1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
|
test_that("surv_coxph", {
requirePackagesOrSkip("survival", default.method = "load")
parset.list = list(
list(),
list(iter.max = 1),
list(iter.max = 10),
list(iter.max = 50)
)
old.predicts.list = list()
for (i in seq_along(parset.list)) {
parset = parset.list[[i]]
pars = list(formula = surv.formula, data = surv.train)
pars = c(pars, parset)
m = do.call(survival::coxph, pars)
p = predict(m, newdata = surv.test, type = "lp")
old.predicts.list[[i]] = p
}
testSimpleParsets("surv.coxph", surv.df, surv.target, surv.train.inds,
old.predicts.list, parset.list)
})
|
