1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259
|
# Create a new layer
# Layer objects store the layer of an object.
#
# They have the following attributes:
#
# * data
# * geom + parameters
# * statistic + parameters
# * position + parameters
# * aesthetic mapping
# * flag for display guide: TRUE/FALSE/NA. in the case of NA, decision depends on a guide itself.
#
# Can think about grob creation as a series of data frame transformations.
Layer <- proto(expr = {
geom <- NULL
geom_params <- NULL
stat <- NULL
stat_params <- NULL
data <- NULL
mapping <- NULL
position <- NULL
params <- NULL
inherit.aes <- FALSE
new <- function (., geom=NULL, geom_params=NULL, stat=NULL, stat_params=NULL, data=NULL, mapping=NULL, position=NULL, params=NULL, ..., inherit.aes = TRUE, legend = NA, subset = NULL, show_guide = NA) {
# now, as for the guide, we can choose only if the layer is included or not in the guide: guide = TRUE or guide = FALSE
# in future, it may be better if we can choose which aes of this layer is included in the guide, e.g.: guide = c(colour = TRUE, size = FALSE)
if (!is.na(legend)) {
gg_dep("0.8.9", "Use show_guide = TRUE or show_guide = FALSE to display or suppress the guide display.")
show_guide = legend
}
if (!is.na(show_guide) && !is.logical(show_guide)) {
warning("`show_guide` in geom_XXX and stat_XXX must be logical.")
show_guide = FALSE
}
if (is.null(geom) && is.null(stat)) stop("Need at least one of stat and geom")
data <- fortify(data)
if (!is.null(mapping) && !inherits(mapping, "uneval")) stop("Mapping should be a list of unevaluated mappings created by aes or aes_string")
if (is.character(geom)) geom <- Geom$find(geom)
if (is.character(stat)) stat <- Stat$find(stat)
if (is.character(position)) position <- Position$find(position)$new()
if (is.null(geom)) geom <- stat$default_geom()
if (is.null(stat)) stat <- geom$default_stat()
if (is.null(position)) position <- geom$default_pos()$new()
match.params <- function(possible, params) {
if ("..." %in% names(possible)) {
params
} else {
params[match(names(possible), names(params), nomatch=0)]
}
}
if (is.null(geom_params) && is.null(stat_params)) {
params <- c(params, list(...))
params <- rename_aes(params) # Rename American to British spellings etc
geom_params <- match.params(geom$parameters(), params)
stat_params <- match.params(stat$parameters(), params)
stat_params <- stat_params[setdiff(names(stat_params),
names(geom_params))]
} else {
geom_params <- rename_aes(geom_params)
}
proto(.,
geom=geom, geom_params=geom_params,
stat=stat, stat_params=stat_params,
data=data, mapping=mapping, subset=subset,
position=position,
inherit.aes = inherit.aes,
show_guide = show_guide,
)
}
clone <- function(.) as.proto(.$as.list(all.names=TRUE))
use_defaults <- function(., data) {
df <- aesdefaults(data, .$geom$default_aes(), NULL)
# Override mappings with atomic parameters
gp <- intersect(c(names(df), .$geom$required_aes), names(.$geom_params))
gp <- gp[unlist(lapply(.$geom_params[gp], is.atomic))]
# Check that mappings are compatable length: either 1 or the same length
# as the data
param_lengths <- vapply(.$geom_params[gp], length, numeric(1))
bad <- param_lengths != 1L & param_lengths != nrow(df)
if (any(bad)) {
stop("Incompatible lengths for set aesthetics: ",
paste(names(bad), collapse = ", "), call. = FALSE)
}
df[gp] <- .$geom_params[gp]
df
}
layer_mapping <- function(., mapping = NULL) {
# For certain geoms, it is useful to be able to ignore the default
# aesthetics and only use those set in the layer
if (.$inherit.aes) {
aesthetics <- compact(defaults(.$mapping, mapping))
} else {
aesthetics <- .$mapping
}
# Drop aesthetics that are set or calculated
set <- names(aesthetics) %in% names(.$geom_params)
calculated <- is_calculated_aes(aesthetics)
aesthetics[!set & !calculated]
}
pprint <- function(.) {
if (is.null(.$geom)) {
cat("Empty layer\n")
return(invisible());
}
if (!is.null(.$mapping)) {
cat("mapping:", clist(.$mapping), "\n")
}
.$geom$print(newline=FALSE)
cat(clist(.$geom_params), "\n")
.$stat$print(newline=FALSE)
cat(clist(.$stat_params), "\n")
.$position$print()
}
compute_aesthetics <- function(., data, plot) {
aesthetics <- .$layer_mapping(plot$mapping)
if (!is.null(.$subset)) {
include <- data.frame(eval.quoted(.$subset, data, plot$env))
data <- data[rowSums(include, na.rm = TRUE) == ncol(include), ]
}
# Override grouping if set in layer.
if (!is.null(.$geom_params$group)) {
aesthetics["group"] <- .$geom_params$group
}
scales_add_defaults(plot$scales, data, aesthetics, plot$plot_env)
# Evaluate aesthetics in the context of their data frame
evaled <- compact(
eval.quoted(aesthetics, data, plot$plot_env))
lengths <- vapply(evaled, length, integer(1))
n <- if (length(lengths) > 0) max(lengths) else 0
wrong <- lengths != 1 & lengths != n
if (any(wrong)) {
stop("Aesthetics must either be length one, or the same length as the data",
"Problems:", paste(aesthetics[wrong], collapse = ", "), call. = FALSE)
}
if (empty(data) && n > 0) {
# No data, and vectors suppled to aesthetics
evaled$PANEL <- 1
} else {
evaled$PANEL <- data$PANEL
}
data.frame(evaled)
}
calc_statistic <- function(., data, scales) {
if (empty(data)) return(data.frame())
check_required_aesthetics(.$stat$required_aes,
c(names(data), names(.$stat_params)),
paste("stat_", .$stat$objname, sep=""))
res <- NULL
try(res <- do.call(.$stat$calculate_groups, c(
list(data=as.name("data"), scales=as.name("scales")),
.$stat_params)
))
if (is.null(res)) return(data.frame())
res
}
map_statistic <- function(., data, plot) {
if (empty(data)) return(data.frame())
# Assemble aesthetics from layer, plot and stat mappings
aesthetics <- .$mapping
if (.$inherit.aes) {
aesthetics <- defaults(aesthetics, plot$mapping)
}
aesthetics <- defaults(aesthetics, .$stat$default_aes())
aesthetics <- compact(aesthetics)
new <- strip_dots(aesthetics[is_calculated_aes(aesthetics)])
if (length(new) == 0) return(data)
# Add map stat output to aesthetics
stat_data <- as.data.frame(lapply(new, eval, data, baseenv()))
names(stat_data) <- names(new)
# Add any new scales, if needed
scales_add_defaults(plot$scales, data, new, plot$plot_env)
# Transform the values, if the scale say it's ok
# (see stat_spoke for one exception)
if (.$stat$retransform) {
stat_data <- scales_transform_df(plot$scales, stat_data)
}
cunion(stat_data, data)
}
reparameterise <- function(., data) {
if (empty(data)) return(data.frame())
.$geom$reparameterise(data, .$geom_params)
}
adjust_position <- function(., data) {
ddply(data, "PANEL", function(data) {
.$position$adjust(data)
})
}
make_grob <- function(., data, scales, cs) {
if (empty(data)) return(zeroGrob())
data <- .$use_defaults(data)
check_required_aesthetics(.$geom$required_aes,
c(names(data), names(.$geom_params)),
paste("geom_", .$geom$objname, sep=""))
do.call(.$geom$draw_groups, c(
data = list(as.name("data")),
scales = list(as.name("scales")),
coordinates = list(as.name("cs")),
.$geom_params
))
}
class <- function(.) "layer"
})
#' Create a new layer
#'
#' @keywords internal
#' @export
layer <- Layer$new
|