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# eaf 2.5.2
* Use gsl from Rtools >= 42 on Windows (contributed by @kalibera).
# eaf 2.5.1
* Fix Clang warning.
# eaf 2.5
* The argument `to.range` of `normalise()` has been renamed to `to_range`.
* Silence some warnings with GCC 12.
* Replace dots in function names with underscore (`_`) to silence CRAN Note.
# eaf 2.4
* If the installation cannot find the Gnu Scientific Library, it gives hints on
how to install it on various operating systems.
* `pdf_crop()` can optionally embed fonts.
* Fix calculation of `ideal` in `largest_eafdiff()`.
* Fix `configure` script to use the same compiler and flags as R.
# eaf 2.3
* `eafplot()` now returns the attainment surfaces computed invisibly.
* New functions `pdf_crop()`, `write_datasets()`, `attsurf2df()`.
* Fix bug that made polygons extend beyond their boundaries affecting
`eafdiff()` and `eafdiffplot()`.
# eaf 2.2
* `col` argument of `eafdiffplot()` may be a colormap function.
# eaf 2.1
* Improve documentation of `igd()`.
* Fix errors with single-point attainment surfaces.
* Fix bug in `eafplot.list()`.
# eaf 2.0
* `read_datasets()` is able to read files compressed with `xz`.
* `eafs()` and `eafdiff()` and the plotting functions using them now consume
slightly less memory.
* New function `whv_hype()` to estimate weighted hypervolume using Monte-Carlo
sampling.
* New functions `total_whv_rect()` and `whv_rect()` to compute weighted
hypervolume with rectangular weighted regions.
* New functions `largest_eafdiff()`, `choose_eafdiffplot()` and
`choose_eafdiff()` for converting EAF differences into weighted regions for
calculating the weighted hypervolume.
* New function `avg_hausdorff_dist()` for computing the averaged Hausdorff distance.
# eaf 1.9-1
* Fixes to Makefiles for non-GCC compilers and parallel build setups.
# eaf 1.9
* Compute Vorob'ev threshold, expectation and deviation. Plots of the symmetric
deviation. (Mickael Binois)
* Non-integer EAF percentiles are computed correctly.
* Various aesthetic improvements in `eafplot()` and `eafdiffplot()`.
* Functions for computing hypervolume, hypervolume contributions, epsilon
metric, IGD+, filter dominated points, and fast normalisation of ranges.
* Command-line tools for computing the above are installed in `system.file(package="eaf", "bin/")`.
* Online documentation available at: http://lopez-ibanez.eu/eaftools
* New `read_datasets()` replaces deprecated `read.data.sets()`.
New parameter `text` of `read_datasets()`.
* New `eafdiff()` function for computing EAF differences.
* The `data.frame` method for `eafplot` has been removed. It had unexpected
behavior and the default method handles `data.frame` already.
* Python script to compute EAF differences installed at `system.file(package="eaf", "scripts/eafdiff.py")`.
# eaf 1.8
* Development version moved to GitHub: https://github.com/MLopez-Ibanez/eaf
* Remove leading zeros from version number.
* New parameters `left.panel.last` and `right.panel.last` of `eafdiffplot()`.
* Export and document function `eafs()` to compute EAFs.
* `eafdiff.pl`: Handle `--colors=`, `--intervals=`.
* Fix crash in `eafplot()` if `sets` is a vector of strings.
* Reset layout in `eafdiffplot()`.
* Compute eaf for 3D.
* Added testthat testing framework.
* The documentation is now generated with Roxygen2.
* Entry points to C code are now properly registered.
# eaf 1.07
* Silence CRAN warning for GNU extensions in Makefiles in `inst/scripts/eaf/Makefile`.
# eaf 1.06
* Fix bug when automatically generating a legend in `eafplot()` with the
formula interface (Thanks to Bernd Bischl for reporting this)
* Improve handling of various newline character formats.
* Reduce memory consumption (up to four times less memory).
* `eafdiff.pl`: Mention option `--legendpos=none` to hide the legend.
* `eafplot.pl`: Add options `--maximise` and `--xmaximise` and `--colors=`.
Fix bug with `--area`.
* `eafplot.default()` now requires two colors when `type=="area"` and a
palette is interpolated between these two colors for all the
different levels plotted (Thanks to Alexandre Quemy for the suggestion).
# eaf 1.05
* Implement `type = "area"` for `eafdiffplot()`. This is now the default.
The idea for the algorithm to compute the areas was provided by Carlos M. Fonseca. The implementation uses R polygons, which some PDF viewers may have trouble rendering correctly (See https://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-are-there-unwanted-borders).
Plots will look correct when printed. To get the previous behavior use `eafdiffplot(, type = "point")`.
* Attempt to deal with DOS/Unix newlines correctly.
* `eafplot.pl`: Cleanups.
(`--single, --output, --legend`): New options.
Default to PDF.
* `eafdiff.pl`: Many cleanups.
EAF diff with `type="area"` is the default now.
Parameter `--cex` replaced by `--scale`.
Do not require `ps2eps`.
Handle `--obj1=` better. Crop pdf before converting to `PNG`.
(`--noattsurfs`): New option.
(`--output-dir,--output`): New options.
(`--eps`): New option. PDF is the default now.
* Force `eafdiffplot()` to use a square plotting region.
* `read.data.sets()` normalizes paths, thus it works with files such as `~/file`.
* Function `eafdiffplot()` handles `percentiles=NA` and grand.lines
parameter.
* Fix bug with ranges and `maximise=TRUE` in `eafdiffplot()`.
* Fix `points.steps` to work correctly for all values of `maximise`.
* Fix bug in `eafdiffplot(..., maximise=c(TRUE,FALSE), full.eaf = TRUE)`
* Fix `"log"` parameter in `eafplot()` and `eafdiffplot()`.
* Avoid that `eafplot.formula` modifies global options.
* Add `'axes'` parameter to `eafplot()`.
* To avoid confusion, the arguments `'xaxis.side'` and `'yaxis.side'` of
`eafplot()` can only take values `c("below", "above")` and `c("left",
"right")`, respectively.
* Add missing Makefile in `inst/scripts/eaf/`.
# eaf 1.04
* Fix issues with only one point in the EAF.
# eaf 1.03
* Handle maximise argument in `eafdiffplot()` and `--maximise` command-line
option in `eafdiff.pl`
* `R/calls.R` (`eafplot.data.frame`): Fix problem with main parameter.
# eaf 1.00
* Initial release available in CRAN.
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