File: indepBR.Rd

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\name{indepBR}
\alias{indepBR}
\title{Blanchard-Roquain (2009) 1-stage adaptive step-up}
\usage{indepBR(pValues, alpha, lambda=1, silent=FALSE)}
\description{Blanchard-Roquain (2009) 1-stage adaptive step-up}
\details{This is a step-up procedure with critical values

C_i = alpha * min( i * ( 1 - lambda * alpha) / (m - i + 1) , lambda )

where alpha is the level at which FDR should be controlled and lambda an 
arbitrary parameter belonging to (0, 1/alpha) with default value 1.
This procedure controls FDR at the desired level when the p-values are independent.}
\value{A list containing:

\item{rejected}{A logical vector indicating which hypotheses are rejected}

\item{criticalValues}{A numeric vector containing critical values used in the step-up-down test}

\item{errorControl}{A Mutoss S4 class of type \code{errorControl}, containing the type of error controlled by the function and the level \code{alpha}.}}
\author{GillesBlanchard}
\references{Blanchard, G. and Roquain, E. (2009) 
Adaptive False Discovery Rate Control under Independence and Dependence
Journal of Machine Learning Research 10:2837-2871.}
\arguments{\item{pValues}{the used p-values (assumed to be independent)}
\item{alpha}{the level at which the FDR should be controlled.}
\item{lambda}{parameter of the procedure, should belong to
(0, 1/alpha) (lambda=1 default)}
\item{silent}{if true any output on the console will be suppressed.}}