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# normal print ----------------------------
#' @rdname print.parameters_model
#' @export
print_html.parameters_model <- function(x,
pretty_names = TRUE,
split_components = TRUE,
select = NULL,
caption = NULL,
subtitle = NULL,
footer = NULL,
align = NULL,
digits = 2,
ci_digits = digits,
p_digits = 3,
footer_digits = 3,
ci_brackets = c("(", ")"),
show_sigma = FALSE,
show_formula = FALSE,
zap_small = FALSE,
groups = NULL,
font_size = "100%",
line_padding = 4,
column_labels = NULL,
include_reference = FALSE,
verbose = TRUE,
...) {
# check if user supplied digits attributes
if (missing(digits)) {
digits <- .additional_arguments(x, "digits", digits)
}
if (missing(ci_digits)) {
ci_digits <- .additional_arguments(x, "ci_digits", digits)
}
if (missing(p_digits)) {
p_digits <- .additional_arguments(x, "p_digits", p_digits)
}
if (missing(footer_digits)) {
footer_digits <- .additional_arguments(x, "footer_digits", footer_digits)
}
# get attributes
if (missing(select) || is.null(select)) {
select <- attributes(x)$output_style
}
if (missing(groups)) {
groups <- attributes(x)$parameter_groups
}
# we need glue-like syntax right now...
if (!is.null(select)) {
select <- .convert_to_glue_syntax(style = select, "<br>")
}
# check options ---------------
# check if pretty names should be replaced by value labels
# (if we have labelled data)
if (isTRUE(getOption("parameters_labels", FALSE)) || identical(pretty_names, "labels")) {
attr(x, "pretty_names") <- attr(x, "pretty_labels", exact = TRUE)
pretty_names <- TRUE
}
# select which columns to print
if (is.null(select)) {
select <- getOption("parameters_select")
}
# table caption
table_caption <- .print_caption(x, caption, format = "html")
# main table
formatted_table <- .print_core(
x = x,
pretty_names = pretty_names,
split_components = split_components,
select = select,
digits = digits,
ci_digits = ci_digits,
p_digits = p_digits,
zap_small = zap_small,
ci_width = NULL,
ci_brackets = ci_brackets,
format = "html",
groups = groups,
include_reference = include_reference,
...
)
# replace brackets by parenthesis
if (!is.null(ci_brackets) && "Parameter" %in% colnames(formatted_table)) {
formatted_table$Parameter <- gsub("[", ci_brackets[1], formatted_table$Parameter, fixed = TRUE)
formatted_table$Parameter <- gsub("]", ci_brackets[2], formatted_table$Parameter, fixed = TRUE)
}
# footer
footer_stats <- .print_footer(
x,
digits = footer_digits,
show_sigma = show_sigma,
show_formula = show_formula,
format = "html"
)
if (!is.null(footer)) {
footer <- paste0(footer, "<br>", paste(footer_stats, collapse = "<br>"))
} else if (!is.null(footer_stats)) {
footer <- paste(footer_stats, collapse = "<br>")
}
out <- insight::export_table(
formatted_table,
format = "html",
caption = table_caption,
subtitle = subtitle,
footer = footer,
align = align,
...
)
.add_gt_options(
out,
style = select,
font_size = font_size,
line_padding = line_padding,
user_labels = column_labels
)
}
#' @export
print_html.parameters_brms_meta <- print_html.parameters_model
#' @export
print_html.parameters_simulate <- print_html.parameters_model
#' @export
print_html.parameters_sem <- print_html.parameters_model
#' @rdname print.compare_parameters
#' @export
print_html.compare_parameters <- function(x,
caption = NULL,
subtitle = NULL,
footer = NULL,
digits = 2,
ci_digits = digits,
p_digits = 3,
zap_small = FALSE,
groups = NULL,
select = NULL,
ci_brackets = c("(", ")"),
font_size = "100%",
line_padding = 4,
column_labels = NULL,
engine = "gt",
...) {
# check if user supplied digits attributes
if (missing(digits)) {
digits <- .additional_arguments(x, "digits", digits)
}
if (missing(ci_digits)) {
ci_digits <- .additional_arguments(x, "ci_digits", digits)
}
if (missing(p_digits)) {
p_digits <- .additional_arguments(x, "p_digits", p_digits)
}
# get attributes
if (missing(select) || is.null(select)) {
select <- attributes(x)$output_style
}
# markdown engine?
engine <- match.arg(getOption("easystats_html_engine", engine), c("gt", "default", "tt"))
# for tiny table, we can just call print_md()
if (engine == "tt") {
return(print_md(
x,
digits = digits,
ci_digits = ci_digits,
p_digits = p_digits,
caption = caption,
subtitle = subtitle,
footer = footer,
select = select,
split_components = TRUE,
ci_brackets = ci_brackets,
zap_small = zap_small,
groups = groups,
engine = "tt",
outformat = "html"
))
}
# we need glue-like syntax right now...
select <- .convert_to_glue_syntax(style = select, "<br>")
formatted_table <- format(
x,
select = select,
split_components = TRUE,
digits = digits,
ci_digits = ci_digits,
p_digits = p_digits,
ci_width = NULL,
ci_brackets = ci_brackets,
format = "html",
zap_small = zap_small,
groups = groups
)
# replace brackets by parenthesis
if (!is.null(ci_brackets) && "Parameter" %in% colnames(formatted_table)) {
formatted_table$Parameter <- gsub("[", ci_brackets[1], formatted_table$Parameter, fixed = TRUE)
formatted_table$Parameter <- gsub("]", ci_brackets[2], formatted_table$Parameter, fixed = TRUE)
}
out <- insight::export_table(
formatted_table,
format = "html",
caption = caption, # TODO: get rid of NOTE
subtitle = subtitle,
footer = footer,
...
)
.add_gt_options(
out,
style = select,
font_size = font_size,
line_padding = line_padding,
# we assume that model names are at the end of each column name, in parenthesis
original_colnames = gsub("(.*) \\((.*)\\)$", "\\2", colnames(formatted_table))[-1],
column_names = colnames(formatted_table),
user_labels = column_labels
)
}
# helper ------------------
.add_gt_options <- function(out,
style,
font_size = "100%",
line_padding = 4,
original_colnames = NULL,
column_names = NULL,
user_labels = NULL) {
insight::check_if_installed("gt")
out <- gt::tab_options(out,
table.font.size = font_size,
data_row.padding = gt::px(line_padding)
)
# insert newlines
if (!is.null(style) && grepl("<br>", style, fixed = TRUE)) {
insight::check_if_installed("tidyselect")
out <- gt::fmt_markdown(out, columns = tidyselect::everything())
}
# user defined column labels
new_labels <- NULL
if (!is.null(user_labels)) {
new_labels <- c(
colnames(out[["_data"]])[1],
rep_len(user_labels, ncol(out[["_data"]]) - 1)
)
new_labels <- as.list(new_labels)
}
# add a column span? here we have multiple columns (like estimate, CI, p, ...)
# for each model. In this case, we want to add a column spanner, i.e. a
# separate heading for all columns of each model.
if (!is.null(original_colnames) && anyDuplicated(original_colnames) > 0) {
duplicates <- original_colnames[duplicated(original_colnames)]
for (d in duplicates) {
# we need +1 here, because first column is parameter column
span <- which(original_colnames == d) + 1
# add column spanner
out <- gt::tab_spanner(out, label = d, columns = span)
}
# relabel columns. The single columns still have their old labels
# (like "Estimate (model1)", "p (model1)"), and we extracted the "model names"
# and used them for the column spanner. Now we no longer need this suffix,
# and remove it. In case user-defined column labels are provided, "new_labels"
# is not NULL, so we use user labels, else we extract labels from columns.
if (!is.null(column_names)) {
if (is.null(new_labels)) {
new_labels <- as.list(gsub("(.*) \\((.*)\\)$", "\\1", column_names))
}
names(new_labels) <- column_names
out <- gt::cols_label(out, .list = new_labels)
}
# default column label, if we have user labels
} else if (!is.null(new_labels)) {
names(new_labels) <- colnames(out[["_data"]])
out <- gt::cols_label(out, .list = new_labels)
}
# find name of parameter column
pcol_name <- colnames(out[["_data"]])[1]
# check where last parameter row ends. For "compare_models()", the
# first Parameter value after data rows is "". If this is not found,
# simply use number of rows as last row
last_row <- which(!nzchar(as.character(out[["_data"]][[pcol_name]]), keepNA = TRUE))[1]
if (is.na(last_row)) {
last_row <- nrow(out[["_data"]])
} else {
last_row <- last_row - 1
}
# add a border to the first column.
out <- gt::tab_style(
out,
style = gt::cell_borders(
sides = "right",
style = "solid",
color = "#d3d3d3"
),
locations = gt::cells_body(
columns = pcol_name,
rows = 1:last_row
)
)
out
}
|
