1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264
|
#' Draw edges as straight lines between nodes
#'
#' This geom draws edges in the simplest way - as straight lines between the
#' start and end nodes. Not much more to say about that...
#'
#' @section Edge variants:
#' Many geom_edge_* layers comes in 3 flavors depending on the level of control
#' needed over the drawing. The default (no numeric postfix) generate a number
#' of points (`n`) along the edge and draws it as a path. Each point along
#' the line has a numeric value associated with it giving the position along the
#' path, and it is therefore possible to show the direction of the edge by
#' mapping to this e.g. `colour = after_stat(index)`. The version postfixed with a
#' "2" uses the "long" edge format (see [get_edges()]) and makes it
#' possible to interpolate node parameter between the start and end node along
#' the edge. It is considerable less performant so should only be used if this
#' is needed. The version postfixed with a "0" draws the edge in the most
#' performant way, often directly using an appropriate grob from the grid
#' package, but does not allow for gradients along the edge.
#'
#' Often it is beneficial to stop the drawing of the edge before it reaches the
#' node, for instance in cases where an arrow should be drawn and the arrowhead
#' shouldn't lay on top or below the node point. geom_edge_* and geom_edge_*2
#' supports this through the start_cap and end_cap aesthetics that takes a
#' [geometry()] specification and dynamically caps the termini of the
#' edges based on the given specifications. This means that if
#' `end_cap = circle(1, 'cm')` the edges will end at a distance of 1cm even
#' during resizing of the plot window.
#'
#' All `geom_edge_*` and `geom_edge_*2` have the ability to draw a
#' label along the edge. The reason this is not a separate geom is that in order
#' for the label to know the location of the edge it needs to know the edge type
#' etc. Labels are drawn by providing a label aesthetic. The label_pos can be
#' used to specify where along the edge it should be drawn by supplying a number
#' between 0 and 1. The label_size aesthetic can be used to control the size of
#' the label. Often it is needed to have the label written along the direction
#' of the edge, but since the actual angle is dependent on the plot dimensions
#' this cannot be calculated beforehand. Using the angle_calc argument allows
#' you to specify whether to use the supplied angle aesthetic or whether to draw
#' the label along or across the edge.
#'
#' @section Edge aesthetic name expansion:
#' In order to avoid excessive typing edge aesthetic names are
#' automatically expanded. Because of this it is not necessary to write
#' `edge_colour` within the `aes()` call as `colour` will
#' automatically be renamed appropriately.
#'
#' @section Aesthetics:
#' `geom_edge_link` and `geom_edge_link0` understand the following
#' aesthetics. Bold aesthetics are automatically set, but can be overwritten.
#'
#' - **x**
#' - **y**
#' - **xend**
#' - **yend**
#' - edge_colour
#' - edge_width
#' - edge_linetype
#' - edge_alpha
#' - filter
#'
#' `geom_edge_link2` understand the following aesthetics. Bold aesthetics are
#' automatically set, but can be overwritten.
#'
#' - **x**
#' - **y**
#' - **group**
#' - edge_colour
#' - edge_width
#' - edge_linetype
#' - edge_alpha
#' - filter
#'
#' `geom_edge_link` and `geom_edge_link2` furthermore takes the following
#' aesthetics.
#'
#' - start_cap
#' - end_cap
#' - label
#' - label_pos
#' - label_size
#' - angle
#' - hjust
#' - vjust
#' - family
#' - fontface
#' - lineheight
#'
#' @section Computed variables:
#'
#' \describe{
#' \item{index}{The position along the path (not computed for the *0 version)}
#' }
#'
#' @inheritParams ggplot2::geom_path
#' @inheritParams ggplot2::geom_text
#'
#' @param mapping Set of aesthetic mappings created by [ggplot2::aes()]
#' or [ggplot2::aes_()]. By default x, y, xend, yend, group and
#' circular are mapped to x, y, xend, yend, edge.id and circular in the edge
#' data.
#'
#' @param data The return of a call to `get_edges()` or a data.frame
#' giving edges in correct format (see details for for guidance on the format).
#' See [get_edges()] for more details on edge extraction.
#'
#' @param n The number of points to create along the path.
#'
#' @param label_colour The colour of the edge label. If `NA` it will use
#' the colour of the edge.
#'
#' @param label_alpha The opacity of the edge label. If `NA` it will use
#' the opacity of the edge.
#'
#' @param label_parse If `TRUE`, the labels will be parsed into expressions
#' and displayed as described in [grDevices::plotmath()].
#'
#' @param angle_calc Either 'none', 'along', or 'across'. If 'none' the label will
#' use the angle aesthetic of the geom. If 'along' The label will be written
#' along the edge direction. If 'across' the label will be written across the
#' edge direction.
#'
#' @param force_flip Logical. If `angle_calc` is either 'along' or 'across'
#' should the label be flipped if it is on it's head. Default to `TRUE`.
#'
#' @param label_dodge A [grid::unit()] giving a fixed vertical shift
#' to add to the label in case of `angle_calc` is either 'along' or 'across'
#'
#' @param label_push A [grid::unit()] giving a fixed horizontal shift
#' to add to the label in case of `angle_calc` is either 'along' or 'across'
#'
#' @author Thomas Lin Pedersen
#'
#' @family geom_edge_*
#'
#' @examples
#' require(tidygraph)
#' gr <- create_notable('bull') %>%
#' mutate(class = sample(letters[1:3], n(), replace = TRUE)) %>%
#' activate(edges) %>%
#' mutate(class = sample(letters[1:3], n(), replace = TRUE))
#'
#' ggraph(gr, 'stress') +
#' geom_edge_link(aes(alpha = after_stat(index)))
#'
#' ggraph(gr, 'stress') +
#' geom_edge_link2(aes(colour = node.class))
#'
#' ggraph(gr, 'stress') +
#' geom_edge_link0(aes(colour = class))
#' @rdname geom_edge_link
#' @name geom_edge_link
#'
NULL
#' @rdname ggraph-extensions
#' @format NULL
#' @usage NULL
#' @importFrom ggforce StatLink
#' @export
StatEdgeLink <- ggproto('StatEdgeLink', StatLink,
setup_data = function(data, params) {
data <- StatFilter$setup_data(data, params)
data <- remove_loop(data)
if (nrow(data) == 0) return(data)
StatLink$setup_data(data, params)
},
default_aes = aes(filter = TRUE)
)
#' @rdname ggraph-extensions
#' @format NULL
#' @usage NULL
#' @importFrom ggforce StatLink2
#' @export
StatEdgeLink2 <- ggproto('StatEdgeLink2', StatLink2,
setup_data = function(data, params) {
data <- StatFilter$setup_data(data, params)
data <- remove_loop2(data)
if (nrow(data) == 0) return(data)
StatLink2$setup_data(data, params)
},
default_aes = aes(filter = TRUE)
)
#' @rdname geom_edge_link
#'
#' @importFrom ggforce StatLink
#' @export
geom_edge_link <- function(mapping = NULL, data = get_edges('short'),
position = 'identity', arrow = NULL, n = 100,
lineend = 'butt', linejoin = 'round', linemitre = 1,
label_colour = 'black', label_alpha = 1,
label_parse = FALSE, check_overlap = FALSE,
angle_calc = 'rot', force_flip = TRUE,
label_dodge = NULL, label_push = NULL,
show.legend = NA, ...) {
mapping <- complete_edge_aes(mapping)
mapping <- aes_intersect(mapping, aes(
x = x, y = y, xend = xend, yend = yend, group = edge.id
))
layer(
data = data, mapping = mapping, stat = StatEdgeLink,
geom = GeomEdgePath, position = position, show.legend = show.legend,
inherit.aes = FALSE,
params = expand_edge_aes(
list2(
arrow = arrow, lineend = lineend, linejoin = linejoin,
linemitre = linemitre, n = n, interpolate = FALSE,
label_colour = label_colour, label_alpha = label_alpha,
label_parse = label_parse, check_overlap = check_overlap,
angle_calc = angle_calc, force_flip = force_flip,
label_dodge = label_dodge, label_push = label_push, ...
)
)
)
}
#' @rdname geom_edge_link
#'
#' @importFrom ggforce StatLink2
#' @export
geom_edge_link2 <- function(mapping = NULL, data = get_edges('long'),
position = 'identity', arrow = NULL, n = 100,
lineend = 'butt', linejoin = 'round', linemitre = 1,
label_colour = 'black', label_alpha = 1,
label_parse = FALSE, check_overlap = FALSE,
angle_calc = 'rot', force_flip = TRUE,
label_dodge = NULL, label_push = NULL,
show.legend = NA, ...) {
mapping <- complete_edge_aes(mapping)
mapping <- aes_intersect(mapping, aes(x = x, y = y,
group = edge.id))
layer(
data = data, mapping = mapping, stat = StatEdgeLink2,
geom = GeomEdgePath, position = position, show.legend = show.legend,
inherit.aes = FALSE,
params = expand_edge_aes(
list2(
arrow = arrow, lineend = lineend, linejoin = linejoin,
linemitre = linemitre, n = n, interpolate = TRUE,
label_colour = label_colour, label_alpha = label_alpha,
label_parse = label_parse, check_overlap = check_overlap,
angle_calc = angle_calc, force_flip = force_flip,
label_dodge = label_dodge, label_push = label_push, ...
)
)
)
}
#' @rdname geom_edge_link
#'
#' @importFrom ggforce StatLink2
#' @export
geom_edge_link0 <- function(mapping = NULL, data = get_edges(),
position = 'identity', arrow = NULL,
lineend = 'butt', show.legend = NA, ...) {
mapping <- complete_edge_aes(mapping)
mapping <- aes_intersect(mapping, aes(x = x, y = y,
xend = xend, yend = yend))
layer(
data = data, mapping = mapping, stat = StatFilter,
geom = GeomEdgeSegment, position = position,
show.legend = show.legend, inherit.aes = FALSE,
params = expand_edge_aes(
list2(arrow = arrow, lineend = lineend, ...)
)
)
}
|