File: INDEX

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r-cran-haplo.stats 1.4.4-1
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Ginv                    Compute Generalized Inverse of Input Matrix
chisq.power             Power and sample size for the chi-square
                        distribution
f.power                 Power and sample size for the F distribution
find.haplo.beta.qt      Find beta's for risk haplotypes, for specified
                        r2
geno.count.pairs        Counts of Total Haplotype Pairs Produced by
                        Genotypes
geno.recode             Internal functions for the HaploStats package
geno1to2                convert genotype matrix from 1-column 2-column
get.hapPair             Get a list of objects for haplotype pairs
glm.fit.nowarn          Modified from glm.fit function to not warn
                        users for binomial non-integer weights.
haplo.cc                Haplotype Association Analysis in a
                        Case-Control design
haplo.design            Build a design matrix for haplotypes
haplo.em                EM Computation of Haplotype Probabilities, with
                        Progressive Insertion of Loci
haplo.em.control        Create the Control Parameters for the EM
                        Computation of Haplotype Probabilities, with
                        Progressive Insertion of Loci
haplo.em.fitter         Compute engine for haplotype EM algorithm
haplo.glm               GLM Regression of Trait on Ambiguous Haplotypes
haplo.glm.control       Create list of control parameters for haplo.glm
haplo.group             Frequencies for Haplotypes by Grouping Variable
haplo.hash              Integer Rank Codes for Haplotypes
haplo.model.frame       Sets up a model frame for haplo.glm
haplo.power.cc          Compute either power or sample size for
                        haplotype associations in a case-control study.
haplo.power.qt          Compute either power or sample size for
                        haplotype associations with a quantitative
                        trait.
haplo.scan              Search for a trait-locus by sliding a
                        fixed-width window over each marker locus and
                        scanning all possible haplotype lengths within
                        the window
haplo.score             Score Statistics for Association of Traits with
                        Haplotypes
haplo.score.merge       Merge haplo.score And haplo.group Objects
haplo.score.slide       Score Statistics for Association of Traits with
                        Haplotypes
hla.demo                HLA Loci and Serologic Response to Measles
                        Vaccination.
locator.haplo           Find Location from Mouse Clicks and Print
                        Haplotypes on Plot
loci                    Create a group of locus objects from a genotype
                        matrix, assign to 'model.matrix' class.
locus                   Creates an object of class "locus"
louis.info              Louis Information for haplo.glm
na.geno.keep            Remove rows with NA in covariates, but keep
                        genotypes with NAs
plot.haplo.score        Plot Haplotype Frequencies versus Haplotype
                        Score Statistics
plot.haplo.score.slide
                        Plot a haplo.score.slide Object
plot.seqhap             Plot a seqhap object
print.haplo.cc          Print a haplo.cc object
print.haplo.em          Print contents of a haplo.em object
print.haplo.glm         Print a contents of a haplo.glm object
print.haplo.group       Print a haplo.group object
print.haplo.scan        Print a haplo.scan object
print.haplo.score       Print a haplo.score object
print.haplo.score.merge
                        Print a haplo.score.merge object
print.haplo.score.slide
                        Print the contents of a haplo.score.slide
                        object
print.seqhap            Print Contents of a Seqhap Object
printBanner             Print a nice banner
score.sim.control       Create the list of control parameters for
                        simulations in haplo.score
seqhap                  Sequential Haplotype Scan Association Analysis
                        for Case-Control Data
seqhap.dat              Simulated data for seqhap examples
setupData               Set up an example dataset provided within the
                        library.
setupGeno               Create a group of locus objects from a genotype
                        matrix, assign to 'model.matrix' class.
summary.haplo.em        Summarize contents of a haplo.em object
summaryGeno             Summarize Full Haplotype Enumeration on
                        Genotype Matrix
x.sexcheck              consistency checks for x.linked locus