1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456
|
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="author" content="Jim Hester, Hadley Wickham" />
<meta name="date" content="2025-10-01" />
<title>Devtools dependencies</title>
<script>// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
// be compatible with the behavior of Pandoc < 2.8).
document.addEventListener('DOMContentLoaded', function(e) {
var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
var i, h, a;
for (i = 0; i < hs.length; i++) {
h = hs[i];
if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
a = h.attributes;
while (a.length > 0) h.removeAttribute(a[0].name);
}
});
</script>
<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<style type="text/css">
code {
white-space: pre;
}
.sourceCode {
overflow: visible;
}
</style>
<style type="text/css" data-origin="pandoc">
html { -webkit-text-size-adjust: 100%; }
pre > code.sourceCode { white-space: pre; position: relative; }
pre > code.sourceCode > span { display: inline-block; line-height: 1.25; }
pre > code.sourceCode > span:empty { height: 1.2em; }
.sourceCode { overflow: visible; }
code.sourceCode > span { color: inherit; text-decoration: inherit; }
div.sourceCode { margin: 1em 0; }
pre.sourceCode { margin: 0; }
@media screen {
div.sourceCode { overflow: auto; }
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
pre.numberSource code > span
{ position: relative; left: -4em; counter-increment: source-line; }
pre.numberSource code > span > a:first-child::before
{ content: counter(source-line);
position: relative; left: -1em; text-align: right; vertical-align: baseline;
border: none; display: inline-block;
-webkit-touch-callout: none; -webkit-user-select: none;
-khtml-user-select: none; -moz-user-select: none;
-ms-user-select: none; user-select: none;
padding: 0 4px; width: 4em;
color: #aaaaaa;
}
pre.numberSource { margin-left: 3em; border-left: 1px solid #aaaaaa; padding-left: 4px; }
div.sourceCode
{ }
@media screen {
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
}
code span.al { color: #ff0000; font-weight: bold; }
code span.an { color: #60a0b0; font-weight: bold; font-style: italic; }
code span.at { color: #7d9029; }
code span.bn { color: #40a070; }
code span.bu { color: #008000; }
code span.cf { color: #007020; font-weight: bold; }
code span.ch { color: #4070a0; }
code span.cn { color: #880000; }
code span.co { color: #60a0b0; font-style: italic; }
code span.cv { color: #60a0b0; font-weight: bold; font-style: italic; }
code span.do { color: #ba2121; font-style: italic; }
code span.dt { color: #902000; }
code span.dv { color: #40a070; }
code span.er { color: #ff0000; font-weight: bold; }
code span.ex { }
code span.fl { color: #40a070; }
code span.fu { color: #06287e; }
code span.im { color: #008000; font-weight: bold; }
code span.in { color: #60a0b0; font-weight: bold; font-style: italic; }
code span.kw { color: #007020; font-weight: bold; }
code span.op { color: #666666; }
code span.ot { color: #007020; }
code span.pp { color: #bc7a00; }
code span.sc { color: #4070a0; }
code span.ss { color: #bb6688; }
code span.st { color: #4070a0; }
code span.va { color: #19177c; }
code span.vs { color: #4070a0; }
code span.wa { color: #60a0b0; font-weight: bold; font-style: italic; }
</style>
<script>
// apply pandoc div.sourceCode style to pre.sourceCode instead
(function() {
var sheets = document.styleSheets;
for (var i = 0; i < sheets.length; i++) {
if (sheets[i].ownerNode.dataset["origin"] !== "pandoc") continue;
try { var rules = sheets[i].cssRules; } catch (e) { continue; }
var j = 0;
while (j < rules.length) {
var rule = rules[j];
// check if there is a div.sourceCode rule
if (rule.type !== rule.STYLE_RULE || rule.selectorText !== "div.sourceCode") {
j++;
continue;
}
var style = rule.style.cssText;
// check if color or background-color is set
if (rule.style.color === '' && rule.style.backgroundColor === '') {
j++;
continue;
}
// replace div.sourceCode by a pre.sourceCode rule
sheets[i].deleteRule(j);
sheets[i].insertRule('pre.sourceCode{' + style + '}', j);
}
}
})();
</script>
<style type="text/css">body {
background-color: #fff;
margin: 1em auto;
max-width: 700px;
overflow: visible;
padding-left: 2em;
padding-right: 2em;
font-family: "Open Sans", "Helvetica Neue", Helvetica, Arial, sans-serif;
font-size: 14px;
line-height: 1.35;
}
#TOC {
clear: both;
margin: 0 0 10px 10px;
padding: 4px;
width: 400px;
border: 1px solid #CCCCCC;
border-radius: 5px;
background-color: #f6f6f6;
font-size: 13px;
line-height: 1.3;
}
#TOC .toctitle {
font-weight: bold;
font-size: 15px;
margin-left: 5px;
}
#TOC ul {
padding-left: 40px;
margin-left: -1.5em;
margin-top: 5px;
margin-bottom: 5px;
}
#TOC ul ul {
margin-left: -2em;
}
#TOC li {
line-height: 16px;
}
table {
margin: 1em auto;
border-width: 1px;
border-color: #DDDDDD;
border-style: outset;
border-collapse: collapse;
}
table th {
border-width: 2px;
padding: 5px;
border-style: inset;
}
table td {
border-width: 1px;
border-style: inset;
line-height: 18px;
padding: 5px 5px;
}
table, table th, table td {
border-left-style: none;
border-right-style: none;
}
table thead, table tr.even {
background-color: #f7f7f7;
}
p {
margin: 0.5em 0;
}
blockquote {
background-color: #f6f6f6;
padding: 0.25em 0.75em;
}
hr {
border-style: solid;
border: none;
border-top: 1px solid #777;
margin: 28px 0;
}
dl {
margin-left: 0;
}
dl dd {
margin-bottom: 13px;
margin-left: 13px;
}
dl dt {
font-weight: bold;
}
ul {
margin-top: 0;
}
ul li {
list-style: circle outside;
}
ul ul {
margin-bottom: 0;
}
pre, code {
background-color: #f7f7f7;
border-radius: 3px;
color: #333;
white-space: pre-wrap;
}
pre {
border-radius: 3px;
margin: 5px 0px 10px 0px;
padding: 10px;
}
pre:not([class]) {
background-color: #f7f7f7;
}
code {
font-family: Consolas, Monaco, 'Courier New', monospace;
font-size: 85%;
}
p > code, li > code {
padding: 2px 0px;
}
div.figure {
text-align: center;
}
img {
background-color: #FFFFFF;
padding: 2px;
border: 1px solid #DDDDDD;
border-radius: 3px;
border: 1px solid #CCCCCC;
margin: 0 5px;
}
h1 {
margin-top: 0;
font-size: 35px;
line-height: 40px;
}
h2 {
border-bottom: 4px solid #f7f7f7;
padding-top: 10px;
padding-bottom: 2px;
font-size: 145%;
}
h3 {
border-bottom: 2px solid #f7f7f7;
padding-top: 10px;
font-size: 120%;
}
h4 {
border-bottom: 1px solid #f7f7f7;
margin-left: 8px;
font-size: 105%;
}
h5, h6 {
border-bottom: 1px solid #ccc;
font-size: 105%;
}
a {
color: #0033dd;
text-decoration: none;
}
a:hover {
color: #6666ff; }
a:visited {
color: #800080; }
a:visited:hover {
color: #BB00BB; }
a[href^="http:"] {
text-decoration: underline; }
a[href^="https:"] {
text-decoration: underline; }
code > span.kw { color: #555; font-weight: bold; }
code > span.dt { color: #902000; }
code > span.dv { color: #40a070; }
code > span.bn { color: #d14; }
code > span.fl { color: #d14; }
code > span.ch { color: #d14; }
code > span.st { color: #d14; }
code > span.co { color: #888888; font-style: italic; }
code > span.ot { color: #007020; }
code > span.al { color: #ff0000; font-weight: bold; }
code > span.fu { color: #900; font-weight: bold; }
code > span.er { color: #a61717; background-color: #e3d2d2; }
</style>
</head>
<body>
<h1 class="title toc-ignore">Devtools dependencies</h1>
<h4 class="author">Jim Hester, Hadley Wickham</h4>
<h4 class="date">2025-10-01</h4>
<div id="package-remotes" class="section level1">
<h1>Package remotes</h1>
<p>Devtools version 1.9 supports package dependency installation for
packages not yet in a standard package repository such as <a href="https://cran.r-project.org">CRAN</a> or <a href="https://bioconductor.org/">Bioconductor</a>.</p>
<p>You can mark any regular dependency defined in the
<code>Depends</code>, <code>Imports</code>, <code>Suggests</code> or
<code>Enhances</code> fields as being installed from a remote location
by adding the remote location to <code>Remotes</code> in your
<code>DESCRIPTION</code> file. This will cause devtools to download and
install them prior to installing your package (so they won’t be
installed from CRAN).</p>
<p>The remote dependencies specified in <code>Remotes</code> should be
described in the following form.</p>
<pre><code>Remotes: [type::]<Repository>, [type2::]<Repository2></code></pre>
<p>The <code>type</code> is an optional parameter. If the type is
missing the default is to install from GitHub. Additional remote
dependencies should be separated by commas, just like normal
dependencies elsewhere in the <code>DESCRIPTION</code> file.</p>
<p>It is important to remember that you <strong>must always declare the
dependency in the usual way</strong>, i.e. include it in
<code>Depends</code>, <code>Imports</code>, <code>Suggests</code> or
<code>Enhances</code>. The <code>Remotes</code> field only provides
instructions on where to install the dependency from. In this example
<code>DESCRIPTION</code> file, note how rlang appears in
<code>Imports</code> and in <code>Remotes</code>:</p>
<pre><code>Package: xyz
Title: What the Package Does (One Line, Title Case)
Version: 0.0.0.9000
Authors@R:
person(given = "First",
family = "Last",
role = c("aut", "cre"),
email = "first.last@example.com")
Description: What the package does (one paragraph).
License: MIT + file LICENSE
Imports:
rlang
Remotes:
r-lib/rlang</code></pre>
<div id="github" class="section level3">
<h3>GitHub</h3>
<p>Because GitHub is the most commonly used unofficial package
distribution in R, it’s the default:</p>
<div class="sourceCode" id="cb3"><pre class="sourceCode yaml"><code class="sourceCode yaml"><span id="cb3-1"><a href="#cb3-1" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> hadley/testthat</span></span></code></pre></div>
<p>You can also specify a specific hash, tag, or pull request (using the
same syntax as <code>install_github()</code> if you want a particular
commit. Otherwise the latest commit on the HEAD of the branch is
used.</p>
<div class="sourceCode" id="cb4"><pre class="sourceCode yaml"><code class="sourceCode yaml"><span id="cb4-1"><a href="#cb4-1" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> hadley/httr@v0.4,</span></span>
<span id="cb4-2"><a href="#cb4-2" tabindex="-1"></a><span class="at"> klutometis/roxygen</span><span class="co">#142,</span></span>
<span id="cb4-3"><a href="#cb4-3" tabindex="-1"></a><span class="at"> hadley/testthat@c67018fa4970</span></span></code></pre></div>
<p>A type of <code>github</code> can be specified, but is not
required</p>
<div class="sourceCode" id="cb5"><pre class="sourceCode yaml"><code class="sourceCode yaml"><span id="cb5-1"><a href="#cb5-1" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> github::hadley/ggplot2</span></span></code></pre></div>
</div>
<div id="other-sources" class="section level3">
<h3>Other sources</h3>
<p>All of the currently supported install sources are available, see the
‘See Also’ section in <code>?install</code> for a complete list.</p>
<div class="sourceCode" id="cb6"><pre class="sourceCode yaml"><code class="sourceCode yaml"><span id="cb6-1"><a href="#cb6-1" tabindex="-1"></a><span class="co"># GitLab</span></span>
<span id="cb6-2"><a href="#cb6-2" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> gitlab::jimhester/covr</span></span>
<span id="cb6-3"><a href="#cb6-3" tabindex="-1"></a></span>
<span id="cb6-4"><a href="#cb6-4" tabindex="-1"></a><span class="co"># Git</span></span>
<span id="cb6-5"><a href="#cb6-5" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> git::git@bitbucket.org:djnavarro/lsr.git</span></span>
<span id="cb6-6"><a href="#cb6-6" tabindex="-1"></a></span>
<span id="cb6-7"><a href="#cb6-7" tabindex="-1"></a><span class="co"># Bitbucket</span></span>
<span id="cb6-8"><a href="#cb6-8" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> bitbucket::sulab/mygene.r@default, djnavarro/lsr</span></span>
<span id="cb6-9"><a href="#cb6-9" tabindex="-1"></a></span>
<span id="cb6-10"><a href="#cb6-10" tabindex="-1"></a><span class="co"># Bioconductor</span></span>
<span id="cb6-11"><a href="#cb6-11" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> bioc::3.3/SummarizedExperiment</span><span class="co">#117513, bioc::release/Biobase</span></span>
<span id="cb6-12"><a href="#cb6-12" tabindex="-1"></a></span>
<span id="cb6-13"><a href="#cb6-13" tabindex="-1"></a><span class="co"># SVN</span></span>
<span id="cb6-14"><a href="#cb6-14" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> svn::https://github.com/tidyverse/stringr</span></span>
<span id="cb6-15"><a href="#cb6-15" tabindex="-1"></a></span>
<span id="cb6-16"><a href="#cb6-16" tabindex="-1"></a><span class="co"># URL</span></span>
<span id="cb6-17"><a href="#cb6-17" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> url::https://github.com/tidyverse/stringr/archive/main.zip</span></span>
<span id="cb6-18"><a href="#cb6-18" tabindex="-1"></a></span>
<span id="cb6-19"><a href="#cb6-19" tabindex="-1"></a><span class="co"># Local</span></span>
<span id="cb6-20"><a href="#cb6-20" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> local::/pkgs/testthat</span></span>
<span id="cb6-21"><a href="#cb6-21" tabindex="-1"></a></span>
<span id="cb6-22"><a href="#cb6-22" tabindex="-1"></a><span class="co"># Gitorious</span></span>
<span id="cb6-23"><a href="#cb6-23" tabindex="-1"></a><span class="fu">Remotes</span><span class="kw">:</span><span class="at"> gitorious::r-mpc-package/r-mpc-package</span></span></code></pre></div>
</div>
<div id="cran-submission" class="section level3">
<h3>CRAN submission</h3>
<p>When you submit your package to CRAN, all of its dependencies must
also be available on CRAN. For this reason, <code>release()</code> will
warn you if you try to release a package with a <code>Remotes</code>
field.</p>
</div>
</div>
<!-- code folding -->
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>
|