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# classes: .coxph, .aareg, .survreg, .riskRegression
#################### .coxph ------
#' @export
ci.coxph <- ci.tobit
#' @rdname standard_error
#' @export
standard_error.coxph <- function(model, method = NULL, ...) {
robust <- !is.null(method) && method == "robust"
if (isTRUE(robust)) {
return(standard_error_robust(model, ...))
}
params <- insight::get_parameters(model)
cs <- stats::coef(summary(model))
se <- cs[, 3]
# check
if (length(se) > nrow(params)) {
se <- se[match(params$Parameter, .remove_backticks_from_string(rownames(cs)))]
}
.data_frame(
Parameter = params$Parameter,
SE = as.vector(se)
)
}
#' @export
p_value.coxph <- function(model, method = NULL, ...) {
robust <- !is.null(method) && method == "robust"
if (isTRUE(robust)) {
return(p_value_robust(model, ...))
}
cs <- stats::coef(summary(model))
p_column <- grep("^(Pr\\(>|p)", colnames(cs))
p <- cs[, p_column]
params <- insight::get_parameters(model)
# check
if (length(p) > nrow(params)) {
p <- p[match(params$Parameter, .remove_backticks_from_string(rownames(cs)))]
}
.data_frame(
Parameter = params$Parameter,
p = as.vector(p)
)
}
#################### .aareg ------
#' @export
standard_error.aareg <- function(model, ...) {
s <- summary(model)
se <- s$table[, "se(coef)"]
.data_frame(
Parameter = .remove_backticks_from_string(names(se)),
SE = as.vector(se)
)
}
#' @export
p_value.aareg <- function(model, ...) {
s <- summary(model)
p <- s$table[, "p"]
.data_frame(
Parameter = .remove_backticks_from_string(names(p)),
p = as.vector(p)
)
}
#' @export
ci.aareg <- ci.tobit
#################### .survreg ------
#' @export
standard_error.survreg <- function(model, method = NULL, ...) {
robust <- !is.null(method) && method == "robust"
if (isTRUE(robust)) {
return(standard_error_robust(model, ...))
}
s <- summary(model)
se <- s$table[, 2]
.data_frame(
Parameter = .remove_backticks_from_string(names(se)),
SE = as.vector(se)
)
}
#' @export
p_value.survreg <- function(model, method = NULL, ...) {
robust <- !is.null(method) && method == "robust"
if (isTRUE(robust)) {
return(p_value_robust(model, ...))
}
s <- summary(model)
p <- s$table[, "p"]
.data_frame(
Parameter = .remove_backticks_from_string(names(p)),
p = as.vector(p)
)
}
#################### .riskRegression ------
#' @importFrom stats coef
#' @importFrom utils capture.output
#' @export
standard_error.riskRegression <- function(model, ...) {
junk <- utils::capture.output(cs <- stats::coef(model))
.data_frame(
Parameter = .remove_backticks_from_string(as.vector(cs[, 1])),
SE = as.numeric(cs[, "StandardError"])
)
}
#' @export
p_value.riskRegression <- function(model, ...) {
junk <- utils::capture.output(cs <- stats::coef(model))
.data_frame(
Parameter = .remove_backticks_from_string(as.vector(cs[, 1])),
p = as.numeric(cs[, "Pvalue"])
)
}
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