File: MxExpectationGREML-class.Rd

package info (click to toggle)
r-cran-openmx 2.21.1%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 14,412 kB
  • sloc: cpp: 36,577; ansic: 13,811; fortran: 2,001; sh: 1,440; python: 350; perl: 21; makefile: 5
file content (58 lines) | stat: -rw-r--r-- 3,158 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
\name{MxExpectationGREML-class}
\Rdversion{1.1}
\docType{class}
\alias{MxExpectationGREML-class}
\alias{MxExpectationGREML}

\title{Class "MxExpectationGREML"}
\description{
\code{MxExpectationGREML} is a type of expectation class.  It contains the necessary elements for specifying a GREML model.  For more information, see \code{\link{mxExpectationGREML}()}.
}
\section{Objects from the Class}{
Objects can be created by calls of the form 
\code{mxExpectationGREML(V, yvars, Xvars, addOnes, blockByPheno, 
                        staggerZeroes, dataset.is.yX, casesToDropFromV)}.
}
\section{Slots}{
  \describe{
    \item{\code{V}:}{Object of class \code{"MxCharOrNumber"}.  Identifies the \code{\link{MxAlgebra}} or \code{\link{MxMatrix}} to serve as the 'V' matrix.}
    \item{\code{yvars}:}{Character vector.  Each string names a column of the raw dataset, to be used as a phenotypes.}
    \item{\code{Xvars}:}{A list of data column names, specifying the covariates to be used with each phenotype.}
    \item{\code{addOnes}:}{Logical; pertains to data-handling at runtime.}
    \item{\code{blockByPheno}:}{Logical; pertains to data-handling at runtime.}
    \item{\code{staggerZeroes}:}{Logical; pertains to data-handling at runtime.}
    \item{\code{dataset.is.yX}:}{Logical; pertains to data-handling at runtime.}
    \item{\code{y}:}{Object of class \code{"MxData"}.  Its \code{observed} slot will contain the phenotype vector, 'y.'}
    \item{\code{X}:}{A matrix, to contain the 'X' matrix of covariates.}
    \item{\code{yXcolnames}:}{Character vector; used to store the column names of 'y' and 'X.'}
    \item{\code{casesToDrop}:}{Integer vector, specifying the rows and columns of the 'V' matrix to be removed at runtime.}
    \item{\code{b}:}{A matrix, to contain the vector of regression coefficients calculated at runtime.}
    \item{\code{bcov}:}{A matrix, to contain the sampling covariance matrix of the regression coefficients calculated at runtime.}
    \item{\code{numFixEff}:}{Integer number of covariates in 'X.'}
    \item{\code{dims}:}{Object of class \code{"character"}.}
    \item{\code{numStats}:}{Numeric; number of observed statistics.}
    \item{\code{dataColumns}:}{Object of class \code{"numeric"}.}
    \item{\code{name}:}{Object of class \code{"character"}.}
    \item{\code{data}:}{Object of class \code{"MxCharOrNumber"}.}
    \item{\code{.runDims}:}{Object of class \code{"character"}.}
  }
}
\section{Extends}{
Class \code{"MxBaseExpectation"}, directly.
Class \code{"MxBaseNamed"}, by class "MxBaseExpectation", distance 2.
Class \code{"MxExpectation"}, by class "MxBaseExpectation", distance 2.
}
\section{Methods}{
No methods defined with class "MxExpectationGREML" in the signature.
}
\references{
The OpenMx User's guide can be found at \url{https://openmx.ssri.psu.edu/documentation}.
}

\seealso{
See \code{\link{mxExpectationGREML}()} for creating MxExpectationGREML objects, and for more information generally concerning GREML analyses, including a complete example. More information about the OpenMx package may be found \link[=OpenMx]{here}. 
}
\examples{
showClass("MxExpectationGREML")
}
\keyword{classes}