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#' Create a random islands graph with edges between the islands
#'
#' @description
#'
#' To an existing graph object, add several Erdos-Renyi random graphs (the
#' islands) using a common set of parameters, connected together by a fixed
#' number of edges.
#'
#' @inheritParams node_edge_aes_data
#' @inheritParams render_graph
#' @param n_islands The number of islands in the generated graph.
#' @param island_size The size of the islands in the generated graph.
#' @param p The probability of there being edges between the islands.
#' @param edges_between The number of edges between islands.
#' @param type An optional string that describes the entity type for all the
#' nodes to be added.
#' @param label A logical value where setting to `TRUE` ascribes node IDs to the
#' label and `FALSE` yields a blank label.
#' @param rel An optional string for providing a relationship label to all edges
#' to be added.
#' @param set_seed Supplying a value sets a random seed of the
#' `Mersenne-Twister` implementation.
#'
#' @examples
#' # Create a graph of islands
#' islands_graph <-
#' create_graph() %>%
#' add_islands_graph(
#' n_islands = 4,
#' island_size = 10,
#' p = 0.5,
#' edges_between = 1,
#' set_seed = 23)
#'
#' # Get a count of nodes
#' islands_graph %>% count_nodes()
#'
#' # Get a count of edges
#' islands_graph %>% count_edges()
#'
#' @export
add_islands_graph <- function(
graph,
n_islands,
island_size,
p,
edges_between,
type = NULL,
label = TRUE,
rel = NULL,
node_aes = NULL,
edge_aes = NULL,
node_data = NULL,
edge_data = NULL,
set_seed = NULL
) {
# Get the time of function start
time_function_start <- Sys.time()
# Validation: Graph object is valid
check_graph_valid(graph)
# If a seed value is supplied, set a seed
if (!is.null(set_seed)) {
set.seed(set_seed, kind = "Mersenne-Twister")
}
# Get the number of nodes ever created for
# this graph
nodes_created <- graph$last_node
# Get the number of edges ever created for
# this graph
edges_created <- graph$last_edge
# Get the graph's global attributes
global_attrs <- graph$global_attrs
# Get the graph's log
graph_log <- graph$graph_log
# Get the graph's info
graph_info <- graph$graph_info
# Create the graph to be added
sample_islands_graph <-
igraph::sample_islands(
islands.n = n_islands,
islands.size = island_size,
islands.pin = p,
n.inter = edges_between)
sample_islands_graph <- from_igraph(sample_islands_graph)
# Add in a static `type` value for all new nodes
if (!is.null(type)) {
sample_islands_graph$nodes_df$type <- as.character(type[1])
}
# Add in a static `rel` value for all new nodes
if (!is.null(rel)) {
sample_islands_graph$edges_df$rel <- as.character(rel[1])
}
# If `label` is requested, use the node ID to
# create a unique label for all new nodes
if (label) {
sample_islands_graph$nodes_df$label <-
sample_islands_graph$nodes_df$id %>% as.character()
}
n_nodes <- nrow(sample_islands_graph$nodes_df)
n_edges <- nrow(sample_islands_graph$edges_df)
# Collect node aesthetic attributes
if (!is.null(node_aes)) {
node_aes_tbl <- dplyr::as_tibble(node_aes)
if (nrow(node_aes_tbl) < nrow(sample_islands_graph$nodes_df)) {
node_aes$index__ <- seq_len(nrow(sample_islands_graph$nodes_df))
node_aes_tbl <-
dplyr::as_tibble(node_aes) %>%
dplyr::select(-"index__")
}
if ("id" %in% colnames(node_aes_tbl)) {
node_aes_tbl$id <- NULL
}
}
# Collect node data attributes
if (!is.null(node_data)) {
node_data_tbl <- dplyr::as_tibble(node_data)
if (nrow(node_data_tbl) < nrow(sample_islands_graph$nodes_df)) {
node_data$index__ <- seq_len(nrow(sample_islands_graph$nodes_df))
node_data_tbl <-
dplyr::as_tibble(node_data) %>%
dplyr::select(-"index__")
}
if ("id" %in% colnames(node_data_tbl)) {
node_data_tbl$id <- NULL
}
}
# Collect edge aesthetic attributes
if (!is.null(edge_aes)) {
edge_aes_tbl <- dplyr::as_tibble(edge_aes)
if (nrow(edge_aes_tbl) < nrow(sample_islands_graph$edges_df)) {
edge_aes$index__ <- seq_len(nrow(sample_islands_graph$edges_df))
edge_aes_tbl <-
dplyr::as_tibble(edge_aes) %>%
dplyr::select(-"index__")
}
if ("id" %in% colnames(edge_aes_tbl)) {
edge_aes_tbl$id <- NULL
}
}
# Collect edge data attributes
if (!is.null(edge_data)) {
edge_data_tbl <- dplyr::as_tibble(edge_data)
if (nrow(edge_data_tbl) < nrow(sample_islands_graph$edges_df)) {
edge_data$index__ <- seq_len(nrow(sample_islands_graph$edges_df))
edge_data_tbl <-
dplyr::as_tibble(edge_data) %>%
dplyr::select(-"index__")
}
if ("id" %in% colnames(edge_data_tbl)) {
edge_data_tbl$id <- NULL
}
}
# Add node aesthetics if available
if (exists("node_aes_tbl")) {
sample_islands_graph$nodes_df <-
sample_islands_graph$nodes_df %>%
dplyr::bind_cols(node_aes_tbl)
}
# Add node data if available
if (exists("node_data_tbl")) {
sample_islands_graph$nodes_df <-
sample_islands_graph$nodes_df %>%
dplyr::bind_cols(node_data_tbl)
}
# Add edge aesthetics if available
if (exists("edge_aes_tbl")) {
sample_islands_graph$edges_df <-
sample_islands_graph$edges_df %>%
dplyr::bind_cols(edge_aes_tbl)
}
# Add edge data if available
if (exists("edge_data_tbl")) {
sample_islands_graph$edges_df <-
sample_islands_graph$edges_df %>%
dplyr::bind_cols(edge_data_tbl)
}
# If the input graph is not empty, combine graphs
# using the `combine_graphs()` function
if (is_graph_empty(graph)) {
graph <- sample_islands_graph
} else {
graph <- combine_graphs(graph, sample_islands_graph)
}
# Update the `last_node` counter
graph$last_node <- nodes_created + n_nodes
# Update the `last_edge` counter
graph$last_edge <- edges_created + n_edges
# Get the name of the function
fcn_name <- get_calling_fcn()
# Update the `graph_log` df with an action
graph_log <-
add_action_to_log(
graph_log = graph_log,
version_id = nrow(graph_log) + 1L,
function_used = fcn_name,
time_modified = time_function_start,
duration = graph_function_duration(time_function_start),
nodes = nrow(graph$nodes_df),
edges = nrow(graph$edges_df),
d_n = n_nodes,
d_e = n_edges)
graph$global_attrs <- global_attrs
graph$graph_log <- graph_log
graph$graph_info <- graph_info
# Perform graph actions, if any are available
if (nrow(graph$graph_actions) > 0) {
graph <-
trigger_graph_actions(graph)
}
# Write graph backup if the option is set
if (graph$graph_info$write_backups) {
save_graph_as_rds(graph = graph)
}
graph
}
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