1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133
|
# plm package: .plm, .pgmm, .pggls
# plm ---------------------------
#' @export
standard_error.plm <- function(model, vcov = NULL, vcov_args = NULL, verbose = TRUE, ...) {
dots <- list(...)
se <- NULL
se_standard <- stats::coef(summary(model))
# vcov: matrix
if (is.matrix(vcov)) {
se <- sqrt(diag(vcov))
}
# vcov: function which returns a matrix
if (is.function(vcov)) {
fun_args <- c(list(model), vcov_args, dots)
se <- .safe(sqrt(diag(do.call("vcov", fun_args))))
}
# vcov: character (with backward compatibility for `robust = TRUE`)
if (is.character(vcov) || isTRUE(dots[["robust"]])) {
.vcov <- insight::get_varcov(
model,
vcov = vcov,
vcov_args = vcov_args,
verbose = verbose,
...
)
se <- sqrt(diag(.vcov))
}
if (is.null(se)) {
se <- as.vector(se_standard[, 2])
}
.data_frame(
Parameter = .remove_backticks_from_string(rownames(se_standard)),
SE = se
)
}
#' @export
p_value.plm <- p_value.default
# pggls ------------------------
#' @export
p_value.pggls <- function(model, ...) {
cs <- summary(model)$CoefTable
p <- cs[, 4]
.data_frame(
Parameter = .remove_backticks_from_string(rownames(cs)),
p = as.vector(p)
)
}
# pgmm --------------------
#' @export
model_parameters.pgmm <- function(model,
ci = 0.95,
component = c("conditional", "all"),
exponentiate = FALSE,
p_adjust = NULL,
keep = NULL,
drop = NULL,
verbose = TRUE,
...) {
component <- match.arg(component)
params <- .extract_parameters_generic(
model,
merge_by = c("Parameter", "Component"),
ci = ci,
component = component,
p_adjust = p_adjust,
keep_parameters = keep,
drop_parameters = drop,
...
)
# exponentiate coefficients and SE/CI, if requested
params <- .exponentiate_parameters(params, model, exponentiate)
params <- .add_model_parameters_attributes(
params,
model,
ci,
exponentiate,
p_adjust = p_adjust,
verbose = verbose,
...
)
attr(params, "object_name") <- insight::safe_deparse_symbol(substitute(model))
class(params) <- c("parameters_model", "see_parameters_model", class(params))
params
}
#' @export
standard_error.pgmm <- function(model, component = c("conditional", "all"), ...) {
component <- match.arg(component)
params <- insight::get_parameters(model, component = component, ...)
se <- sqrt(diag(insight::get_varcov(model, component = component, ...)))
.data_frame(
Parameter = params$Parameter,
SE = as.vector(se)
)
}
#' @export
ci.pgmm <- function(x, ci = 0.95, dof = Inf, method = NULL, component = "conditional", ...) {
if (is.null(method)) {
method <- "wald"
} else {
method <- tolower(method)
}
.ci_generic(model = x, ci = ci, dof = dof, method = method, component = component)
}
|