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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/gene_expression.R
\docType{data}
\name{gene_expression}
\alias{gene_expression}
\title{Gene Expression Data}
\format{
A data frame with 1305 rows and 5 columns. \describe{
\item{\code{bcr_patient_barcode}}{sample ID} \item{\code{dataset}}{cance type} \item{\code{GATA3}}{GATA3 gene expression}
\item{\code{PTEN}}{PTEN gene expression}\item{\code{XBP1}}{XBP1 gene expression.}}
}
\usage{
data("gene_expression")
}
\description{
Gene expression data extracted from TCGA using the `RTCGA` and
`RTCGA.mRNA` R packages. It contains the mRNA expression for 3 genes -
GATA3, PTEN and XBP1- from 3 different datasets: Breast invasive carcinoma
(BRCA), Ovarian serous cystadenocarcinoma (OV) and Lung squamous cell
carcinoma (LUSC)
}
\examples{
data(gene_expression)
ggboxplot(gene_expression, x = "dataset",
y = c("GATA3", "PTEN", "XBP1"),
combine = TRUE,
ylab = "Expression",
color = "dataset", palette = "jco")
}
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