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require(methods)
if (exists("test.data.table", .GlobalEnv, inherits=FALSE)) {
if ((tt<-compiler::enableJIT(-1))>0)
cat("This is dev mode and JIT is enabled (level ", tt, ") so there will be a brief pause around the first test.\n", sep="")
} else {
require(data.table)
test = data.table:::test
INT = data.table:::INT
colnamesInt = data.table:::colnamesInt
coerceFill = data.table:::coerceFill
# masked by which package?
# =================================
copy = data.table::copy # bit64; copy is used in this file, so this line is needed
setattr = data.table::setattr # bit ; setattr does not appear in this file, so not needed. Here in case that changes.
# use of copy and setattr within data.table's own code is not masked by other packages
# we only have to do this in test files because, like a user would, these test files run like a user
}
sugg = c(
"bit64",
"nanotime"
)
for (s in sugg) {
assign(paste0("test_",s), loaded<-suppressWarnings(suppressMessages(require(s, character.only=TRUE))))
if (!loaded) cat("\n**** Suggested package",s,"is not installed. Tests using it will be skipped.\n\n")
}
x = 1:10
x[c(1:2, 5:6, 9:10)] = NA
test(1.01, nafill(x, "locf"), INT(NA,NA,3,4,4,4,7,8,8,8))
test(1.02, nafill(x, "nocb"), INT(3,3,3,4,7,7,7,8,NA,NA))
test(1.03, nafill(x, fill=0L), INT(0,0,3,4,0,0,7,8,0,0))
test(1.04, nafill(x, fill=5), INT(5,5,3,4,5,5,7,8,5,5))
test(1.05, nafill(x, fill=NA_integer_), x)
test(1.06, nafill(x, fill=NA), x)
test(1.07, nafill(x, fill=NA_real_), x)
test(1.08, nafill(x, fill=Inf), x)
test(1.09, nafill(x, fill=NaN), x)
y = x/2
test(1.11, nafill(y, "locf"), c(NA,NA,3,4,4,4,7,8,8,8)/2)
test(1.12, nafill(y, "nocb"), c(3,3,3,4,7,7,7,8,NA,NA)/2)
test(1.13, nafill(y, fill=0L), c(0,0,3,4,0,0,7,8,0,0)/2)
test(1.14, nafill(y, fill=5/2), c(5,5,3,4,5,5,7,8,5,5)/2)
test(1.15, nafill(y, fill=NA_integer_), y)
test(1.16, nafill(y, fill=NA), y)
test(1.17, nafill(y, fill=NA_real_), y)
test(1.18, nafill(y, fill=Inf), c(Inf,Inf,3,4,Inf,Inf,7,8,Inf,Inf)/2)
test(1.19, nafill(y, fill=NaN), c(NaN,NaN,3,4,NaN,NaN,7,8,NaN,NaN)/2)
z = y
z[5L] = NaN
z[2L] = Inf
z[9L] = -Inf
test(1.21, nafill(z, "locf"), c(NA,Inf,3,4,4,4,7,8,-Inf,-Inf)/2)
test(1.22, nafill(z, "nocb"), c(Inf,Inf,3,4,7,7,7,8,-Inf,NA)/2)
dt = data.table(x, y, z)
test(1.31, nafill(dt, "locf"), unname(lapply(dt, nafill, "locf")))
test(1.32, nafill(dt, "nocb"), unname(lapply(dt, nafill, "nocb")))
test(1.33, nafill(dt, fill=0), unname(lapply(dt, nafill, fill=0)))
l = list(x, y[1:8], z[1:6])
test(1.41, nafill(l, "locf"), lapply(l, nafill, "locf"))
test(1.42, nafill(l, "nocb"), lapply(l, nafill, "nocb"))
test(1.43, nafill(l, fill=0), lapply(l, nafill, fill=0))
l = list(a=c(1:2,NA,4:5), b=as.Date(c(1:2,NA,4:5), origin="1970-01-01"), d=c(NA,2L,NA,4L,NA), e=as.Date(c(NA,2L,NA,4L,NA), origin="1970-01-01")) # Date retain class #3617
test(1.44, nafill(l, "locf"), list(c(1:2,2L,4:5), structure(c(1,2,2,4,5), class="Date"), c(NA,2L,2L,4L,4L), structure(c(NA,2,2,4,4), class="Date")))
test(1.45, nafill(l, "nocb"), list(c(1:2,4L,4:5), structure(c(1,2,4,4,5), class="Date"), c(2L,2L,4L,4L,NA), structure(c(2,2,4,4,NA), class="Date")))
test(1.46, nafill(l, fill=0), list(c(1:2,0L,4:5), structure(c(1,2,0,4,5), class="Date"), c(0L,2L,0L,4L,0L), structure(c(0,2,0,4,0), class="Date")))
test(1.47, nafill(l, fill=as.Date(0, origin="1970-01-01")), list(c(1:2,0L,4:5), structure(c(1,2,0,4,5), class="Date"), c(0L,2L,0L,4L,0L), structure(c(0,2,0,4,0), class="Date")))
test(1.48, nafill(l, fill=as.Date("2019-06-05")), list(c(1:2,18052L,4:5), structure(c(1,2,18052,4,5), class="Date"), c(18052L,2L,18052L,4L,18052L), structure(c(18052,2,18052,4,18052), class="Date")))
test(1.49, nafill(numeric()), numeric())
if (test_bit64) {
l = list(a=as.integer64(c(1:2,NA,4:5)), b=as.integer64(c(NA,2L,NA,4L,NA)))
test(1.61, lapply(nafill(l, "locf"), as.character), lapply(list(c(1:2,2L,4:5), c(NA,2L,2L,4L,4L)), as.character))
test(1.62, lapply(nafill(l, "nocb"), as.character), lapply(list(c(1:2,4L,4:5), c(2L,2L,4L,4L,NA)), as.character))
test(1.63, lapply(nafill(l, fill=0), as.character), lapply(list(c(1:2,0L,4:5), c(0L,2L,0L,4L,0L)), as.character))
test(1.64, lapply(nafill(l, fill=as.integer64(0)), as.character), lapply(list(c(1:2,0L,4:5), c(0L,2L,0L,4L,0L)), as.character))
test(1.65, lapply(nafill(l, fill=as.integer64("3000000000")), as.character), list(c("1","2","3000000000","4","5"), c("3000000000","2","3000000000","4","3000000000")))
l = lapply(l, `+`, as.integer64("3000000000"))
test(1.66, lapply(nafill(l, "locf"), as.character), list(c("3000000001","3000000002","3000000002","3000000004","3000000005"), c(NA_character_,"3000000002","3000000002","3000000004","3000000004")))
test(1.67, lapply(nafill(l, "nocb"), as.character), list(c("3000000001","3000000002","3000000004","3000000004","3000000005"), c("3000000002","3000000002","3000000004","3000000004",NA_character_)))
test(1.68, lapply(nafill(l, fill=as.integer64("3000000000")), as.character), list(c("3000000001","3000000002","3000000000","3000000004","3000000005"), c("3000000000","3000000002","3000000000","3000000004","3000000000")))
test(1.69, nafill(c(1L,2L,NA,4L), fill=as.integer64(3L)), 1:4)
test(1.70, nafill(c(1L,2L,NA,4L), fill=as.integer64(NA)), c(1:2,NA,4L))
test(1.71, nafill(c(1,2,NA,4), fill=as.integer64(3)), c(1,2,3,4))
test(1.72, nafill(c(1,2,NA,4), fill=as.integer64(NA)), c(1,2,NA,4))
test(1.73, nafill(as.integer64(c(1,2,NA,4)), fill=3), as.integer64(1:4))
test(1.74, nafill(as.integer64(c(1,2,NA,4)), fill=3L), as.integer64(1:4))
test(1.75, nafill(as.integer64(c(1,2,NA,4)), fill=NA_integer_), as.integer64(c(1:2,NA,4L)))
test(1.76, nafill(as.integer64(c(1,2,NA,4)), fill=NA_real_), as.integer64(c(1:2,NA,4L)))
test(1.77, nafill(as.integer64(c(1,2,NA,4)), fill=NA), as.integer64(c(1:2,NA,4L)))
}
if (test_nanotime) {
l = list(a=nanotime(c(1:2,NA,4:5)), b=nanotime(c(NA,2L,NA,4L,NA)))
test(1.91, lapply(nafill(l, "locf"), as.character), lapply(list(nanotime(c(1:2,2L,4:5)), nanotime(c(NA,2L,2L,4L,4L))), as.character))
test(1.92, lapply(nafill(l, "nocb"), as.character), lapply(list(nanotime(c(1:2,4L,4:5)), nanotime(c(2L,2L,4L,4L,NA))), as.character))
test(1.93, lapply(nafill(l, fill=0), as.character), lapply(list(nanotime(c(1:2,0L,4:5)), nanotime(c(0L,2L,0L,4L,0L))), as.character))
test(1.94, lapply(nafill(l, fill=nanotime(0)), as.character), lapply(list(nanotime(c(1:2,0L,4:5)), nanotime(c(0L,2L,0L,4L,0L))), as.character))
}
# setnafill
dt = data.table(V1=1:10, V2=10:1, V3=1:10/2)
dt[c(1L,4:5,9:10), V1:=NA][c(2:3, 5:6, 10L), V2:=NA][c(1:2, 5:6, 9:10), V3:=NA]
db = copy(dt)
test(2.01, {setnafill(dt, fill=0); dt}, as.data.table(nafill(db, fill=0)))
dt = copy(db)
test(2.02, {setnafill(dt, "locf"); dt}, as.data.table(nafill(db, "locf")))
dt = copy(db)
test(2.03, {setnafill(dt, "nocb"); dt}, as.data.table(nafill(db, "nocb")))
dt = copy(db)
test(2.04, {setnafill(dt, fill=0, cols=c("V2","V3")); dt}, db[, c(list(V1), nafill(.SD, fill=0)), .SDcols=c("V2","V3")])
dt = copy(db)
test(2.05, {setnafill(dt, "locf", cols=c("V2","V3")); dt}, db[, c(list(V1), nafill(.SD, "locf")), .SDcols=c("V2","V3")])
dt = copy(db)
test(2.06, {setnafill(dt, "nocb", cols=c("V2","V3")); dt}, db[, c(list(V1), nafill(.SD, "nocb")), .SDcols=c("V2","V3")])
db[, "V4" := c(letters[1:3],NA,letters[5:7],NA,letters[9:10])]
dt = copy(db)
test(2.07, {setnafill(dt, "locf", cols=c("V2","V3")); dt}, db[, c(list(V1), nafill(.SD, "locf"), list(V4)), .SDcols=c("V2","V3")])
l = list(a=c(1:2,NA,4:5), b=as.Date(c(1:2,NA,4:5), origin="1970-01-01"), d=c(NA,2L,NA,4L,NA), e=as.Date(c(NA,2L,NA,4L,NA), origin="1970-01-01")) # Date retain class #3617
setnafill(l, fill=as.Date("2019-06-05"))
test(2.08, unname(l), list(c(1:2,18052L,4:5), structure(c(1,2,18052,4,5), class="Date"), c(18052L,2L,18052L,4L,18052L), structure(c(18052,2,18052,4,18052), class="Date")))
# exceptions test coverage
x = 1:10
test(3.01, nafill(x, "locf", fill=0L), nafill(x, "locf"), warning="argument 'fill' ignored")
test(3.02, setnafill(list(copy(x)), "locf", fill=0L), setnafill(list(copy(x)), "locf"), warning="argument 'fill' ignored")
test(3.03, setnafill(x, "locf"), error="in-place update is supported only for list")
test(3.04, nafill(letters[1:5], fill=0), error="must be numeric type, or list/data.table")
test(3.05, setnafill(list(letters[1:5]), fill=0), error="must be numeric type, or list/data.table")
test(3.06, nafill(x, fill=1:2), error="fill must be a vector of length 1")
test(3.07, nafill(x, fill="asd"), error="fill argument must be numeric")
# colnamesInt helper
dt = data.table(a=1, b=2, d=3)
test(4.01, colnamesInt(dt, "a"), 1L)
test(4.02, colnamesInt(dt, 1L), 1L)
test(4.03, colnamesInt(dt, 1), 1L)
test(4.04, colnamesInt(dt, c("a","d")), c(1L, 3L))
test(4.05, colnamesInt(dt, c(1L, 3L)), c(1L, 3L))
test(4.06, colnamesInt(dt, c(1, 3)), c(1L, 3L))
test(4.07, colnamesInt(dt, c("a", "e")), error="specify non existing column*.*e")
test(4.08, colnamesInt(dt, c(1L, 4L)), error="specify non existing column*.*4")
test(4.09, colnamesInt(dt, c(1, 4)), error="specify non existing column*.*4")
test(4.10, colnamesInt(dt, c("a", NA)), error="specify non existing column*.*NA")
test(4.11, colnamesInt(dt, c(1L, NA)), error="specify non existing column")
test(4.12, colnamesInt(dt, c(1, NA)), error="specify non existing column")
test(4.13, colnamesInt(dt, c("a","d","a"), check_dups=TRUE), error="specify duplicated column")
test(4.14, colnamesInt(dt, c(1L, 3L, 1L), check_dups=TRUE), error="specify duplicated column")
test(4.15, colnamesInt(dt, c(1, 3, 1), check_dups=TRUE), error="specify duplicated column")
test(4.16, colnamesInt(dt, list("a")), error="must be character or numeric")
test(4.17, colnamesInt(dt, NA), error="must be character or numeric")
test(4.18, colnamesInt(dt, character()), integer())
test(4.19, colnamesInt(dt, numeric()), integer())
test(4.20, colnamesInt(dt, integer()), integer())
test(4.21, colnamesInt(dt, NULL), seq_along(dt))
test(4.22, colnamesInt("asd", 1), error="must be data.table compatible")
test(4.23, colnamesInt(dt, 1, check_dups="a"), error="check_dups")
names(dt) <- NULL
test(4.24, colnamesInt(dt, "a"), error="has no names")
# verbose
dt = data.table(a=c(1L, 2L, NA_integer_), b=c(1, 2, NA_real_))
old=options(datatable.verbose=TRUE)
test(5.01, nafill(dt, "locf"), output="nafillInteger: took.*nafillDouble: took.*nafillR.*took")
test(5.02, setnafill(dt, "locf"), output="nafillInteger: took.*nafillDouble: took.*nafillR.*took")
if (test_bit64) {
test(5.03, nafill(as.integer64(c(NA,2,NA,3)), "locf"), as.integer64(c(NA,2,2,3)), output="nafillInteger64: took.*nafillR.*took")
}
options(old)
# coerceFill
if (test_bit64) {
test(6.01, coerceFill(1:2), error="fill argument must be length 1")
test(6.02, coerceFill("a"), error="fill argument must be numeric")
test(6.11, identical(coerceFill(NA), list(NA_integer_, NA_real_, as.integer64(NA))))
test(6.21, identical(coerceFill(3L), list(3L, 3, as.integer64(3))))
test(6.22, identical(coerceFill(0L), list(0L, 0, as.integer64(0))))
test(6.23, identical(coerceFill(NA_integer_), list(NA_integer_, NA_real_, as.integer64(NA))))
test(6.31, identical(coerceFill(as.integer64(3)), list(3L, 3, as.integer64(3))))
test(6.32, identical(coerceFill(as.integer64(3000000003)), list(NA_integer_, 3000000003, as.integer64("3000000003"))))
test(6.33, identical(coerceFill(as.integer64(0)), list(0L, 0, as.integer64(0))))
test(6.34, identical(coerceFill(as.integer64(NA)), list(NA_integer_, NA_real_, as.integer64(NA))))
test(6.41, identical(coerceFill(3), list(3L, 3, as.integer64(3))))
test(6.42, identical(coerceFill(0), list(0L, 0, as.integer64(0))))
test(6.43, identical(coerceFill(NA_real_), list(NA_integer_, NA_real_, as.integer64(NA))))
test(6.44, identical(coerceFill(NaN), list(NA_integer_, NaN, as.integer64(NA))))
test(6.45, identical(coerceFill(Inf), list(NA_integer_, Inf, as.integer64(NA))))
test(6.46, identical(coerceFill(-Inf), list(NA_integer_, -Inf, as.integer64(NA))))
test(6.47, identical(coerceFill(-(2^62)), list(NA_integer_, -(2^62), as.integer64("-4611686018427387904"))))
test(6.48, identical(coerceFill(-(2^64)), list(NA_integer_, -(2^64), as.integer64(NA))))
test(6.49, identical(coerceFill(x<-as.integer64(-2147483647)), list(-2147483647L, -2147483647, x)))
test(6.50, identical(coerceFill(x<-as.integer64(-2147483648)), list(NA_integer_, -2147483648, x)))
test(6.51, identical(coerceFill(x<-as.integer64(-2147483649)), list(NA_integer_, -2147483649, x)))
test(6.52, identical(coerceFill(-2147483647), list(-2147483647L, -2147483647, as.integer64("-2147483647"))))
test(6.53, identical(coerceFill(-2147483648), list(NA_integer_, -2147483648, as.integer64("-2147483648"))))
test(6.54, identical(coerceFill(-2147483649), list(NA_integer_, -2147483649, as.integer64("-2147483649"))))
}
# nan argument to treat NaN as NA in nafill, #4020
x = c(-1, NA, NaN, 0, 1, 2)
ans1 = c(-1, 0, 0, 0:2)
ans2 = c(-1, 0, NaN, 0:2)
DT = data.table(a=x, b=x)
test(7.01, nafill(x, fill=0), ans1)
test(7.02, nafill(x, fill=0, nan=NaN), ans2)
test(7.03, nafill(x, 'locf'), c(-1, -1, -1, 0:2))
test(7.04, nafill(x, 'locf', nan=NaN), c(-1, -1, NaN, 0:2))
test(7.05, nafill(x, 'nocb'), ans1)
test(7.06, nafill(x, 'nocb', nan=NaN), c(-1, NaN, NaN, 0:2))
test(7.07, setnafill(DT, fill=0, cols=1L), copy(DT)[ , a := ans1])
test(7.08, setnafill(DT, fill=0, nan=NaN), copy(DT)[ , c('a', 'b') := .(ans1, ans2)])
test(7.09, nafill(x, fill=0, nan=c(NA, NaN)), error="Argument 'nan' must be length 1")
test(7.10, nafill(x, fill=0, nan=Inf), error="Argument 'nan' must be NA or NaN")
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