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#
# Copyright 2007-2019 by the individuals mentioned in the source code history
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
library(OpenMx)
library(testthat)
#This test script doesn't use any of the GD optimizers, so there's no reason to run it when all 3 are the default:
if(mxOption(NULL,"Default optimizer")!="SLSQP"){stop("SKIP")}
expect_error(
mxComputeNelderMead(unrecognizedArgument=3),
"mxComputeNelderMead does not accept"
)
omxCheckError(
mxComputeNelderMead(nudgeZeroStarts="foo"),
"unrecognized character string provided as argument 'nudgeZeroStarts'"
)
omxCheckError(
mxComputeNelderMead(alpha=-1),
"reflection coefficient 'alpha' must be positive"
)
omxCheckError(
mxComputeNelderMead(betao=-1),
"contraction coefficients 'betao' and 'betai' must both be within unit interval (0,1)"
)
omxCheckError(
mxComputeNelderMead(betao=2),
"contraction coefficients 'betao' and 'betai' must both be within unit interval (0,1)"
)
omxCheckError(
mxComputeNelderMead(betai=-1),
"contraction coefficients 'betao' and 'betai' must both be within unit interval (0,1)"
)
omxCheckError(
mxComputeNelderMead(betai=2),
"contraction coefficients 'betao' and 'betai' must both be within unit interval (0,1)"
)
omxCheckError(
mxComputeNelderMead(alpha=1,gamma=0.9),
"if positive, expansion coefficient 'gamma' must be greater than reflection coefficient 'alpha'"
)
omxCheckError(
mxComputeNelderMead(sigma=1),
"shrink coefficient 'sigma' must be less than 1.0"
)
omxCheckError(
mxComputeNelderMead(iniSimplexType="foo"),
"'foo' should be one of 'regular', 'right', 'smartRight', and 'random'"
)
omxCheckError(
mxComputeNelderMead(degenLimit=-1),
"'degenLimit' must be within interval [0,pi]"
)
omxCheckError(
mxComputeNelderMead(degenLimit=-1),
"'degenLimit' must be within interval [0,pi]"
)
omxCheckError(
mxComputeNelderMead(stagnCtrl=10),
"'stagnCtrl' must be an integer vector of length 2"
)
omxCheckError(
mxComputeNelderMead(ineqConstraintMthd="foo"),
"'foo' should be one of 'soft' and 'eqMthd'"
)
omxCheckError(
mxComputeNelderMead(eqConstraintMthd="foo"),
"'foo' should be one of 'GDsearch', 'soft', 'backtrack', and 'l1p'"
)
##################################################
set.seed(1611150)
x <- matrix(rnorm(1000,sd=2))
colnames(x) <- "x"
m <- mxModel(
"mod",
mxData(observed=x,type="raw"),
mxMatrix(type="Full",nrow=1,ncol=1,free=T,values=0,labels="mu",name="Mu"),
mxMatrix(type="Full",nrow=1,ncol=1,free=T,values=4,labels="sigma2",name="Sigma2",lbound=0.0001),
mxExpectationNormal(covariance="Sigma2",means="Mu",dimnames=c("x")),
mxAlgebra(sqrt(Sigma2),name="Sigma"),
mxFitFunctionML()
)
plan <- omxDefaultComputePlan()
plan$steps$GD <- mxComputeNelderMead()
plan2 <- plan
plan$steps$GD$alpha <- -1
omxCheckError(mxRun(mxModel(m,plan)), "reflection coefficient 'alpha' must be positive")
plan <- plan2
plan$steps$GD$betao <- -1
omxCheckError(mxRun(mxModel(m,plan)), "contraction coefficients 'betao' and 'betai' must both be within unit interval (0,1)")
plan <- plan2
plan$steps$GD$betai <- 1
omxCheckError(mxRun(mxModel(m,plan)), "contraction coefficients 'betao' and 'betai' must both be within unit interval (0,1)")
plan <- plan2
plan$steps$GD$gamma <- 0.9
omxCheckError(mxRun(mxModel(m,plan)), "if positive, expansion coefficient 'gamma' must be greater than reflection coefficient 'alpha'")
plan <- plan2
plan$steps$GD$iniSimplexType <- "foo"
omxCheckError(mxRun(mxModel(m,plan)), "unrecognized character string provided for Nelder-Mead 'iniSimplexType'")
plan <- plan2
plan$steps$GD$degenLimit <- -1
omxCheckError(mxRun(mxModel(m,plan)), "'degenLimit' must ge within interval [0,pi]")
plan <- plan2
plan$steps$GD$stagnCtrl <- 10L
omxCheckError(mxRun(mxModel(m,plan)), "'stagnCtrl' must be an integer vector of length 2")
plan <- plan2
plan$steps$GD$xTolProx <- -1
plan$steps$GD$fTolProx <- -1
omxCheckWarning(mxRun(mxModel(m,plan)), "both 'xTolProx' and 'fTolProx' are non-positive; 'fTolProx' will be assigned a value of 1e-14")
plan <- plan2
plan$steps$GD$ineqConstraintMthd <- "foo"
omxCheckError(mxRun(mxModel(m,plan)), "unrecognized character string provided for Nelder-Mead 'ineqConstraintMthd'")
plan <- plan2
plan$steps$GD$eqConstraintMthd <- "foo"
omxCheckError(mxRun(mxModel(m,plan)), "unrecognized character string provided for Nelder-Mead 'eqConstraintMthd'")
plan <- plan2
ism <- matrix(0,1,1)
plan$steps$GD$iniSimplexMat <- ism
omxCheckError(mxRun(mxModel(m,plan)), "'iniSimplexMat' has 1 columns, but 2 columns expected")
plan <- plan2
ism <- matrix(c(0,4,-1,4,0,5,1,1),4,2)
colnames(ism) <- c("mu","sigma2")
plan$steps$GD$iniSimplexMat <- ism
plan$steps$GD$fTolProx <- 1e-8
plan$steps$GD$xTolProx <- 1e-8
omxCheckWarning(mxRun(mxModel(m,plan)), "'iniSimplexMat' has 4 rows, but 3 rows expected; extraneous rows will be ignored")
plan <- plan2
ism <- matrix(c(0,4,-1,4,0,5),3,2,byrow=T)
colnames(ism) <- c("um","sigma2")
plan$steps$GD$iniSimplexMat <- ism
omxCheckError(mxRun(mxModel(m,plan)), "error in mapping column names of 'iniSimplexMat' to free-parameter labels")
plan <- plan2
ism <- matrix(c(0,4,-1,5),2,2,byrow=T)
colnames(ism) <- c("mu","sigma2")
plan$steps$GD$iniSimplexMat <- ism
plan$steps$GD$fTolProx <- 1e-8
plan$steps$GD$xTolProx <- 1e-8
omxCheckWarning(mxRun(mxModel(m,plan)), "'iniSimplexMat' has 2 rows, but 3 rows expected; omitted rows will be generated randomly")
plan <- plan2
ism <- matrix(c(2,4,1,4,3,5),3,2,byrow=T)
colnames(ism) <- c("mu","sigma2")
plan$steps$GD$iniSimplexMat <- ism
plan$steps$GD$validationRestart <- FALSE
plan$steps <- list(GD=plan$steps$GD)
omxCheckWarning(
mxRun(mxModel(m,plan,mxConstraint(Mu<0))),
"In model 'mod' Optimizer returned a non-zero status code 10. Starting values are not feasible. Consider mxTryHard()"
)
plan <- plan2
ism <- matrix(c(-2,4,-1,4,-3,5),3,2,byrow=T)
colnames(ism) <- c("mu","sigma2")
plan$steps$GD$iniSimplexMat <- ism
plan$steps$GD$validationRestart <- FALSE
plan$steps <- list(GD=plan$steps$GD)
omxCheckWarning(
mxRun(mxModel(m,plan,mxConstraint(Mu>0))),
"In model 'mod' Optimizer returned a non-zero status code 10. Starting values are not feasible. Consider mxTryHard()"
)
plan <- plan2
#Note: status code 3 is tested in models/passing/UselessConstraint.R; status code 4 is tested in models/nightly/NelderMeadUnitTesting.R.
ism <- matrix(c(0,4,-1,4,0,5),3,2,byrow=T)
plan$steps$GD$iniSimplexMat <- ism
omxCheckError(mxRun(mxModel(m,plan)), "'iniSimplexMat' has 0 column names, but 2 column names expected")
plan <- plan2
#Test that the l1p method can tolerate every point of the initial simplex violating a constraint:
ism <- matrix(c(2,4,1,4,3,5),3,2,byrow=T)
colnames(ism) <- c("mu","sigma2")
plan$steps$GD$iniSimplexMat <- ism
plan$steps$GD$validationRestart <- FALSE
plan$steps$GD$ineqConstraintMthd <- "eqMthd"
plan$steps$GD$eqConstraintMthd <- "l1p"
plan$steps <- list(GD=plan$steps$GD)
mxRun(mxModel(m,plan,mxConstraint(Mu<0)))
plan <- plan2
ism <- matrix(c(-2,4,-1,4,-3,5),3,2,byrow=T)
colnames(ism) <- c("mu","sigma2")
plan$steps$GD$iniSimplexMat <- ism
plan$steps$GD$validationRestart <- FALSE
plan$steps$GD$ineqConstraintMthd <- "eqMthd"
plan$steps$GD$eqConstraintMthd <- "l1p"
plan$steps <- list(GD=plan$steps$GD)
mxRun(mxModel(m,plan,mxConstraint(Mu>0)))
plan <- plan2
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