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get_unique_index <- function(x, term_only = FALSE) {
idx <- c("term", "contrast", grep("^contrast_", colnames(x), value = TRUE))
idx <- intersect(unique(idx), colnames(x))
if (length(idx) == 0) {
return(NULL)
}
if (length(idx) == 1) {
return(x[[idx]])
}
out <- x[, idx, drop = FALSE]
for (i in ncol(out):2) {
if (length(unique(out[[i]])) == 1) {
out[[i]] <- NULL
}
}
out <- apply(out, 1, toString)
return(out)
}
warn_once <- function(msg, id) {
if (!isTRUE(getOption(id, default = TRUE)) || !isTRUE(getOption("marginaleffects_safe", default = TRUE))) {
return(invisible())
}
msg <- paste(msg, "This warning appears once per session.")
# warn_sprintf(msg, call. = FALSE)
warning(msg, call. = FALSE)
opts <- list(FALSE)
names(opts) <- id
options(opts)
}
# Cross join a list of data tables
# Source: https://github.com/Rdatatable/data.table/issues/1717#issuecomment-545758165
cjdt <- function(dtlist) {
Reduce(
function(DT1, DT2) cbind(DT1, DT2[rep(seq_len(.N), each = nrow(DT1))]),
dtlist
)
}
# recurse up. mostly useful for `tinytest`
# this is dumb, but it's late and i don't feel like thinking about this
evalup <- function(xcall) {
out <- myTryCatch(eval(xcall))
if (inherits(out$error, "simpleError")) {
msg <- out$error$message
out <- NULL
} else {
msg <- NULL
out <- out$value
}
for (i in 1:10) {
if (is.null(out)) {
out <- hush(eval(xcall, parent.frame(i)))
}
}
if (is.null(out) && !is.null(msg)) {
stop(msg)
}
return(out)
}
merge_by_rowid <- function(x, y) {
# return data
# very import to avoid sorting, otherwise bayesian draws won't fit predictions
# merge only with rowid; not available for hypothesis
mergein <- setdiff(colnames(y), colnames(x))
if ("rowid" %in% colnames(x) && "rowid" %in% colnames(y) && length(mergein) > 0) {
idx <- c("rowid", mergein)
if (!data.table::is.data.table(y)) {
data.table::setDT(y)
tmp <- y[, ..idx]
} else {
tmp <- y[, ..idx]
}
# TODO: this breaks in mclogit. maybe there's a more robust merge
# solution for weird grouped data. But it seems fine because
# `predictions()` output does include the original predictors.
out <- tryCatch(
merge(x, tmp, by = "rowid", sort = FALSE),
error = function(e) x
)
} else {
out <- x
}
return(out)
}
# faster than all(x %in% 0:1)
is_binary <- function(x) {
isTRUE(checkmate::check_integerish(
x,
null.ok = TRUE,
upper = 1,
lower = 0,
any.missing = TRUE,
all.missing = FALSE
))
}
sub_named_vector <- function(x, y) {
# issue 1005
xlab <- gsub("^`|`$", "", names(x))
ylab <- gsub("^`|`$", "", names(y))
idx <- match(ylab, xlab)
if (length(stats::na.omit(idx)) > 0) {
x[stats::na.omit(idx)] <- y[!is.na(idx)]
} else if (length(y) == length(x)) {
return(y)
} else {
stop(
"set_coef() substitution error. Please report on Github with a reproducible example: https://github.com/vincentarelbundock/marginaleffects/issues",
call. = FALSE
)
}
return(x)
}
group_to_factor <- function(group, model) {
dv <- try(insight::get_response(model), silent = TRUE)
if (inherits(dv, "factor")) {
if (length(unique(group)) == nlevels(dv)) {
group <- factor(group, levels(dv))
}
}
return(group)
}
...get <- function(x, ifnotfound = NULL) {
eval(
quote(
if (!anyNA(.m1 <- match(.x, ...names())) && !is.null(.m2 <- ...elt(.m1))) {
.m2
} else {
.ifnotfound
}),
pairlist(.x = x[1L], .ifnotfound = ifnotfound),
parent.frame(1L)
)
}
...mget <- function(x) {
found <- match(x, eval(quote(...names()), parent.frame(1L)))
not_found <- is.na(found)
if (all(not_found)) {
return(list())
}
stats::setNames(
lapply(found[!not_found], function(z) {
eval(
quote(...elt(.z)),
pairlist(.z = z),
parent.frame(3L)
)
}),
x[!not_found]
)
}
stop_deprecate <- function(old, new = NULL) {
if (is.null(new)) {
msg <- sprintf("The `%s` argument is not supported.", old)
} else {
msg <- sprintf("The `%s` argument is not supported. Please use `%s` instead.", old, new)
}
stop(msg, call. = FALSE)
}
stop_sprintf <- function(msg, ...) {
dots <- list(...)
if (length(dots) > 0) {
msg <- sprintf(msg, ...)
}
stop(msg, call. = FALSE)
}
warn_sprintf <- function(msg, ...) {
if (!isTRUE(getOption("marginaleffects_safe", default = TRUE))) {
return(invisible())
}
dots <- list(...)
if (length(dots) > 0) {
msg <- sprintf(msg, ...)
}
warning(msg, call. = FALSE)
}
# Like do.call() but avoids inlining argument values into the call expression.
# When do.call(fn, list(huge_model, huge_data)) errors, R stores the entire
# inlined data in sys.calls(), and IDEs (RStudio/Positron) try to deparse it,
# causing multi-minute hangs. This builds a call with symbol references instead.
# See: https://github.com/vincentarelbundock/marginaleffects/issues/1663
do_call <- function(what, args) {
call_env <- new.env(parent = parent.frame())
call_env[[".what"]] <- what
arg_names <- names(args) %||% rep("", length(args))
call_list <- vector("list", length(args) + 1L)
call_list[[1L]] <- as.symbol(".what")
for (i in seq_along(args)) {
sym_name <- sprintf(".arg%d", i)
call_env[[sym_name]] <- args[[i]]
call_list[[i + 1L]] <- as.symbol(sym_name)
}
names(call_list) <- c("", arg_names)
eval(as.call(call_list), call_env)
}
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