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#
# Copyright (c) 2008-2010 Revolution Analytics
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# This function makes iterator makers. The resulting iterator makers all take
# an optional "count" argument which specifies the number of times the
# resulting iterator should fire. The iterators are wrappers around functions
# that return different values each time they are called. All this is done to
# avoid cutting and pasting the same code repeatedly.
makeIwrapper <- function(FUN) {
function(..., count) {
if (!missing(count) && (!is.numeric(count) || length(count) != 1))
stop('count must be a numeric value')
# construct the call object to put into the nextElem function
m <- as.call(c(as.name(FUN), list(...)))
# construct the body of the nextElem function
fbody <- if (missing(count)) {
m
} else {
substitute({
if (count > 0) {
count <<- count - 1L
REPLACETHIS
} else {
stop('StopIteration', call.=FALSE)
}
}, list(REPLACETHIS=m))
}
# create the nextElem function using fbody
nextEl <- function() NULL
body(nextEl) <- fbody
# create and return the iterator object
it <- list(nextElem=nextEl)
class(it) <- c('abstractiter', 'iter')
it
}
}
# define some iterator makers using makeIwrapper
irunif <- makeIwrapper('runif')
irnorm <- makeIwrapper('rnorm')
irbinom <- makeIwrapper('rbinom')
irnbinom <- makeIwrapper('rnbinom')
irpois <- makeIwrapper('rpois')
isample <- makeIwrapper('sample')
# a counting iterator
icount <- function(count) {
if (missing(count))
count <- NULL
else if (!is.numeric(count) || length(count) != 1)
stop('count must be a numeric value')
i <- 0L
nextEl <- function() {
if (is.null(count) || i < count)
(i <<- i + 1L)
else
stop('StopIteration', call.=FALSE)
}
it <- list(nextElem=nextEl)
class(it) <- c('abstractiter', 'iter')
it
}
# an iterator over pieces of a number
idiv <- function(n, ..., chunks, chunkSize) {
if (!is.numeric(n) || length(n) != 1)
stop('n must be a numeric value')
if (length(list(...)) > 0)
stop('chunks and chunkSize must be specified as named arguments')
if ((missing(chunkSize) && missing(chunks)) ||
(!missing(chunkSize) && !missing(chunks)))
stop('either chunks or chunkSize must be specified, but not both')
if (missing(chunks)) {
if (!is.numeric(chunkSize) || length(chunkSize) != 1 || chunkSize < 1)
stop('chunkSize must be a numeric value >= 1')
chunks <- ceiling(n / chunkSize)
}
nextEl <- function() {
if (chunks <= 0 || n <= 0)
stop('StopIteration', call.=FALSE)
m <- ceiling(n / chunks)
n <<- n - m
chunks <<- chunks - 1
m
}
it <- list(nextElem=nextEl)
class(it) <- c('abstractiter', 'iter')
it
}
# an iterator over text lines from a connection
ireadLines <- function(con, n=1, ...) {
if (!is.numeric(n) || length(n) != 1 || n < 1)
stop('n must be a numeric value >= 1')
if (is.character(con)) {
con <- file(con, open='r')
doClose <- TRUE
} else {
doClose <- FALSE
}
nextEl <- function() {
if (is.null(con))
stop('StopIteration', call.=FALSE)
r <- readLines(con, n=n, ...)
if (length(r) == 0) {
if (doClose)
close(con)
con <<- NULL
stop('StopIteration', call.=FALSE)
}
r
}
it <- list(nextElem=nextEl)
class(it) <- c('abstractiter', 'iter')
it
}
# an iterator over rows of a data frame read from a file
iread.table <- function(file, ..., verbose=FALSE) {
args <- list(...)
argnames <- names(args)
# need to do this (at least for now) because the default values for
# header and row.names depend on the first few lines of the file,
# which could cause a different number of columns to be returned from
# the first versus the subsequent calls to read.table
if (!all(c('header', 'row.names') %in% argnames))
stop('both header and row.names must be specified in this implementation')
nrows <- if ('nrows' %in% argnames) args$nrows else 1
row.names <- args$row.names
# it doesn't seem to make sense to allow nrows < 1 for the "iterator"
# version of read.table
if (!is.numeric(nrows) || length(nrows) != 1 || nrows < 1)
stop('nrows must be a numeric value >= 1')
# open the file if necessary and remember to close it
if (is.character(file)) {
file <- file(file, open='r')
doClose <- TRUE
} else {
doClose <- FALSE
}
# create the call object that we'll use to call read.table
m <- as.call(c(as.name('read.table'), file='', list(...)))
m$file <- file
m$nrows <- nrows # needed since we use a different default than read.table
env <- sys.frame(sys.nframe())
# compute these once rather than repeatedly
rnlen <- length(row.names)
gotrownames <- is.character(row.names) && rnlen > 1
# initialize a few state variables
first.time <- TRUE
irow <- 1
errmsg <- NULL
nextEl <- function() {
if (!is.null(errmsg))
stop(paste('iterator failed previously:', errmsg), call.=FALSE)
if (is.null(file))
stop('StopIteration', call.=FALSE)
if (gotrownames) {
rem <- rnlen - irow + 1 # remaining strings in row.names
nrows <<- min(nrows, rem) # possibly decrease nrows to match row.names
# there is a problem if nrows is one: we would have to set row.names
# to a character vector of length one, which is interpreted
# incorrectly by read.table
if (nrows > 1)
m$row.names <<- row.names[seq(irow, length=nrows)]
else
m['row.names'] <<- list(NULL) # we'll fix the row names later
m$nrows <<- nrows
}
# call read.table to actually read the file
r <- tryCatch({
# handle the case where we've run out of row names
if (nrows > 0) {
if (verbose)
print(m)
eval(m, env)
} else {
NULL
}
},
error=function(e) {
# this error is thrown at the end of input sometimes
# but other times a data frame with no rows is returned
# (for instance when col.names is specified)
if (!identical(conditionMessage(e), 'no lines available in input')) {
if (doClose)
close(file)
file <<- NULL
errmsg <<- conditionMessage(e)
stop(e)
}
NULL
})
# set header to FALSE, skip to 0, and col.names to names(r)
# after the first call to read.table
if (first.time) {
first.time <<- FALSE
m$header <<- FALSE
m$skip <<- 0
nms <- names(r)
if (is.numeric(row.names)) {
nms <- if (row.names == 1)
c('', nms)
else if (row.names >= length(nms))
c(nms, '')
else
c(nms[1:(row.names-1)], '', nms[row.names:length(nms)])
}
m$col.names <<- nms
}
# check if we're done reading
if (is.null(r) || nrow(r) == 0) {
if (doClose)
close(file)
file <<- NULL
stop('StopIteration', call.=FALSE)
}
if (gotrownames) {
# fix the row names for this particular case
if (nrows == 1)
rownames(r) <- row.names[irow]
# update the index into row.names
irow <<- irow + nrows
}
r
}
it <- list(nextElem=nextEl)
class(it) <- c('abstractiter', 'iter')
it
}
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