) = sample(LETTERS[1:5], 10, TRUE)
#  # Warning: non-unique values when setting 'row.names': 'C', 'D'
#  # Error in `.rowNamesDF<-`(x, value = value): duplicate 'row.names' are not allowed

## -------------------------------------------------------------------------------------------------
DT = as.data.table(DF)
DT

rownames(DT)

## -------------------------------------------------------------------------------------------------
setkey(flights, origin)
head(flights)

## alternatively we can provide character vectors to the function 'setkeyv()'
# setkeyv(flights, "origin") # useful to program with

## -------------------------------------------------------------------------------------------------
flights[.("JFK")]

## alternatively
# flights[J("JFK")] (or) 
# flights[list("JFK")]

## ----eval = FALSE---------------------------------------------------------------------------------
#  flights["JFK"]              ## same as flights[.("JFK")]

## ----eval = FALSE---------------------------------------------------------------------------------
#  flights[c("JFK", "LGA")]    ## same as flights[.(c("JFK", "LGA"))]

## -------------------------------------------------------------------------------------------------
key(flights)

## -------------------------------------------------------------------------------------------------
setkey(flights, origin, dest)
head(flights)

## or alternatively
# setkeyv(flights, c("origin", "dest")) # provide a character vector of column names

key(flights)

## -------------------------------------------------------------------------------------------------
flights[.("JFK", "MIA")]

## -------------------------------------------------------------------------------------------------
key(flights)

flights[.("JFK")] ## or in this case simply flights["JFK"], for convenience

## -------------------------------------------------------------------------------------------------
flights[.(unique(origin), "MIA")]

## -------------------------------------------------------------------------------------------------
key(flights)
flights[.("LGA", "TPA"), .(arr_delay)]

## ----eval = FALSE---------------------------------------------------------------------------------
#  flights[.("LGA", "TPA"), "arr_delay", with = FALSE]

## -------------------------------------------------------------------------------------------------
flights[.("LGA", "TPA"), .(arr_delay)][order(-arr_delay)]

## -------------------------------------------------------------------------------------------------
flights[.("LGA", "TPA"), max(arr_delay)]

## -------------------------------------------------------------------------------------------------
# get all 'hours' in flights
flights[, sort(unique(hour))]

## -------------------------------------------------------------------------------------------------
setkey(flights, hour)
key(flights)
flights[.(24), hour := 0L]
key(flights)

## -------------------------------------------------------------------------------------------------
flights[, sort(unique(hour))]

## -------------------------------------------------------------------------------------------------
setkey(flights, origin, dest)
key(flights)

## -------------------------------------------------------------------------------------------------
ans <- flights["JFK", max(dep_delay), keyby = month]
head(ans)
key(ans)

## -------------------------------------------------------------------------------------------------
flights[.("JFK", "MIA"), mult = "first"]

## -------------------------------------------------------------------------------------------------
flights[.(c("LGA", "JFK", "EWR"), "XNA"), mult = "last"]

## -------------------------------------------------------------------------------------------------
flights[.(c("LGA", "JFK", "EWR"), "XNA"), mult = "last", nomatch = NULL]

## ----eval = FALSE---------------------------------------------------------------------------------
#  # key by origin,dest columns
#  flights[.("JFK", "MIA")]

## ----eval = FALSE---------------------------------------------------------------------------------
#  flights[origin == "JFK" & dest == "MIA"]

## ----eval = FALSE---------------------------------------------------------------------------------
#  setkey(flights, NULL)
#  flights[origin == "JFK" & dest == "MIA"]

## -------------------------------------------------------------------------------------------------
set.seed(2L)
N = 2e7L
DT = data.table(x = sample(letters, N, TRUE),
                y = sample(1000L, N, TRUE),
                val = runif(N))
print(object.size(DT), units = "Mb")

## -------------------------------------------------------------------------------------------------
key(DT)
## (1) Usual way of subsetting - vector scan approach
t1 <- system.time(ans1 <- DT[x == "g" & y == 877L])
t1
head(ans1)
dim(ans1)

## -------------------------------------------------------------------------------------------------
setkeyv(DT, c("x", "y"))
key(DT)
## (2) Subsetting using keys
t2 <- system.time(ans2 <- DT[.("g", 877L)])
t2
head(ans2)
dim(ans2)

identical(ans1$val, ans2$val)

## ----eval = FALSE---------------------------------------------------------------------------------
#  1, 5, 10, 19, 22, 23, 30