a43c117b35b550e725c6db35497750fd *ChangeLog
92466ebb66a04df52623b0a1e36d23ac *DESCRIPTION
b40eaf1640f93040fda013f63cab4de7 *NAMESPACE
95d5d4859f5f15ce187a8f93e2219b9f *R/GASurv.R
cce0d87eecb2d145c3299571a590b53a *R/GenABEL.R
16e6b5bef4ad5fa6e80b490296cb492b *R/HWE.show.R
4135d78b46d5820cf1e79fd09f88d524 *R/PGC.R
bea59db554247d12df01e679b9391936 *R/VIFGC.R
ec26c207cdf732a04295c6ac0881349c *R/VIFGC_ovdom.R
72699a26d952f2fc7e1ebced57993b06 *R/Xcheck.R
39391ea344fed2b0299dd1c5076e2fc3 *R/Xfix.R
7f77048009a83fb5c1f1daa326f8b8bc *R/add.phdata.R
271277445eb3611ff60cc60d0c2db74e *R/add.plot.R
7fb4dc6e53d5e38680d60653d11b849c *R/alleleID.R
0ac571d42d9bb3b04323ac7c0ed203be *R/arrange_probabel_phe.R
33733ccd20f25a5a6d45ce06c60073cf *R/ases.R
c7957ef41ab11cdb389898cab4163b4c *R/autosomal.R
5dfaa2a573b72ac4038352451bd7d704 *R/blurGenotype.R
39996703b3495791633dff34fdad7b2e *R/catable.R
e4aeb2afdd973dea2c7c2eb39ec293f2 *R/ccfast.R
734572056100f7a9afa9ad8edc5ade42 *R/ccfast.new.R
c4942e2ec8a6ebd100739131c183d3bd *R/check.marker.R
fe87f94a2a03937345d01aad1b61490a *R/check.marker.internal.R
a195ec92554459455fa40da06b41af9e *R/check.trait.R
0f4adb750a7ad39a7d8064183cdaf785 *R/checkPackageVersionOnCRAN.R
463f3b530040de41d781d493ae9c0e55 *R/checkphengen.R
31b95bb7069c44608c16869aeb0a6ead *R/chi2_CG.R
559e1756369bdfd463526a8e814f523b *R/cocohet.R
d6146d450fe0a7fcecd360fbc5ea279d *R/convert.snp.affymetrix.R
93ddf922b3d94217cf29676259bb4d67 *R/convert.snp.illumina.R
4b46fb73cabaed36e12fa2358176efb9 *R/convert.snp.mach.R
255728999a5434f4a00b7c35f9ad9cfa *R/convert.snp.ped.R
b9f66cab9a32d97098d584a10b0695e3 *R/convert.snp.text.R
16b68fff3d6ec31b5f3ad3e959a50cf1 *R/convert.snp.tped.R
ead1f468a5734d2b697994db6d6863d7 *R/crnames.R
7971b35b7bb14dcaf855076ecdd80d27 *R/cross.R
a6b3a669053a1ef708856875e55adc6c *R/del.phdata.R
d25aaa2c6f1d9c44cf00ecac8cd0a4d4 *R/descriptives.marker.R
f9aa405b78ccd0a024d72686a9d2d85e *R/descriptives.scan.R
ff0e9356551a6f2ba4d110f85fca772e *R/descriptives.trait.R
8bc2a196ab0526d816dc69fba363f431 *R/dprfast.R
9ae3335629dfcdca53f2872c1a4396e9 *R/drop.out.points.R
85e01942146a73670da87039dd8f977b *R/egscore.R
5c9abc0a9ab02ce79833d9930f37a514 *R/egscore.old.R
f6fe568bf50e953d08669653567acb5d *R/emp.ccfast.R
dcb80c3945e2e29f02f08ae1e9237ea5 *R/emp.grammar.R
f6a4e226283d68221f53658f7d2ff354 *R/emp.mmscore.R
a927d0630328c682f9666c8095898100 *R/emp.qtscore.R
a1e0d461c390812f178de1e94629a211 *R/estlambda.R
7e1b3e0c97163589f6b2d0a415389cc8 *R/export.impute.R
941bb4f729258fc02e6001f0a57c8d6b *R/export.merlin.R
c14c77f1b20d41929062af98bdef517b *R/export.plink.R
0abf60bad82b3ada0f2b9c0bdc2af296 *R/extract.annotation.impute.R
22633b7d85eba342aeb07fcfb8bdd69c *R/extract.annotation.mach.R
ff81f4d72d2e53f6e28e2f7714d14da0 *R/fcc.R
654d40c8ce7cf49e5a436eb540aa07f7 *R/fcc.new.R
cf40386cc434500c299da4acd3eee09f *R/findRelatives.R
d575484e59128b7924865b52dc6b34e5 *R/formetascore.R
72e7198af8d145883f486ed2fca45f96 *R/formetascore_engage.R
7865f50ee5eb2003da6538dd120f333a *R/generateOffspring.R
43eb1c062567ae7292dbab06a8b1ea31 *R/getLogLikelihoodGivenRelation.R
a090e69295fbc056aadac285a518c585 *R/get_snp_plots.R
ba508426e2298f03694f29789f0176ec *R/grammar.R
cc2fedee51846c22876c1287f3ff70c0 *R/grammar.old.R
2ee8824146a4971f0022dd1d36134aec *R/guessType.R
258e7e57f9bdca8632fb91a9a12f9a67 *R/hom.R
64776e9a5f97e596f4f4b03a130b200d *R/hom.old.R
1a4c8ffed0188f5c21227b9de5025421 *R/ibs.R
5054d084638c4702c54a28a429c5fd84 *R/ibs.old.R
7348c44bdabf019eadfd18894cd9279d *R/imphetcheck.R
822e132cb170abbbffbbc1dc5eeb8415 *R/impute2databel.R
f883570ccd5087b46d57cd520699d10e *R/impute2mach.R
76a12318df16296af40a6b23f7868cfc *R/lilog.R
61ec6ba4dd4bb7286068f69c80ce78fc *R/load.gwaa.data.R
18e8521858bdf286b30006004391dbde *R/mach2databel.R
7f993c38126518afafac5eba3056b6c8 *R/makeTransitionMatrix.R
ed3375f6ffa545353528ee7106e1d9b3 *R/merge.gwaa.data.R
9970c0c05b6fd89149cded9d5cccfbcd *R/merge.snp.data.R
0a3deb290054446704e2009abba884e6 *R/metascore.R
b06f5e21703c0978d2c9f214c6c75251 *R/minimac2databel.R
3d939e0161a9c4229a9da85863f8ea6d *R/mlreg.R
12a29346262fa7fe1f6600cd69567b83 *R/mlreg.p.R
0fba73951da94b0b7e44dded2bb96736 *R/mmscore.R
2fd8857f5e266f44b7a232d0cd9a7da0 *R/npsubtreated.R
c70086b167219c90f925716c3d3d1379 *R/palinear2LiLog.R
1c34b48df272d81ada93086bfcdead15 *R/patch_strand.R
81aa4d02f99b6ba162851d401391cdae *R/perid.summary.R
ca2a5d58a34b8f74e89bd80d575991b1 *R/phdata.R
58ddf1e528b6c108c3ecb9aaec424651 *R/plot.check.marker.R
b5921bddfbe2861cd77baddd0c40e4cd *R/plot.scan.gwaa.2D.R
3736ff6caef003bdab1f14ba24614066 *R/plot.scan.gwaa.R
026ce4818a926f26aac7a3f67df350f3 *R/polygenic.R
6ef719a24caa23d06e9d903e18a1c50c *R/polygenic_hglm.R
255a7dbd1473d3c253bbba29cdf1c39b *R/polylik.R
b49e0d1d616659710ca2df89096a0edd *R/put.snps.R
2e37d816500c8e53ea32d2de41af348f *R/qqplot.R
9adae3f0c1891a42d646caf8f276a9e0 *R/qtscore.R
f494b6a09ba1165a24c1d1bab1b23077 *R/qvaluebh95.R
8cc0ec63780d533986ca0de88b0b0666 *R/r2fast.R
2198fae2798999a44df2bca78179f4ca *R/r2fast.old.R
688892f50d8c89d53ab7b0e21cc714da *R/recodeChromosome.R
c3a575116897f351e9ecb78e93efbe6d *R/reconstructNPs.R
7228f2ab044c8113fa64527b666a3e07 *R/redundant.R
b9a06fd379c97b8e3a2ba99da45505fb *R/refresh.gwaa.data.R
54b77c8d63b0364c773e4d31e27d7b6e *R/rhofast.R
59b607771da964f3b226f72a413aa5fd *R/rntransform.R
fea93878a4caa008423de1ad3afdb291 *R/save.gwaa.data.R
bf60b1c58457d96622bd9a3e6ad6329b *R/save.snp.data.R
bcb03696ffd6a904fa460cd2eeb7bfb2 *R/scan.glm.2D.R
3fa45043ecf936609c72a1c96c2a5057 *R/scan.glm.R
a4f1b5ace66b7fe9c4c87ac513683c37 *R/scan.haplo.2D.R
0841b68c236eb8831c94a22438952203 *R/scan.haplo.R
9064044d5b3efdcd94c7b2a669371b56 *R/show.ncbi.R
bd3c823ded16b6336f0c68075fc6c3fb *R/snp.data.R
7418a051df56952124f9cbdba6598f65 *R/snp.names.R
1d9e11f2678fd885565ccfa4446aed27 *R/snp.subset.R
26fe6a97d142cd24d6a88a6666920791 *R/sortmap.internal.R
171deabd12251a549284c4f79f6832ba *R/ss.R
7fbcf094bbe56c5b6556a5d3f24054f6 *R/sset.R
fc5c82f8dd56aceab0006c665c8f8ad0 *R/summary.check.marker.R
6080a0a272b6a2c34495ae093e2603d0 *R/summary.gwaa.data.R
33a0d9db1c63e31c2e9082a3fc8f103b *R/summary.scan.gwaa.R
226934b613ba5454d938d6f2c31d4217 *R/summary.snp.data.R
1abb92ac6a97b1312133fe6560ba9ec8 *R/summary.snp.data_old.R
e730fd15d99278c182e479488a79935c *R/update.check.marker.R
088315d3bdfbfb1ea5929be260217bd0 *R/zUtil.R
49aa20de6f6ecce74550eaa4971b9656 *R/ztransform.R
a1e47ca08ebcfb46164e3b41d3c273e0 *R/zzz.R
ce4dfc87fc5a4c594cd5450daa68bc2f *TODO
9099bb0fc8e434069a2fde836961fba6 *demo/00Index
ccb2b096b7ab3c84baf357455816e464 *demo/ge03d2.R
1e34968d03107e24f9a715197e196493 *demo/ge03d2ex.R
a0e8279aa78d8b9a8b366acf52efad52 *demo/srdta.R
974175a85d56bc4c36e66a24dfa99732 *demo/srdtawin.R
42d2f6cd321e497fd589d10c3467c77b *inst/doc/GenABEL-tutorial.pdf
5981dd152baf22de38605a8a915e29e5 *inst/doc/index.html
90e214a35d5e2e3bddc7859ff1cfd1ca *inst/exdata/chr18.raw
ef4a166b9e54a3b151ba721dc7f5427e *inst/exdata/map.18
2b7c6e25b2b896a95f0a37d0e6ea99d1 *inst/exdata/pedin.18
6aa18963d4f47aa6773adc69aa6b1d1f *inst/exdata/phenos.18
ebead0596d338492e7573cf8795fb611 *inst/unitTests/Makefile
1f9acd76f3093fa39b07c2ddb2cc8cef *inst/unitTests/report.html
7df47a88172200e063c2523d0545d7df *inst/unitTests/report.txt
8e5c83a8582997f33b028d88eb89a299 *inst/unitTests/reportSummary.txt
0db4a647d200aa21a80ad8f32aa0abbe *inst/unitTests/runit.convert.snp.R
e4a73800e5b0998beede833bb988ff06 *inst/unitTests/runit.convert.snp.ped.R
0e8c3b6659036520108016d3e68cad80 *inst/unitTests/runit.descriptives.trait.R
637881ebfe43d3d434916dc7b5ca7a4d *inst/unitTests/runit.exports.R
c7f5e93aeec0d75f2ddf08e2a4f293ef *inst/unitTests/runit.findRelatives.R
1a69896386fa09e4bc0d9505a28940cb *inst/unitTests/runit.impute2xxx.R
e4f7d2b157b23759e51abef8b0e7f728 *inst/unitTests/runit.impute2xxx_large.R
deccb77dce7975c0815ef7a7bd66f2fe *inst/unitTests/runit.iterator.R
744985ae68d6c7b97bc43cb9357ffba1 *inst/unitTests/runit.mach2databel.R
ed4da0999c5de0524bd71c23a1ff9687 *inst/unitTests/runit.merge.R
fbb426bc4764abce4f406667716a2843 *inst/unitTests/runit.mmscore.R
55c81cfe53b49c04728d458238c22d98 *inst/unitTests/runit.polygenic.R
c1e260ee9eef0d277a2176aa5cc6f63e *inst/unitTests/runit.polylik.R
72a450d1b5c1e29593e2dc2557040b2f *inst/unitTests/runit.qtscore.R
184b92c95b973a4f7e27921a1f8b48de *inst/unitTests/runit.recodeChromosome.R
eef7392ed8c0e8b5a24460beeed64dfb *inst/unitTests/runit.sortmap.internal.R
50a29f7f60a0931fdf20bb397e08a7cf *inst/unitTests/runit.strandModify.R
cc4e54de4d20ad5fe9ad2c79eb5d6e89 *inst/unitTests/shared_functions.R
fded64e0c12efee92719299fa0ffd215 *man/GASurv.Rd
73e863e0f64c7a36128033187e1dfb2c *man/GenABEL.Rd
93317076077744fdd714458d3b3e5d9d *man/HWE.show.Rd
014e0c9b888fe60b01a36f08fdabe945 *man/PGC.Rd
eef1b1873ab65e237e2390b199fb41a5 *man/VIFGC.Rd
d829cbcd89cfdeb3c030f8732cd30f06 *man/VIFGC_ovdom.Rd
f88b5030021d3ae709aff71423e6090b *man/Xfix.Rd
52134ca7a441ab6ea75584bbf5b6bfd9 *man/add.phdata.Rd
4316de2020215a6214daea4d8bf052ef *man/add.plot.Rd
06c3535348db7c280d5901aa9dd618bd *man/arrange_probabel_phe.Rd
23b5d7f39d2fb4c24a23b1a93b309ff8 *man/as.character.gwaa.data.Rd
1587ad54012003612a84baa99823c51f *man/as.character.snp.coding.Rd
64f13a481bcf032dc81ab2d56cd2b13c *man/as.character.snp.data.Rd
3135e0cfc359bfcad8c028630d3b29ed *man/as.character.snp.strand.Rd
daa2f7a28c784db7dd1220d97057e5e3 *man/as.data.frame.gwaa.data.Rd
76791580d938305c205f1a7f37504b75 *man/as.double.gwaa.data.Rd
3169363c9914de9cfc3149b4ccaee5c2 *man/as.double.snp.data.Rd
2928358c36ee8f909b5ccda6ca214960 *man/as.genotype.Rd
a6b838408afa2e12edec18f3b52ec728 *man/as.genotype.gwaa.data.Rd
a806f9af6b17fe54523a6755d6fd0e5b *man/as.genotype.snp.data.Rd
d8eaf73f9a7fa9bf40bf0f13b20332eb *man/as.hsgeno.Rd
4964a55964fdb197fa8f4f8ade0ce459 *man/as.hsgeno.gwaa.data.Rd
0f65c85bcdb649176906ab6a24c5c4d0 *man/as.hsgeno.snp.data.Rd
2e9bcae6cb7e717972125d379bbfeba1 *man/autosomal.Rd
668cf3a847f3e727335bfee47e5d3550 *man/blurGenotype.Rd
2c3679df27c70ece34b0e6aeb5940731 *man/catable.Rd
d70511903f10c97d52345e2e69361e0e *man/ccfast.Rd
a7f814e34d8acf31044ea7263074b914 *man/check.marker-class.Rd
f848d6b9987bb9027ad5b357b73aaae4 *man/check.marker.Rd
f6c030b62279488399874d2543b84ff9 *man/check.trait.Rd
901926cb50f2939e6da304cbe98350ac *man/checkPackageVersionOnCRAN.Rd
bdfda8746de2a11e0888876c44e0c768 *man/cocohet.Rd
4f18db88ad18399a3723c5cd847434a5 *man/convert.snp.affymetrix.Rd
17e5cb066f2c7fd992490e6d55a89812 *man/convert.snp.illumina.Rd
0b6848f3391413e788104f252c4f5f61 *man/convert.snp.mach.Rd
0780851a72b768585d3e611a8cd3a822 *man/convert.snp.ped.Rd
728c636e7aa42085855cadccf6f1f3b3 *man/convert.snp.text.Rd
92289bedac046ba27ceb686adc41dd0b *man/convert.snp.tped.Rd
b897806335ec3482356be9863828f08a *man/crnames.Rd
002db2be44aa055b9a66f51453eee46d *man/del.phdata.Rd
0542756e976d8326842ab576c70a18fa *man/descriptives.marker.Rd
094ec38e344806d026ae05cbd96a569a *man/descriptives.scan.Rd
19217c5183c70d4de70aeabbcc475928 *man/descriptives.trait.Rd
5939d8c205f8ffe6b15db798e12f1e68 *man/dprfast.Rd
c931a94f95a651bfb79751d7fcc33fb1 *man/egscore.Rd
924a1bdc8a06dd71a78dd7b51f364805 *man/egscore.old.Rd
dc0b35512a6c16f5436f6fd8fac7c32c *man/emp.ccfast.Rd
883d4f825617cb864da98cd6c0c2f30b *man/emp.qtscore.Rd
030117a4838bf8e5f3256e6bbc52d146 *man/estlambda.Rd
e5e2e312e16aee9505f3b076a5a78d61 *man/export.impute.Rd
e6d34bd83f259df6480636efdacb3156 *man/export.merlin.Rd
9319544d8d2ff46e0ba170bb2a0d921c *man/export.plink.Rd
dab2b0f723af260150e15fee9aa4073f *man/extract.annotation.impute.Rd
066c3a6cadd8968c86aa4f552dfb5fa7 *man/extract.annotation.mach.Rd
9824a80162585521735f91dec5ff224e *man/findRelatives.Rd
df61c65baac4e5aebcf91741e25891ee *man/formetascore.Rd
99f8ec2cdd01790626be4eccb42eaf62 *man/generateOffspring.Rd
b532c7a2d8e3bcb3bfd7f8fdd408b5b4 *man/getLogLikelihoodGivenRelation.Rd
27e7c87e8d2c9d4802ffb62b9fc541a7 *man/grammar.Rd
a71bb96f868b3e235713fe57a4d0dcc1 *man/gwaa.data-class.Rd
e3de65c84d998c0db931957422f221b9 *man/hom.Rd
50929c23bd732c35249b8b1242a03f21 *man/hom.old.Rd
32f4ae0985f817a788e21e641e137b33 *man/ibs.Rd
620e618eabd5554c0a41611d7f921303 *man/ibs.old.Rd
29285879eac64f54eba5aed50df9d6f4 *man/impute2databel.Rd
dd3f400213313cc62444f33a01632af2 *man/impute2mach.Rd
1f8117f220143e532a3f52350125bda3 *man/load.gwaa.data.Rd
97c9068abd48c73651f66261feb44638 *man/mach2databel.Rd
b66e180b55bfe9e1bc0c0614cbb7fbe0 *man/makeTransitionMatrix.Rd
554b22e533380171a357c9a08b330289 *man/merge.gwaa.data.Rd
4dacf79fbac26964c4cc318d7cd5f047 *man/merge.snp.data.Rd
44e017d76e0317467dbb92cb29621da2 *man/mlreg.Rd
d6cd6cbb4c2f8a88eb96cedd34528e01 *man/mlreg.p.Rd
be9a60c30670f43a4505e3f1ad9c9129 *man/mmscore.Rd
16c0ac00539eda990eb225b5edbc60e8 *man/npsubtreated.Rd
4aa18d233e866d04c10542863979fda2 *man/patch_strand.Rd
bb50250592e7aa96c3c37ec264ef9453 *man/perid.summary.Rd
0ad3661465be08a6af8dae1f8921b914 *man/plot.check.marker.Rd
23de687ac4b79eac6da4445025cb5ccc *man/plot.scan.gwaa.2D.Rd
efb78d97686aab18a1c059c8fd025132 *man/plot.scan.gwaa.Rd
de7dc4d9e951a38f7873b49420d0b814 *man/polygenic.Rd
bc9837b4ba3c264ed0e935a4f6971cc2 *man/polygenic_hglm.Rd
aa11e54a5d523f6a7f3bc2f377613a63 *man/qtscore.Rd
65f753abde79c3b55f8a0a447a202b4a *man/qvaluebh95.Rd
852059f4fe5bfa5ca1a7c45b51460e2e *man/r2fast.Rd
8d13099f3ce206f8693d33216e1583f1 *man/r2fast.old.Rd
42ff66ff16161830c8870ca16c60e045 *man/recodeChromosome.Rd
75e5f9bdd28b0f09b4478a3e44a1bc6f *man/reconstructNPs.Rd
5ff00a54fa27de6bcf93842dc07113b0 *man/redundant.Rd
4abf15961d5b73408db37ba3b8f83858 *man/refresh.gwaa.data.Rd
9e7fff806c3a3b53b9ade2aba44022ab *man/rhofast.Rd
c8f8365feb2a3eef9430c62dbb6a4c8f *man/rntransform.Rd
f655a3e52117f40767c33c6e59281be2 *man/save.gwaa.data.Rd
fbbc7aecc5d454772cc79de9360b2c36 *man/scan.glm.2D.Rd
cbbac10f45df26947cafe14e5e2ff9fb *man/scan.glm.Rd
893bdbb3d13f51184acfb7074dcfdb88 *man/scan.gwaa-class.Rd
17d48ec73cc83784a3d71bd2a0381b25 *man/scan.gwaa.2D-class.Rd
35fa06d4cd723f3e25ad3fdaced2c972 *man/scan.haplo.2D.Rd
e2617cf09cc0996662630aee08eb061e *man/scan.haplo.Rd
84cbb19b422efc6b7e6a525aa15c516b *man/show.ncbi.Rd
4f1d8daedbd720fd9628b3176977316b *man/snp.coding-class.Rd
5eb7db38fe8f7b1b0b934383ec046952 *man/snp.data-class.Rd
6c538a017b39c5064f43844c88f5afc2 *man/snp.data.Rd
594a6b27fa05faf7b0f80c2b4fb5a770 *man/snp.mx-class.Rd
f60f1e9b2118b3d10fc9da0ebb4722b1 *man/snp.names.Rd
0682dac63f139275a43ada9d59c433cb *man/snp.strand-class.Rd
60724c3c7a64da6a87900ff37ea7f951 *man/snp.subset.Rd
985d03a5b8b49c2e82a2144fafe15ae1 *man/snps.cell-class.Rd
d79ba2234d890117010a13f228db1183 *man/sortmap.internal.Rd
a5fc7986f5405a0a0bb8ef1146f0fedc *man/sset.Rd
e5d4e51a16f5f2f7adc898ff8a1e94b9 *man/summary.check.marker.Rd
e042394910179fbbb0ba58b6c196abe9 *man/summary.gwaa.data.Rd
6b606b717dbee1de6b118af96a86cef6 *man/summary.scan.gwaa.Rd
34d4bb48a32afd4eeb20e4e22cf26f7b *man/summary.snp.data.Rd
5b2682d248dc01bc36a2f8a62435b01f *man/ztransform.Rd
8d4061e6e133623752e16efb00aa1422 *src/AbstractMatrix.cpp
ff812f854aca96525ee861e67a963ab9 *src/AbstractMatrix.h
72edecd568325ec8df2bfa5a0e4e48f9 *src/AbstractMatrix_R.cpp
5b621f1c85ad93fe5f1cc9f97c7467bc *src/CastUtils.cpp
f878fe4ac583c9645f58bd164565812f *src/CastUtils.h
1f6011de41eb99b576997614064d6205 *src/Chip.cpp
596231444ef3da575b9a9b0d76f11407 *src/Chip.h
62f3e3d9daa56f4d7dae8fb3fda43fb9 *src/FileVector.cpp
b14bed6d97822c99c28a71e2eb89ccf2 *src/FileVector.h
9ef1d6b19bc730c6a6e8399d1e64c2df *src/FilteredMatrix.cpp
22490efa577baf13aabcb0420f96830f *src/FilteredMatrix.h
49080af7f95c51471d322dae5aba9e8c *src/FilteredMatrix_R.cpp
dfd1bf74b92f619ce3d5d6cff3f94d73 *src/Logger.cpp
da32a584df09236652cdb5afa71a5fee *src/Logger.h
954d079a6dc5505b20bd7f430a46fae8 *src/Makevars
954d079a6dc5505b20bd7f430a46fae8 *src/Makevars.win
80706bb55613d665b18e26219aaf5694 *src/RealHandlerWrapper.cpp
cf0641bf351c10da269714a81ee096ed *src/RealHandlerWrapper.h
1b5a544a1dd2bd678b0b6156a48f43ea *src/ReusableFileHandle.cpp
27c96153fa1e1f9f046ec1b8f2a53186 *src/ReusableFileHandle.h
7cc201b667a4910ebcce76179bf352b7 *src/Rstuff.h
49c41f4a9243a013ca98fbf18b01c818 *src/Transposer.cpp
a003709ea3b573a6de4cf7e41da02b2b *src/Transposer.h
f3058fa67bdb72b040287b82c4fd64c1 *src/chinv2.cpp
b43bba5c7093b2794ce842b78fac69d3 *src/cholesky2.cpp
17800a2c40adb38ffc60c74c28b6637f *src/chsolve2.cpp
678c59c08b59debc3400ba63402d746a *src/const.h
b99e4957c0f2890cec22c23e8330777b *src/convert.snp.affymetrix.cpp
7070a0922b46824b7ef0a6af506cb162 *src/convert_snp_illumina.cpp
f1053908e97390a949de6f3dbae39e54 *src/convert_snp_merlin.cpp
b01c8bdf22a26aaeffed284a2c7878a6 *src/convert_snp_merlin_wslash.cpp
442c94fbc26e968593e2a08efce8d8f2 *src/convert_snp_tped.cpp
3850886c5005d9398cb46357966448fe *src/convert_util.cpp
3b285b4e1ebdb0cb5f2b5316a3a2c14d *src/convert_util.h
0c16102bd5085bb170f08975e216285b *src/coxfit2.cpp
a8e0d66b4dc99f6fed5da485657c4bc3 *src/ctest.h
0df6629dba2343762843e8ba62e33184 *src/dautil.cpp
adac42ad74faff40f3b8d6134b6b3223 *src/dautil.h
43eeae4e101e3ba988e9acba7e00124b *src/dmatrix.cpp
564915d5e5460c7161e21541c6eb2c81 *src/dometa.cpp
2fa3420fb973b43c9f6eab7fb30ac442 *src/dometa.h
daf9f24b03950b59740e0adfc794a459 *src/export_plink.cpp
09ff24ad19f53a5f049f8614b9a3f0f5 *src/export_plink.h
aca376adfec9302ddae7d8a60d9a826c *src/fexact.c
12c7d34b36d6275b9e3f6ea324ea64da *src/frutil.cpp
afd409bb18d2070f56b0c77b06b0bfe4 *src/frutil.h
0aae128998e969c3ed473426e651fb40 *src/frversion.h
13c366fb275ab3153a089d71ef624f45 *src/gtps_container.cpp
5b12bbf77791c4bd25a3a6cc52dc7fe5 *src/gtps_container.h
a6c6052f4a647191d7beda43d11ebb18 *src/gwaa.c
2dba7eebe1d3807518c50339ad2dd09c *src/gwaa_cpp.cpp
e599c071d8284c967eba459a9bd9c66d *src/gwaa_cpp.h
357e6ab0215b72a2e561315c598072ad *src/gwaa_data.cpp
063a4d685860af26d63c429f5920272b *src/gwaautil.cpp
545057c2986803c0f8a57ab02cca143d *src/interactions_rare_recesive_alleles.cpp
7f5b2dda23103eb649b317d7b41a8dc1 *src/interactions_rare_recesive_alleles.h
e1c0d1fd940206a4dc40514094e1aef0 *src/iterator.cpp
f3e9a18658770c9628dfb960a2d15174 *src/iterator.h
a4fdb872fbc3755a84e9d4a12591a7b6 *src/iterator_functions.cpp
875cb19a9277a46f2f9dadbefbd2b94c *src/iterator_functions.h
dbe6585b2c5229ff992177881f4f6bd8 *src/lm_gwaa.cpp
0cc49c93ad765d023b6d519b93284550 *src/mematri1.h
cb286bb98c9984cfc5edc60742798e69 *src/mematriR.h
02eb6ee6483a14f6ef69edff1f776ca0 *src/mematrix.h
97da69a05979f366b96cf2b185c1047d *src/merge.snp.data.cpp
b34a02c1fed82ad21909abd90ce810b5 *src/reg1.h
d567644f3b7acb14480b5e0bd2cad889 *src/reg1data.h
a190984ebffc419d57dc5dbbfe3be878 *src/survS.h
ec1ff1dff59527a17709843737134ddd *src/survproto.h
ff0bb8b9a583bd1b2854aae801506de7 *tests/TEST10x15.geno
d2a505ffff8be0246128c34ecf285227 *tests/big_data/README
20153ff373f0496d5f6c98edb787d09a *tests/gatest.illu
bfd757466aa5f6219a228477286194ff *tests/gatest.map
c458885da66174e3ab9c897c11bf0d6c *tests/gatest.ped
d70b716dfdfb91278d4404d8ffd3e7f2 *tests/gatest.phe
c37d68fcfb514c00c4eb01edf821d96c *tests/gatest.tfam
d77915f9808c4830fcce03f638d117ad *tests/gatest.tped
5fb6984ae116feff0246c8cc8f6e0060 *tests/gatest1.phe
b43d67bebedcf56a04568262d8cd2775 *tests/gatest1.tfam
fe55ecc56bdf48e2e4dda62203dc0005 *tests/gatest1.tped
21c32cdc1929d5b3e210747fe6803968 *tests/impute.sample5
ef4a166b9e54a3b151ba721dc7f5427e *tests/map.18
2b7c6e25b2b896a95f0a37d0e6ea99d1 *tests/pedin.18
47712115965b34c1514d451b13f49c20 *tests/test.mldose
e509805816b0cde6de8029990505ba23 *tests/test.mlinfo
c15daafcadda320b74a67c68b42f02ab *tests/test.mlprob
e7c9184dd29ccca3514b69a6205ffb5a *tests/test_impute2databel.R.save
8e0e080952c5d28ba0edc645655a7f3e *tests/test_markers
ac0c3129e152b3ab23f8923397346c5f *tests/test_mmscore_results_revision_1321
dea65090806071c4ba46ff3caac7a452 *tests/test_phenos