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#!/bin/bash
######################################################################
# A batchtools launch script template for Slurm
#
# Author: Henrik Bengtsson
######################################################################
#SBATCH --job-name=<%= job.name %>
#SBATCH --output=<%= log.file %>
#SBATCH --nodes=1
#SBATCH --time=00:05:00
## Resources needed:
<% if (length(resources) > 0) {
opts <- unlist(resources, use.names = TRUE)
opts <- sprintf("--%s=%s", names(opts), opts)
opts <- paste(opts, collapse = " ") %>
#SBATCH <%= opts %>
<% } %>
## Launch R and evaluated the batchtools R job
Rscript -e 'batchtools::doJobCollection("<%= uri %>")'
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